Wall clock time and date at job start Tue Mar 31 2020 10:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36199 * 120.05125 * 2 1 4 4 C 1.41019 * 118.59704 * 179.69841 * 3 2 1 5 5 O 1.21987 * 120.70965 * 180.28918 * 4 3 2 6 6 N 1.35021 * 118.58044 * 0.53553 * 4 3 2 7 7 C 1.46504 * 120.04253 * 179.74583 * 6 4 3 8 8 C 1.50695 * 109.47182 * 269.73150 * 7 6 4 9 9 O 1.21275 * 120.00396 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99750 * 179.97438 * 8 7 6 11 11 C 1.39237 * 119.99846 * 183.00610 * 10 8 7 12 12 C 1.39475 * 119.83434 * 322.20482 * 11 10 8 13 13 C 1.36375 * 120.16975 * 179.71801 * 12 11 10 14 14 C 1.40871 * 119.82560 * 0.57195 * 13 12 11 15 15 C 1.41155 * 120.16166 * 179.67723 * 14 13 12 16 16 H 1.07999 * 119.99826 * 158.04026 * 15 14 13 17 17 C 1.39904 * 120.00262 * 338.03280 * 15 14 13 18 18 N 1.30870 * 120.00242 * 327.61696 * 17 15 14 19 19 Si 1.86792 * 120.00037 * 147.61156 * 17 15 14 20 20 H 1.48501 * 109.47400 * 94.98636 * 19 17 15 21 21 H 1.48502 * 109.47597 * 214.99095 * 19 17 15 22 22 H 1.48507 * 109.47181 * 334.98741 * 19 17 15 23 23 C 1.40866 * 119.67361 * 359.70674 * 14 13 12 24 24 C 1.36376 * 119.82945 * 359.97438 * 23 14 13 25 25 C 1.34746 * 119.91653 * 359.48072 * 6 4 3 26 26 N 1.30636 * 121.49227 * 0.24609 * 25 6 4 27 27 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47028 * 300.02657 * 1 2 3 29 29 H 1.09000 * 109.46773 * 60.02286 * 1 2 3 30 30 H 1.08003 * 120.69922 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.46964 * 149.72426 * 7 6 4 32 32 H 1.09001 * 109.46626 * 29.72933 * 7 6 4 33 33 H 0.96996 * 120.00135 * 3.27875 * 10 8 7 34 34 H 1.08004 * 119.91566 * 0.02562 * 12 11 10 35 35 H 1.08004 * 120.09044 * 180.25815 * 13 12 11 36 36 H 0.97003 * 120.00628 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.08671 * 179.97438 * 23 14 13 38 38 H 1.07998 * 119.91758 * 180.02562 * 24 23 14 39 39 H 1.07997 * 119.25232 * 180.27765 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1891 1.1789 0.0000 4 6 3.5988 1.1431 0.0065 5 8 4.2482 2.1758 0.0120 6 7 4.2145 -0.0585 0.0014 7 6 5.6776 -0.1330 0.0023 8 6 6.1802 -0.1586 -1.4182 9 8 5.3937 -0.1190 -2.3405 10 7 7.5037 -0.2254 -1.6636 11 6 7.9716 -0.1859 -2.9744 12 6 7.2617 -0.8349 -3.9844 13 6 7.7106 -0.7957 -5.2716 14 6 8.9010 -0.1076 -5.5778 15 6 9.3758 -0.0683 -6.9065 16 1 10.0522 0.7150 -7.2153 17 6 8.9704 -1.0441 -7.8234 18 7 8.7218 -2.2625 -7.4154 19 14 8.7836 -0.6080 -9.6301 20 1 10.0333 -0.9527 -10.3543 21 1 7.6492 -1.3717 -10.2091 22 1 8.5197 0.8474 -9.7633 23 6 9.6156 0.5405 -4.5513 24 6 9.1508 0.4981 -3.2699 25 6 3.4815 -1.1892 0.0009 26 7 2.1755 -1.1558 0.0005 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5143 0.8898 29 1 -0.3633 0.5135 -0.8902 30 1 1.6614 2.1212 -0.0004 31 1 5.9949 -1.0403 0.5164 32 1 6.0853 0.7374 0.5164 33 1 8.1301 -0.3051 -0.9273 34 1 6.3514 -1.3657 -3.7474 35 1 7.1576 -1.2953 -6.0533 36 1 8.4403 -2.9390 -8.0510 37 1 10.5293 1.0696 -4.7785 38 1 9.6973 0.9949 -2.4819 39 1 3.9850 -2.1446 0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611190409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:56 Heat of formation + Delta-G solvation = -2.227086 kcal Electronic energy + Delta-G solvation = -24645.445851 eV Core-core repulsion = 20939.512171 eV Total energy + Delta-G solvation = -3705.933680 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98495 -39.63979 -37.78521 -37.35379 -35.68567 -34.54950 -33.14158 -31.89242 -30.17154 -29.53681 -29.05209 -27.42303 -24.98778 -24.67130 -22.49580 -21.55733 -21.17325 -19.79554 -18.54096 -17.83185 -17.39490 -17.37749 -16.69173 -16.11860 -15.62153 -15.31082 -14.97354 -14.66712 -14.29124 -14.04276 -13.96079 -13.58185 -13.34659 -13.08174 -12.76391 -12.59520 -12.56007 -12.39968 -12.14428 -12.03451 -11.37962 -11.20497 -11.15507 -10.72746 -10.68915 -10.28357 -10.17818 -10.09366 -9.72040 -9.50400 -9.05611 -8.96794 -8.55593 -7.59592 -7.23131 -6.91652 -4.33152 0.47782 1.77430 2.18613 2.45476 2.86667 3.03186 3.04888 3.08412 3.21608 3.39102 3.69186 3.80897 3.86384 4.28157 4.38581 4.46088 4.62603 4.85636 4.89683 5.11358 5.19430 5.28896 5.48575 5.52817 5.62395 5.78821 6.09868 6.17641 6.32412 6.46306 6.68012 6.89853 6.96310 7.02869 7.21286 7.48196 7.57517 7.62463 7.76366 7.84187 7.97958 8.09704 8.20314 8.50891 8.60174 8.78734 8.92605 9.97796 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019635 B = 0.002920 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.664962 B = 9585.424568 C =10301.963837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.177 3.823 3 C -0.292 4.292 4 C 0.525 3.475 5 O -0.535 6.535 6 N -0.504 5.504 7 C 0.069 3.931 8 C 0.484 3.516 9 O -0.520 6.520 10 N -0.640 5.640 11 C -0.027 4.027 12 C -0.072 4.072 13 C -0.174 4.174 14 C 0.113 3.887 15 C -0.463 4.463 16 H 0.083 0.917 17 C 0.087 3.913 18 N -0.765 5.765 19 Si 0.897 3.103 20 H -0.269 1.269 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.223 4.223 24 C -0.090 4.090 25 C 0.390 3.610 26 N -0.543 5.543 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.153 0.847 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.396 0.604 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.284 0.716 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.238 -1.571 15.252 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.058 3.942 3 C -0.317 4.317 4 C 0.325 3.675 5 O -0.413 6.413 6 N -0.220 5.220 7 C -0.058 4.058 8 C 0.268 3.732 9 O -0.396 6.396 10 N -0.283 5.283 11 C -0.119 4.119 12 C -0.092 4.092 13 C -0.194 4.194 14 C 0.110 3.890 15 C -0.490 4.490 16 H 0.101 0.899 17 C -0.135 4.135 18 N -0.388 5.388 19 Si 0.720 3.280 20 H -0.194 1.194 21 H -0.198 1.198 22 H -0.180 1.180 23 C -0.243 4.243 24 C -0.110 4.110 25 C 0.106 3.894 26 N -0.265 5.265 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.171 0.829 31 H 0.142 0.858 32 H 0.148 0.852 33 H 0.229 0.771 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -10.024 -1.680 14.537 17.738 hybrid contribution 0.777 0.717 -0.554 1.193 sum -9.247 -0.963 13.984 16.792 Atomic orbital electron populations 1.20790 0.88070 1.04405 1.03284 1.21197 0.97469 0.87819 0.87765 1.22638 0.92497 1.00872 1.15674 1.17254 0.89509 0.82485 0.78287 1.90956 1.67571 1.31196 1.51608 1.46350 1.08716 1.08780 1.58189 1.21876 0.79025 1.07276 0.97577 1.20461 0.83650 0.78747 0.90360 1.90761 1.55067 1.48624 1.45104 1.42767 1.05926 1.71405 1.08200 1.17004 1.00638 1.11430 0.82790 1.20337 0.98160 0.97700 0.92963 1.20703 0.97752 1.06057 0.94885 1.17607 0.90001 0.88963 0.92382 1.19523 1.25421 1.09869 0.94236 0.89941 1.25959 0.92035 0.93670 1.01841 1.69933 1.29059 1.01527 1.38248 0.86489 0.78905 0.80707 0.81887 1.19405 1.19805 1.18047 1.20483 1.01468 1.10180 0.92148 1.20055 0.95917 0.98636 0.96428 1.24943 0.88171 0.91054 0.85249 1.68266 1.05377 1.28714 1.24170 0.90004 0.89875 0.89753 0.82935 0.85780 0.85247 0.77071 0.88238 0.87576 0.90475 0.88552 0.89119 0.78033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.16 36.01 0.37 -0.46 16 2 C 0.18 2.00 6.77 -82.59 -0.56 1.44 16 3 C -0.29 -3.81 9.74 -39.26 -0.38 -4.20 16 4 C 0.52 8.18 7.45 -15.10 -0.11 8.06 16 5 O -0.54 -10.23 16.78 4.93 0.08 -10.14 16 6 N -0.50 -6.31 2.06 -122.40 -0.25 -6.56 16 7 C 0.07 0.74 5.86 -5.19 -0.03 0.71 16 8 C 0.48 7.94 7.70 -10.99 -0.08 7.85 16 9 O -0.52 -11.18 14.06 5.56 0.08 -11.10 16 10 N -0.64 -10.51 5.30 -9.74 -0.05 -10.56 16 11 C -0.03 -0.59 6.25 -83.57 -0.52 -1.11 16 12 C -0.07 -1.76 8.59 -39.79 -0.34 -2.10 16 13 C -0.17 -4.62 8.74 -39.26 -0.34 -4.96 16 14 C 0.11 3.02 5.57 -106.80 -0.60 2.42 16 15 C -0.46 -12.16 8.94 -37.85 -0.34 -12.50 16 16 H 0.08 2.08 8.02 -52.49 -0.42 1.66 16 17 C 0.09 2.16 4.77 -17.34 -0.08 2.08 16 18 N -0.77 -19.42 11.77 55.55 0.65 -18.76 16 19 Si 0.90 18.32 29.66 -169.99 -5.04 13.28 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 C -0.22 -5.39 9.74 -39.26 -0.38 -5.77 16 24 C -0.09 -1.97 9.90 -39.79 -0.39 -2.36 16 25 C 0.39 4.03 11.48 -90.53 -1.04 2.99 16 26 N -0.54 -6.24 10.31 -10.70 -0.11 -6.35 16 27 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.12 0.65 8.02 -51.93 -0.42 0.24 16 32 H 0.13 1.33 7.45 -51.93 -0.39 0.95 16 33 H 0.40 4.71 8.82 -40.82 -0.36 4.35 16 34 H 0.10 2.42 6.46 -52.48 -0.34 2.08 16 35 H 0.11 2.90 6.52 -52.48 -0.34 2.56 16 36 H 0.28 6.49 8.30 -40.82 -0.34 6.16 16 37 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.20 1.21 8.03 -52.49 -0.42 0.78 16 LS Contribution 343.11 15.07 5.17 5.17 Total: -1.00 -35.69 343.11 -8.67 -44.35 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -4.36 Total: 8.58 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -4.84 Total: -7.90 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.24 Total: -42.23 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.16 Total: -21.25 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.04 Total: 13.28 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.69 -8.67 -44.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611190409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.126 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds