Wall clock time and date at job start Tue Mar 31 2020 10:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86792 * 119.99994 * 2 1 4 4 H 1.48500 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47136 * 299.99842 * 3 2 1 6 6 H 1.48507 * 109.47015 * 59.99730 * 3 2 1 7 7 C 1.40034 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00061 * 189.72985 * 7 2 1 9 9 C 1.41542 * 120.00033 * 9.73380 * 7 2 1 10 10 C 1.41176 * 120.99603 * 26.35737 * 9 7 2 11 11 C 1.37598 * 119.01069 * 180.25198 * 10 9 7 12 12 N 1.32075 * 121.10999 * 359.75325 * 11 10 9 13 13 C 1.32466 * 122.23641 * 0.02562 * 12 11 10 14 14 N 1.39468 * 119.58198 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99909 * 354.61838 * 14 13 12 16 16 O 1.21272 * 120.00290 * 354.92448 * 15 14 13 17 17 C 1.50697 * 119.99814 * 174.93133 * 15 14 13 18 18 C 1.53000 * 109.47270 * 179.97438 * 17 15 14 19 19 N 1.46501 * 109.47445 * 179.97438 * 18 17 15 20 20 C 1.35766 * 119.61995 * 90.00441 * 19 18 17 21 21 C 1.35346 * 120.70132 * 179.97438 * 20 19 18 22 22 C 1.40202 * 119.94743 * 0.02562 * 21 20 19 23 23 C 1.36396 * 119.26223 * 359.97438 * 22 21 20 24 24 C 1.34651 * 119.62634 * 269.72981 * 19 18 17 25 25 O 1.22062 * 119.98765 * 359.97438 * 24 19 18 26 26 C 1.38596 * 120.83890 * 359.97438 * 13 12 11 27 27 H 0.97001 * 119.99969 * 359.97438 * 1 2 3 28 28 H 1.07992 * 120.49594 * 0.02772 * 10 9 7 29 29 H 1.08000 * 119.43913 * 179.76880 * 11 10 9 30 30 H 0.97005 * 120.00087 * 174.61430 * 14 13 12 31 31 H 1.09001 * 109.47150 * 299.99448 * 17 15 14 32 32 H 1.09003 * 109.47528 * 59.99356 * 17 15 14 33 33 H 1.08991 * 109.47111 * 300.00186 * 18 17 15 34 34 H 1.09010 * 109.46818 * 59.99889 * 18 17 15 35 35 H 1.07998 * 119.64678 * 359.97438 * 20 19 18 36 36 H 1.07998 * 120.02710 * 179.97438 * 21 20 19 37 37 H 1.07996 * 120.36334 * 179.97438 * 22 21 20 38 38 H 1.08006 * 120.34607 * 180.02562 * 23 22 21 39 39 H 1.08000 * 120.60291 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8827 2.3963 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0760 -1.2194 0.1586 9 6 1.3152 -2.4298 -0.2062 10 6 0.1059 -2.4637 -0.9338 11 6 -0.5360 -3.6686 -1.1057 12 7 -0.0367 -4.7850 -0.6069 13 6 1.0963 -4.8077 0.0792 14 7 1.5733 -6.0186 0.5807 15 6 0.8308 -7.1369 0.4608 16 8 -0.2895 -7.0746 0.0006 17 6 1.3926 -8.4649 0.8989 18 6 0.3544 -9.5625 0.6575 19 7 0.9008 -10.8536 1.0828 20 6 0.7163 -11.2721 2.3611 21 6 1.2112 -12.4611 2.7772 22 6 1.9233 -13.2740 1.8840 23 6 2.1076 -12.8518 0.6002 24 6 1.5755 -11.6142 0.1999 25 8 1.7284 -11.2268 -0.9474 26 6 1.8141 -3.6437 0.3041 27 1 -0.4850 0.8401 0.0004 28 1 -0.3112 -1.5570 -1.3463 29 1 -1.4635 -3.7020 -1.6579 30 1 2.4396 -6.0558 1.0157 31 1 2.2939 -8.6847 0.3266 32 1 1.6373 -8.4237 1.9603 33 1 -0.5466 -9.3426 1.2300 34 1 0.1095 -9.6039 -0.4039 35 1 0.1689 -10.6495 3.0532 36 1 1.0583 -12.7831 3.7967 37 1 2.3214 -14.2238 2.2090 38 1 2.6530 -13.4642 -0.1026 39 1 2.7372 -3.6666 0.8643 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610791449.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:20 Heat of formation + Delta-G solvation = -20.369349 kcal Electronic energy + Delta-G solvation = -24117.360113 eV Core-core repulsion = 20410.639725 eV Total energy + Delta-G solvation = -3706.720388 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.36122 -41.25821 -39.63459 -37.96388 -36.39886 -35.93656 -35.34577 -32.62938 -32.35140 -30.76426 -30.20275 -27.95275 -26.48326 -24.66562 -23.83533 -23.64983 -22.80602 -21.18772 -19.71450 -18.83429 -18.27794 -17.97904 -17.68675 -17.13068 -16.91040 -16.69392 -16.58516 -16.06034 -15.86312 -15.40441 -15.14515 -15.08468 -14.83780 -14.50137 -14.22460 -13.96482 -13.80634 -13.23504 -13.17809 -12.88986 -12.88556 -12.82045 -12.68811 -12.27138 -12.10389 -11.83745 -11.50483 -11.23682 -11.19957 -11.00412 -10.96390 -9.99116 -9.66428 -8.94985 -8.90569 -8.61658 -6.60838 -0.04161 0.71687 0.93258 0.95555 1.40347 1.51035 1.52136 1.56117 1.83337 2.15700 2.21464 2.72109 2.80557 3.50939 3.65209 3.70647 3.71975 3.88959 4.01939 4.17448 4.22149 4.30971 4.39374 4.50649 4.68924 4.72007 4.77099 4.82831 4.91154 5.01825 5.11270 5.23535 5.23963 5.43844 5.44855 5.61278 5.70547 5.94312 6.08440 6.13722 6.40968 6.58848 6.77260 6.80782 7.01232 7.23633 7.80021 8.27078 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.037016 B = 0.002240 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.252677 B =12497.726326 C =12695.154000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.032 3.968 3 Si 0.993 3.007 4 H -0.254 1.254 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.480 4.480 8 H 0.087 0.913 9 C 0.114 3.886 10 C -0.241 4.241 11 C 0.096 3.904 12 N -0.579 5.579 13 C 0.345 3.655 14 N -0.650 5.650 15 C 0.503 3.497 16 O -0.526 6.526 17 C -0.133 4.133 18 C 0.110 3.890 19 N -0.491 5.491 20 C 0.128 3.872 21 C -0.226 4.226 22 C 0.009 3.991 23 C -0.282 4.282 24 C 0.490 3.510 25 O -0.616 6.616 26 C -0.310 4.310 27 H 0.291 0.709 28 H 0.121 0.879 29 H 0.139 0.861 30 H 0.427 0.573 31 H 0.099 0.901 32 H 0.141 0.859 33 H 0.120 0.880 34 H 0.070 0.930 35 H 0.200 0.800 36 H 0.184 0.816 37 H 0.168 0.832 38 H 0.143 0.857 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.654 -19.312 11.803 23.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.184 4.184 3 Si 0.813 3.187 4 H -0.177 1.177 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.511 4.511 8 H 0.105 0.895 9 C 0.106 3.894 10 C -0.265 4.265 11 C -0.055 4.055 12 N -0.299 5.299 13 C 0.117 3.883 14 N -0.298 5.298 15 C 0.290 3.710 16 O -0.399 6.399 17 C -0.174 4.174 18 C -0.012 4.012 19 N -0.200 5.200 20 C 0.002 3.998 21 C -0.248 4.248 22 C -0.013 4.013 23 C -0.303 4.303 24 C 0.295 3.705 25 O -0.504 6.504 26 C -0.336 4.336 27 H 0.102 0.898 28 H 0.139 0.861 29 H 0.156 0.844 30 H 0.266 0.734 31 H 0.117 0.883 32 H 0.159 0.841 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.217 0.783 36 H 0.202 0.798 37 H 0.186 0.814 38 H 0.160 0.840 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.256 -19.730 10.618 22.642 hybrid contribution 0.915 1.710 -0.245 1.955 sum 4.171 -18.020 10.373 21.207 Atomic orbital electron populations 1.69817 1.09155 1.30868 1.34749 1.26923 0.95661 1.04922 0.90870 0.84985 0.79333 0.75429 0.78927 1.17747 1.19016 1.18969 1.19913 0.96256 0.90700 1.44184 0.89455 1.18049 0.91419 0.92973 0.86945 1.22292 1.00419 0.98029 1.05746 1.22183 0.98464 0.87907 0.96954 1.67283 1.14280 1.30475 1.17849 1.18287 0.91303 0.85411 0.93329 1.43431 1.22662 1.05664 1.58069 1.21168 0.85535 0.86001 0.78308 1.90789 1.20016 1.86453 1.42600 1.21845 1.00165 0.89210 1.06163 1.21570 0.96787 0.79756 1.03119 1.45564 1.44849 1.18188 1.11420 1.22805 0.95666 0.97254 0.84048 1.21213 1.05497 0.94840 1.03270 1.21896 0.89259 0.99177 0.90975 1.22098 1.10830 0.97171 1.00251 1.17770 0.80457 0.87153 0.85110 1.90956 1.63323 1.75448 1.20645 1.21440 1.05777 0.92136 1.14223 0.89781 0.86114 0.84366 0.73403 0.88267 0.84084 0.86148 0.91105 0.78310 0.79842 0.81405 0.83954 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.57 10.70 21.84 0.23 -41.34 16 2 C 0.03 1.56 5.31 85.29 0.45 2.02 16 3 Si 0.99 36.25 29.57 68.60 2.03 38.28 16 4 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 5 H -0.27 -9.39 7.11 99.48 0.71 -8.69 16 6 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 7 C -0.48 -24.74 9.13 23.52 0.21 -24.52 16 8 H 0.09 4.24 7.87 -2.91 -0.02 4.21 16 9 C 0.11 6.13 5.60 -21.11 -0.12 6.01 16 10 C -0.24 -13.02 8.77 22.84 0.20 -12.82 16 11 C 0.10 4.97 11.15 84.50 0.94 5.91 16 12 N -0.58 -30.23 7.89 -193.53 -1.53 -31.76 16 13 C 0.35 16.18 7.40 132.75 0.98 17.16 16 14 N -0.65 -22.83 5.39 -308.67 -1.66 -24.49 16 15 C 0.50 17.10 7.78 87.66 0.68 17.78 16 16 O -0.53 -23.09 14.27 -3.00 -0.04 -23.14 16 17 C -0.13 -2.91 6.03 29.85 0.18 -2.73 16 18 C 0.11 2.51 4.63 86.38 0.40 2.91 16 19 N -0.49 -9.41 2.58 -650.98 -1.68 -11.09 16 20 C 0.13 1.19 10.28 83.42 0.86 2.05 16 21 C -0.23 -1.42 10.01 22.08 0.22 -1.20 16 22 C 0.01 0.08 10.10 22.32 0.23 0.31 16 23 C -0.28 -5.27 9.99 22.40 0.22 -5.05 16 24 C 0.49 12.88 7.41 84.82 0.63 13.51 16 25 O -0.62 -23.01 16.63 -5.52 -0.09 -23.10 16 26 C -0.31 -14.88 9.73 22.99 0.22 -14.65 16 27 H 0.29 13.24 8.29 -92.71 -0.77 12.47 16 28 H 0.12 6.66 6.11 -2.91 -0.02 6.64 16 29 H 0.14 6.47 8.06 -2.91 -0.02 6.45 16 30 H 0.43 10.95 8.70 -92.70 -0.81 10.14 16 31 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.12 2.26 7.97 -2.39 -0.02 2.24 16 34 H 0.07 2.23 7.33 -2.38 -0.02 2.21 16 35 H 0.20 0.33 8.04 -2.91 -0.02 0.31 16 36 H 0.18 -0.19 8.06 -2.91 -0.02 -0.21 16 37 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 38 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 39 H 0.12 5.22 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -82.64 342.57 3.86 -78.78 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.29 Total: 31.17 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 6.32 Total: 6.69 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -4.64 Total: -108.68 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -0.13 Total: -46.23 kcal Atomic # 14 Polarization: 36.25 SS G_CDS: 2.03 Total: 38.28 kcal Total: -82.64 3.86 -78.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610791449.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.406 kcal (2) G-P(sol) polarization free energy of solvation -82.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds