Wall clock time and date at job start Tue Mar 31 2020 10:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86801 * 119.99646 * 2 1 4 4 H 1.48498 * 109.47045 * 240.00116 * 3 2 1 5 5 H 1.48497 * 109.47312 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46666 * 120.00615 * 3 2 1 7 7 C 1.40029 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99542 * 196.86242 * 7 2 1 9 9 C 1.41543 * 120.00277 * 16.86163 * 7 2 1 10 10 C 1.41185 * 120.99606 * 203.63441 * 9 7 2 11 11 C 1.37579 * 119.02153 * 179.97438 * 10 9 7 12 12 N 1.32093 * 121.10981 * 359.97438 * 11 10 9 13 13 C 1.32474 * 122.22646 * 0.02562 * 12 11 10 14 14 N 1.39392 * 119.57940 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99543 * 5.22087 * 14 13 12 16 16 O 1.21612 * 120.00762 * 355.14647 * 15 14 13 17 17 C 1.47386 * 119.99893 * 175.13792 * 15 14 13 18 18 C 1.36113 * 126.45433 * 180.02562 * 17 15 14 19 19 O 1.34258 * 106.94744 * 179.72403 * 18 17 15 20 20 C 1.34051 * 108.22787 * 0.41740 * 19 18 17 21 21 C 1.50700 * 125.37820 * 179.83283 * 20 19 18 22 22 C 1.53781 * 113.61274 * 322.20190 * 21 20 19 23 23 C 1.53780 * 87.08146 * 89.11536 * 22 21 20 24 24 C 1.53777 * 87.08128 * 25.43108 * 23 22 21 25 25 N 1.29935 * 109.24983 * 359.57586 * 20 19 18 26 26 C 1.38624 * 120.83888 * 0.26226 * 13 12 11 27 27 H 0.97002 * 120.00090 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.48709 * 0.02562 * 10 9 7 29 29 H 1.07996 * 119.44639 * 179.97438 * 11 10 9 30 30 H 0.96997 * 120.00252 * 185.22674 * 14 13 12 31 31 H 1.08006 * 126.52653 * 359.97438 * 18 17 15 32 32 H 1.09000 * 112.90955 * 190.95077 * 21 20 19 33 33 H 1.09001 * 113.61618 * 203.66589 * 22 21 20 34 34 H 1.09000 * 113.61686 * 334.56433 * 22 21 20 35 35 H 1.09000 * 113.61224 * 270.88328 * 23 22 21 36 36 H 1.09000 * 113.69200 * 139.99226 * 23 22 21 37 37 H 1.08992 * 113.61740 * 220.01800 * 24 23 22 38 38 H 1.09001 * 113.61023 * 89.11488 * 24 23 22 39 39 H 1.08001 * 120.60073 * 179.72323 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6963 1.2124 7 6 2.0076 -1.2127 -0.0005 8 1 3.0528 -1.2329 0.2708 9 6 1.3456 -2.4120 -0.3566 10 6 1.8232 -3.6650 0.0853 11 6 1.1477 -4.8050 -0.2846 12 7 0.0668 -4.7427 -1.0413 13 6 -0.4218 -3.5928 -1.4818 14 7 -1.5661 -3.5913 -2.2778 15 6 -2.2283 -4.7424 -2.5079 16 8 -1.7800 -5.7949 -2.0955 17 6 -3.4961 -4.7255 -3.2594 18 6 -4.2695 -5.8031 -3.5649 19 8 -5.3294 -5.3429 -4.2485 20 6 -5.2058 -4.0136 -4.3688 21 6 -6.1820 -3.1066 -5.0726 22 6 -6.7859 -3.7215 -6.3462 23 6 -7.8908 -4.3018 -5.4477 24 6 -7.5990 -3.1458 -4.4764 25 7 -4.1140 -3.6297 -3.7781 26 6 0.1938 -2.3916 -1.1661 27 1 -0.4850 0.8401 0.0004 28 1 2.7053 -3.7275 0.7053 29 1 1.5073 -5.7671 0.0492 30 1 -1.8856 -2.7619 -2.6662 31 1 -4.0707 -6.8320 -3.3033 32 1 -5.7962 -2.0973 -5.2156 33 1 -7.1473 -2.9809 -7.0597 34 1 -6.1538 -4.4808 -6.8066 35 1 -7.6517 -5.2845 -5.0412 36 1 -8.8850 -4.2581 -5.8924 37 1 -7.6233 -3.4403 -3.4273 38 1 -8.1828 -2.2478 -4.6787 39 1 -0.2053 -1.4567 -1.5310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618116450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:17 Heat of formation + Delta-G solvation = 46.462437 kcal Electronic energy + Delta-G solvation = -24527.845807 eV Core-core repulsion = 20824.023463 eV Total energy + Delta-G solvation = -3703.822344 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.52416 -39.51684 -38.94815 -37.70412 -34.87297 -34.34410 -33.67886 -30.69802 -30.45798 -28.61994 -26.30645 -26.05757 -25.99856 -24.34676 -22.35832 -21.96746 -21.35523 -20.09656 -19.27813 -17.73764 -17.61914 -16.87393 -16.69465 -15.98627 -15.60447 -15.47257 -15.19948 -14.46589 -14.23105 -14.17453 -13.77871 -13.57519 -13.41657 -12.94564 -12.78205 -12.75754 -12.61136 -12.34693 -11.46850 -11.30747 -11.21247 -11.18818 -10.90139 -10.83610 -10.81536 -10.79493 -10.32165 -10.19256 -9.77457 -9.65144 -9.33807 -9.01323 -8.00716 -7.76188 -7.03100 -6.80767 -4.60649 1.12100 1.97090 2.46052 2.75163 2.81446 3.01846 3.04476 3.25880 3.41376 3.72453 3.79491 3.85522 4.16965 4.23140 4.48018 4.61884 4.67928 4.83600 4.97568 5.25692 5.28413 5.40573 5.44619 5.55464 5.58419 5.59183 5.68663 5.73456 5.85935 5.99417 6.12180 6.58282 6.66038 6.80514 6.95329 7.10716 7.37729 7.41303 7.47396 7.78674 7.94238 8.20618 8.39999 8.68834 8.74438 8.83413 9.67885 10.07063 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.003112 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.749211 B = 8995.068583 C =10502.757347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.078 3.922 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.143 3.857 10 C -0.284 4.284 11 C 0.119 3.881 12 N -0.557 5.557 13 C 0.335 3.665 14 N -0.638 5.638 15 C 0.585 3.415 16 O -0.477 6.477 17 C -0.060 4.060 18 C 0.003 3.997 19 O -0.195 6.195 20 C 0.211 3.789 21 C -0.023 4.023 22 C -0.131 4.131 23 C -0.145 4.145 24 C -0.130 4.130 25 N -0.454 5.454 26 C -0.239 4.239 27 H 0.283 0.717 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.416 0.584 31 H 0.231 0.769 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.772 -2.730 -10.781 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.135 3.865 10 C -0.308 4.308 11 C -0.035 4.035 12 N -0.276 5.276 13 C 0.111 3.889 14 N -0.283 5.283 15 C 0.369 3.631 16 O -0.348 6.348 17 C -0.181 4.181 18 C -0.070 4.070 19 O -0.081 6.081 20 C 0.002 3.998 21 C -0.042 4.042 22 C -0.169 4.169 23 C -0.182 4.182 24 C -0.168 4.168 25 N -0.183 5.183 26 C -0.265 4.265 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.142 0.858 30 H 0.252 0.748 31 H 0.248 0.752 32 H 0.140 0.860 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.944 -3.531 -10.680 18.704 hybrid contribution 0.477 1.330 0.200 1.427 sum -14.466 -2.202 -10.481 17.999 Atomic orbital electron populations 1.69776 1.07697 1.29619 1.33912 1.25976 0.94771 1.01526 0.91900 0.86299 0.80121 0.79839 0.80105 1.18689 1.20228 1.18880 1.19545 0.97904 0.90699 1.40468 0.89937 1.17556 0.89798 0.92327 0.86815 1.21887 1.05274 0.93856 1.09789 1.21754 0.90873 0.96865 0.93994 1.67207 1.15611 1.26448 1.18358 1.18151 0.87079 0.90986 0.92657 1.43177 1.25569 1.10646 1.48943 1.16846 0.81672 0.84810 0.79800 1.90903 1.65769 1.29754 1.48379 1.22103 1.00063 0.89404 1.06514 1.25279 0.85294 1.00968 0.95463 1.84347 1.41415 1.24445 1.57882 1.25538 0.95218 0.79468 0.99565 1.20632 0.91545 0.96335 0.95712 1.22980 0.97794 1.00717 0.95422 1.22982 0.99191 0.98792 0.97273 1.22989 0.93815 0.99911 1.00126 1.70790 1.06062 1.29906 1.11588 1.21544 1.02410 0.95517 1.07002 0.90567 0.87920 0.85798 0.74775 0.75243 0.86017 0.88478 0.90753 0.89612 0.90851 0.90795 0.88372 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.67 10.93 55.55 0.61 -19.06 16 2 C 0.08 1.90 5.20 -17.34 -0.09 1.81 16 3 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.80 9.12 -37.65 -0.34 -12.14 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 9 C 0.14 3.83 5.60 -106.55 -0.60 3.23 16 10 C -0.28 -7.06 9.90 -38.70 -0.38 -7.44 16 11 C 0.12 2.91 11.15 -17.68 -0.20 2.71 16 12 N -0.56 -14.56 7.85 -12.54 -0.10 -14.66 16 13 C 0.34 8.50 7.41 -154.77 -1.15 7.36 16 14 N -0.64 -13.93 5.38 -12.48 -0.07 -14.00 16 15 C 0.59 12.20 7.77 -12.54 -0.10 12.10 16 16 O -0.48 -11.23 15.14 5.27 0.08 -11.15 16 17 C -0.06 -1.01 6.99 -83.02 -0.58 -1.59 16 18 C 0.00 0.04 11.95 29.97 0.36 0.40 16 19 O -0.19 -2.36 9.52 6.51 0.06 -2.30 16 20 C 0.21 2.64 7.19 -13.08 -0.09 2.55 16 21 C -0.02 -0.20 4.49 -90.96 -0.41 -0.61 16 22 C -0.13 -0.87 7.62 -25.92 -0.20 -1.07 16 23 C -0.15 -0.95 7.71 -25.92 -0.20 -1.15 16 24 C -0.13 -0.92 7.66 -25.92 -0.20 -1.12 16 25 N -0.45 -7.09 11.06 -7.66 -0.08 -7.17 16 26 C -0.24 -6.26 8.62 -38.47 -0.33 -6.59 16 27 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 28 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 29 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 30 H 0.42 8.19 8.43 -40.82 -0.34 7.85 16 31 H 0.23 2.38 8.06 -52.48 -0.42 1.95 16 32 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.09 0.65 7.24 -51.93 -0.38 0.27 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.13 3.35 6.20 -52.49 -0.33 3.02 16 LS Contribution 340.16 15.07 5.13 5.13 Total: -1.00 -32.04 340.16 -8.31 -40.35 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -4.39 Total: 11.40 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -4.51 Total: -1.56 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.36 Total: -54.89 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.14 Total: -13.45 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.04 -8.31 -40.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618116450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.812 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds