Wall clock time and date at job start Tue Mar 31 2020 10:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36199 * 120.05125 * 2 1 4 4 C 1.41019 * 118.59704 * 179.69841 * 3 2 1 5 5 O 1.21987 * 120.70965 * 180.28918 * 4 3 2 6 6 N 1.35021 * 118.58044 * 0.53553 * 4 3 2 7 7 C 1.46504 * 120.04253 * 179.74583 * 6 4 3 8 8 C 1.50695 * 109.47182 * 269.73150 * 7 6 4 9 9 O 1.21275 * 120.00396 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99750 * 179.97438 * 8 7 6 11 11 C 1.39237 * 119.99846 * 183.00610 * 10 8 7 12 12 C 1.39475 * 119.83434 * 322.20482 * 11 10 8 13 13 C 1.36375 * 120.16975 * 179.71801 * 12 11 10 14 14 C 1.40871 * 119.82560 * 0.57195 * 13 12 11 15 15 C 1.41155 * 120.16166 * 179.67723 * 14 13 12 16 16 H 1.07999 * 119.99826 * 158.04026 * 15 14 13 17 17 C 1.39904 * 120.00262 * 338.03280 * 15 14 13 18 18 N 1.30870 * 120.00242 * 327.61696 * 17 15 14 19 19 Si 1.86792 * 120.00037 * 147.61156 * 17 15 14 20 20 H 1.48501 * 109.47400 * 94.98636 * 19 17 15 21 21 H 1.48502 * 109.47597 * 214.99095 * 19 17 15 22 22 H 1.48507 * 109.47181 * 334.98741 * 19 17 15 23 23 C 1.40866 * 119.67361 * 359.70674 * 14 13 12 24 24 C 1.36376 * 119.82945 * 359.97438 * 23 14 13 25 25 C 1.34746 * 119.91653 * 359.48072 * 6 4 3 26 26 N 1.30636 * 121.49227 * 0.24609 * 25 6 4 27 27 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47028 * 300.02657 * 1 2 3 29 29 H 1.09000 * 109.46773 * 60.02286 * 1 2 3 30 30 H 1.08003 * 120.69922 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.46964 * 149.72426 * 7 6 4 32 32 H 1.09001 * 109.46626 * 29.72933 * 7 6 4 33 33 H 0.96996 * 120.00135 * 3.27875 * 10 8 7 34 34 H 1.08004 * 119.91566 * 0.02562 * 12 11 10 35 35 H 1.08004 * 120.09044 * 180.25815 * 13 12 11 36 36 H 0.97003 * 120.00628 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.08671 * 179.97438 * 23 14 13 38 38 H 1.07998 * 119.91758 * 180.02562 * 24 23 14 39 39 H 1.07997 * 119.25232 * 180.27765 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1891 1.1789 0.0000 4 6 3.5988 1.1431 0.0065 5 8 4.2482 2.1758 0.0120 6 7 4.2145 -0.0585 0.0014 7 6 5.6776 -0.1330 0.0023 8 6 6.1802 -0.1586 -1.4182 9 8 5.3937 -0.1190 -2.3405 10 7 7.5037 -0.2254 -1.6636 11 6 7.9716 -0.1859 -2.9744 12 6 7.2617 -0.8349 -3.9844 13 6 7.7106 -0.7957 -5.2716 14 6 8.9010 -0.1076 -5.5778 15 6 9.3758 -0.0683 -6.9065 16 1 10.0522 0.7150 -7.2153 17 6 8.9704 -1.0441 -7.8234 18 7 8.7218 -2.2625 -7.4154 19 14 8.7836 -0.6080 -9.6301 20 1 10.0333 -0.9527 -10.3543 21 1 7.6492 -1.3717 -10.2091 22 1 8.5197 0.8474 -9.7633 23 6 9.6156 0.5405 -4.5513 24 6 9.1508 0.4981 -3.2699 25 6 3.4815 -1.1892 0.0009 26 7 2.1755 -1.1558 0.0005 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5143 0.8898 29 1 -0.3633 0.5135 -0.8902 30 1 1.6614 2.1212 -0.0004 31 1 5.9949 -1.0403 0.5164 32 1 6.0853 0.7374 0.5164 33 1 8.1301 -0.3051 -0.9273 34 1 6.3514 -1.3657 -3.7474 35 1 7.1576 -1.2953 -6.0533 36 1 8.4403 -2.9390 -8.0510 37 1 10.5293 1.0696 -4.7785 38 1 9.6973 0.9949 -2.4819 39 1 3.9850 -2.1446 0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611190409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:55 Heat of formation + Delta-G solvation = -25.503930 kcal Electronic energy + Delta-G solvation = -24646.455211 eV Core-core repulsion = 20939.512171 eV Total energy + Delta-G solvation = -3706.943040 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.97549 -41.08867 -39.12801 -38.82047 -36.74722 -36.18270 -34.86006 -32.77694 -31.60023 -31.32929 -30.42161 -28.47700 -26.55549 -25.70119 -23.62934 -23.24326 -22.77384 -21.33270 -19.50782 -19.34676 -19.03661 -18.49090 -17.78904 -17.41694 -17.09116 -16.73349 -16.35007 -15.80999 -15.64330 -15.31352 -15.09803 -14.95349 -14.60297 -14.47517 -14.02051 -13.98534 -13.85300 -13.48077 -13.46725 -13.19909 -13.11461 -12.96923 -12.79988 -12.39832 -11.93663 -11.66865 -11.49773 -11.36308 -11.12995 -11.08568 -10.77807 -10.62813 -9.59144 -9.49316 -9.06186 -8.73837 -6.26817 -0.41003 0.76693 0.78373 1.11325 1.25862 1.32748 1.38799 1.50583 1.67498 2.15651 2.21905 2.60515 2.64724 3.05985 3.45487 3.55270 3.66763 3.77609 3.86338 4.14314 4.27031 4.39397 4.40945 4.43097 4.65410 4.74708 4.80652 4.90426 5.06031 5.10715 5.14908 5.22954 5.38414 5.39521 5.49262 5.62531 5.81840 6.02360 6.05178 6.29413 6.58433 6.63148 6.70015 6.74800 6.86269 6.96394 7.32063 8.17107 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019635 B = 0.002920 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.664962 B = 9585.424568 C =10301.963837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.189 3.811 3 C -0.325 4.325 4 C 0.508 3.492 5 O -0.588 6.588 6 N -0.506 5.506 7 C 0.079 3.921 8 C 0.482 3.518 9 O -0.575 6.575 10 N -0.631 5.631 11 C -0.011 4.011 12 C -0.084 4.084 13 C -0.201 4.201 14 C 0.082 3.918 15 C -0.503 4.503 16 H 0.081 0.919 17 C 0.048 3.952 18 N -0.799 5.799 19 Si 0.970 3.030 20 H -0.254 1.254 21 H -0.266 1.266 22 H -0.261 1.261 23 C -0.237 4.237 24 C -0.088 4.088 25 C 0.393 3.607 26 N -0.555 5.555 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.157 0.843 31 H 0.193 0.807 32 H 0.139 0.861 33 H 0.423 0.577 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.293 0.707 37 H 0.107 0.893 38 H 0.133 0.867 39 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 -2.416 17.172 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.068 3.932 3 C -0.349 4.349 4 C 0.311 3.689 5 O -0.470 6.470 6 N -0.221 5.221 7 C -0.046 4.046 8 C 0.269 3.731 9 O -0.454 6.454 10 N -0.277 5.277 11 C -0.104 4.104 12 C -0.104 4.104 13 C -0.221 4.221 14 C 0.079 3.921 15 C -0.530 4.530 16 H 0.099 0.901 17 C -0.171 4.171 18 N -0.422 5.422 19 Si 0.790 3.210 20 H -0.178 1.178 21 H -0.191 1.191 22 H -0.185 1.185 23 C -0.256 4.256 24 C -0.108 4.108 25 C 0.110 3.890 26 N -0.278 5.278 27 H 0.107 0.893 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.174 0.826 31 H 0.210 0.790 32 H 0.157 0.843 33 H 0.261 0.739 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.151 0.849 39 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -10.260 -2.571 16.516 19.613 hybrid contribution 0.777 0.913 -0.969 1.541 sum -9.483 -1.658 15.547 18.287 Atomic orbital electron populations 1.20924 0.85501 1.05313 1.04672 1.21717 0.99205 0.87136 0.85108 1.22698 0.91875 1.01999 1.18330 1.17681 0.90426 0.82820 0.78016 1.90908 1.68627 1.32964 1.54537 1.46402 1.09653 1.08523 1.57519 1.22103 0.77888 1.11079 0.93510 1.21467 0.82816 0.76467 0.92334 1.90753 1.56385 1.50704 1.47586 1.42648 1.06926 1.71225 1.06853 1.17082 0.99741 1.08945 0.84663 1.20422 0.98396 0.98406 0.93185 1.20623 0.98421 1.07629 0.95409 1.17935 0.90537 0.90107 0.93524 1.19752 1.27170 1.10867 0.95225 0.90072 1.26772 0.91148 0.93109 1.06094 1.69946 1.29775 1.02445 1.40066 0.85392 0.79469 0.79913 0.76239 1.17825 1.19060 1.18506 1.20760 1.01857 1.10160 0.92871 1.20431 0.95888 0.97880 0.96616 1.25965 0.88119 0.91825 0.83052 1.68371 1.06159 1.28630 1.24610 0.89298 0.87694 0.88939 0.82573 0.78971 0.84335 0.73916 0.88672 0.89840 0.89636 0.87468 0.84875 0.73414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.16 71.24 0.72 -0.68 16 2 C 0.19 3.98 6.77 41.83 0.28 4.27 16 3 C -0.32 -8.41 9.74 22.48 0.22 -8.19 16 4 C 0.51 15.67 7.45 84.88 0.63 16.30 16 5 O -0.59 -22.81 16.78 -5.27 -0.09 -22.90 16 6 N -0.51 -11.52 2.06 -659.13 -1.36 -12.87 16 7 C 0.08 1.41 5.86 85.63 0.50 1.91 16 8 C 0.48 14.74 7.70 87.65 0.68 15.42 16 9 O -0.58 -24.50 14.06 -3.01 -0.04 -24.55 16 10 N -0.63 -18.96 5.30 -303.12 -1.61 -20.57 16 11 C -0.01 -0.47 6.25 38.56 0.24 -0.23 16 12 C -0.08 -4.20 8.59 22.13 0.19 -4.01 16 13 C -0.20 -11.14 8.74 22.48 0.20 -10.94 16 14 C 0.08 4.50 5.57 -21.28 -0.12 4.38 16 15 C -0.50 -27.45 8.94 23.39 0.21 -27.24 16 16 H 0.08 4.26 8.02 -2.91 -0.02 4.23 16 17 C 0.05 2.46 4.77 85.24 0.41 2.87 16 18 N -0.80 -41.98 11.77 21.82 0.26 -41.73 16 19 Si 0.97 38.40 29.66 68.60 2.03 40.44 16 20 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 21 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 23 C -0.24 -11.50 9.74 22.48 0.22 -11.28 16 24 C -0.09 -3.70 9.90 22.14 0.22 -3.49 16 25 C 0.39 6.88 11.48 180.32 2.07 8.95 16 26 N -0.56 -11.43 10.31 -187.76 -1.94 -13.37 16 27 H 0.09 1.06 8.12 -2.39 -0.02 1.04 16 28 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 31 H 0.19 0.78 8.02 -2.39 -0.02 0.76 16 32 H 0.14 2.38 7.45 -2.39 -0.02 2.36 16 33 H 0.42 8.24 8.82 -92.71 -0.82 7.42 16 34 H 0.10 4.75 6.46 -2.91 -0.02 4.73 16 35 H 0.08 4.87 6.52 -2.91 -0.02 4.85 16 36 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 37 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 38 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.25 1.71 8.03 -2.91 -0.02 1.69 16 Total: -1.00 -84.54 343.11 4.21 -80.33 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.28 Total: 27.17 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 6.67 Total: -11.95 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -4.64 Total: -88.54 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -0.13 Total: -47.45 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.44 kcal Total: -84.54 4.21 -80.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611190409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.826 kcal (2) G-P(sol) polarization free energy of solvation -84.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds