Wall clock time and date at job start Tue Mar 31 2020 10:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86801 * 119.99646 * 2 1 4 4 H 1.48498 * 109.47045 * 240.00116 * 3 2 1 5 5 H 1.48497 * 109.47312 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46666 * 120.00615 * 3 2 1 7 7 C 1.40029 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99542 * 196.86242 * 7 2 1 9 9 C 1.41543 * 120.00277 * 16.86163 * 7 2 1 10 10 C 1.41185 * 120.99606 * 203.63441 * 9 7 2 11 11 C 1.37579 * 119.02153 * 179.97438 * 10 9 7 12 12 N 1.32093 * 121.10981 * 359.97438 * 11 10 9 13 13 C 1.32474 * 122.22646 * 0.02562 * 12 11 10 14 14 N 1.39392 * 119.57940 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99543 * 5.22087 * 14 13 12 16 16 O 1.21612 * 120.00762 * 355.14647 * 15 14 13 17 17 C 1.47386 * 119.99893 * 175.13792 * 15 14 13 18 18 C 1.36113 * 126.45433 * 180.02562 * 17 15 14 19 19 O 1.34258 * 106.94744 * 179.72403 * 18 17 15 20 20 C 1.34051 * 108.22787 * 0.41740 * 19 18 17 21 21 C 1.50700 * 125.37820 * 179.83283 * 20 19 18 22 22 C 1.53781 * 113.61274 * 322.20190 * 21 20 19 23 23 C 1.53780 * 87.08146 * 89.11536 * 22 21 20 24 24 C 1.53777 * 87.08128 * 25.43108 * 23 22 21 25 25 N 1.29935 * 109.24983 * 359.57586 * 20 19 18 26 26 C 1.38624 * 120.83888 * 0.26226 * 13 12 11 27 27 H 0.97002 * 120.00090 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.48709 * 0.02562 * 10 9 7 29 29 H 1.07996 * 119.44639 * 179.97438 * 11 10 9 30 30 H 0.96997 * 120.00252 * 185.22674 * 14 13 12 31 31 H 1.08006 * 126.52653 * 359.97438 * 18 17 15 32 32 H 1.09000 * 112.90955 * 190.95077 * 21 20 19 33 33 H 1.09001 * 113.61618 * 203.66589 * 22 21 20 34 34 H 1.09000 * 113.61686 * 334.56433 * 22 21 20 35 35 H 1.09000 * 113.61224 * 270.88328 * 23 22 21 36 36 H 1.09000 * 113.69200 * 139.99226 * 23 22 21 37 37 H 1.08992 * 113.61740 * 220.01800 * 24 23 22 38 38 H 1.09001 * 113.61023 * 89.11488 * 24 23 22 39 39 H 1.08001 * 120.60073 * 179.72323 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6963 1.2124 7 6 2.0076 -1.2127 -0.0005 8 1 3.0528 -1.2329 0.2708 9 6 1.3456 -2.4120 -0.3566 10 6 1.8232 -3.6650 0.0853 11 6 1.1477 -4.8050 -0.2846 12 7 0.0668 -4.7427 -1.0413 13 6 -0.4218 -3.5928 -1.4818 14 7 -1.5661 -3.5913 -2.2778 15 6 -2.2283 -4.7424 -2.5079 16 8 -1.7800 -5.7949 -2.0955 17 6 -3.4961 -4.7255 -3.2594 18 6 -4.2695 -5.8031 -3.5649 19 8 -5.3294 -5.3429 -4.2485 20 6 -5.2058 -4.0136 -4.3688 21 6 -6.1820 -3.1066 -5.0726 22 6 -6.7859 -3.7215 -6.3462 23 6 -7.8908 -4.3018 -5.4477 24 6 -7.5990 -3.1458 -4.4764 25 7 -4.1140 -3.6297 -3.7781 26 6 0.1938 -2.3916 -1.1661 27 1 -0.4850 0.8401 0.0004 28 1 2.7053 -3.7275 0.7053 29 1 1.5073 -5.7671 0.0492 30 1 -1.8856 -2.7619 -2.6662 31 1 -4.0707 -6.8320 -3.3033 32 1 -5.7962 -2.0973 -5.2156 33 1 -7.1473 -2.9809 -7.0597 34 1 -6.1538 -4.4808 -6.8066 35 1 -7.6517 -5.2845 -5.0412 36 1 -8.8850 -4.2581 -5.8924 37 1 -7.6233 -3.4403 -3.4273 38 1 -8.1828 -2.2478 -4.6787 39 1 -0.2053 -1.4567 -1.5310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618116450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:16 Heat of formation + Delta-G solvation = 25.309426 kcal Electronic energy + Delta-G solvation = -24528.763071 eV Core-core repulsion = 20824.023463 eV Total energy + Delta-G solvation = -3704.739607 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.60842 -41.25311 -39.69678 -39.41346 -36.21676 -36.05463 -35.46882 -32.52073 -31.73856 -30.42610 -27.95066 -27.06115 -26.58250 -25.77889 -23.88934 -23.43049 -22.76872 -21.59795 -20.39192 -19.48473 -18.97936 -17.94657 -17.85196 -17.51092 -17.01399 -16.58327 -16.23155 -16.14577 -16.09665 -15.79108 -15.39493 -14.86234 -14.51753 -14.38873 -14.25537 -14.22368 -13.53045 -13.27643 -13.22695 -12.94097 -12.66636 -12.45365 -12.14292 -11.98407 -11.95553 -11.70632 -11.59238 -11.45123 -11.42436 -11.30306 -11.17477 -10.12758 -9.99340 -9.70352 -8.93062 -8.67680 -6.58994 -0.06284 0.63622 0.97109 1.05536 1.40117 1.44745 1.52108 1.58734 1.94053 2.18511 2.21958 2.64383 2.78945 3.44349 3.57163 3.64360 3.71336 3.74744 3.93838 4.06750 4.19259 4.38495 4.52658 4.70198 4.72195 4.77237 4.84651 4.85504 4.89753 4.94385 5.02782 5.04015 5.08085 5.15517 5.19120 5.44434 5.49557 5.56340 5.85901 6.02625 6.30620 6.47043 6.50449 6.75914 6.79742 7.08302 7.75270 8.23870 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.003112 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.749211 B = 8995.068583 C =10502.757347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.038 3.962 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.482 4.482 8 H 0.088 0.912 9 C 0.114 3.886 10 C -0.296 4.296 11 C 0.115 3.885 12 N -0.580 5.580 13 C 0.331 3.669 14 N -0.639 5.639 15 C 0.586 3.414 16 O -0.511 6.511 17 C -0.098 4.098 18 C 0.035 3.965 19 O -0.184 6.184 20 C 0.224 3.776 21 C -0.038 4.038 22 C -0.121 4.121 23 C -0.143 4.143 24 C -0.124 4.124 25 N -0.485 5.485 26 C -0.259 4.259 27 H 0.293 0.707 28 H 0.120 0.880 29 H 0.156 0.844 30 H 0.422 0.578 31 H 0.260 0.740 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.122 0.878 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.139 -1.911 -11.822 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.180 4.180 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.513 4.513 8 H 0.106 0.894 9 C 0.106 3.894 10 C -0.320 4.320 11 C -0.038 4.038 12 N -0.300 5.300 13 C 0.106 3.894 14 N -0.284 5.284 15 C 0.372 3.628 16 O -0.384 6.384 17 C -0.217 4.217 18 C -0.040 4.040 19 O -0.070 6.070 20 C 0.014 3.986 21 C -0.057 4.057 22 C -0.159 4.159 23 C -0.180 4.180 24 C -0.162 4.162 25 N -0.215 5.215 26 C -0.285 4.285 27 H 0.104 0.896 28 H 0.138 0.862 29 H 0.173 0.827 30 H 0.260 0.740 31 H 0.276 0.724 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.141 0.859 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.329 -2.714 -11.729 20.287 hybrid contribution 0.794 1.052 0.497 1.408 sum -15.535 -1.663 -11.231 19.241 Atomic orbital electron populations 1.69826 1.09239 1.31207 1.33345 1.26904 0.95537 1.04848 0.90699 0.85132 0.78709 0.74946 0.80230 1.18341 1.19032 1.18137 1.19876 0.98390 0.91567 1.41420 0.89378 1.18000 0.90419 0.93607 0.87355 1.22096 1.06070 0.93519 1.10308 1.22273 0.90255 0.98157 0.93148 1.67329 1.16542 1.26727 1.19392 1.18373 0.87759 0.90708 0.92565 1.43209 1.24915 1.11625 1.48668 1.17286 0.82472 0.83815 0.79186 1.90860 1.67061 1.30518 1.49930 1.21597 0.99696 0.91320 1.09077 1.25763 0.84040 1.01246 0.92911 1.84417 1.40713 1.24459 1.57394 1.26353 0.94610 0.79750 0.97891 1.21001 0.91658 0.95954 0.97104 1.23020 0.97182 1.00890 0.94781 1.22972 1.00222 0.97858 0.96969 1.23045 0.92600 1.01257 0.99327 1.70731 1.07528 1.30077 1.13141 1.21504 1.03247 0.95507 1.08204 0.89621 0.86182 0.82726 0.74041 0.72441 0.85391 0.85926 0.91558 0.90903 0.88906 0.92266 0.85936 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.12 10.93 21.84 0.24 -40.88 16 2 C 0.04 1.84 5.20 85.29 0.44 2.28 16 3 Si 0.99 36.46 29.59 68.60 2.03 38.49 16 4 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 5 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 6 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 7 C -0.48 -25.37 9.12 23.52 0.21 -25.15 16 8 H 0.09 4.38 7.90 -2.91 -0.02 4.35 16 9 C 0.11 6.28 5.60 -21.12 -0.12 6.16 16 10 C -0.30 -14.97 9.90 22.84 0.23 -14.74 16 11 C 0.12 5.68 11.15 84.50 0.94 6.62 16 12 N -0.58 -31.05 7.85 -193.57 -1.52 -32.56 16 13 C 0.33 17.40 7.41 132.78 0.98 18.39 16 14 N -0.64 -29.04 5.38 -311.65 -1.68 -30.71 16 15 C 0.59 25.15 7.77 86.65 0.67 25.82 16 16 O -0.51 -24.60 15.14 -4.07 -0.06 -24.66 16 17 C -0.10 -3.32 6.99 40.40 0.28 -3.03 16 18 C 0.03 0.88 11.95 67.33 0.80 1.69 16 19 O -0.18 -4.19 9.52 0.37 0.00 -4.18 16 20 C 0.22 5.38 7.19 88.39 0.64 6.01 16 21 C -0.04 -0.59 4.49 -11.01 -0.05 -0.64 16 22 C -0.12 -1.27 7.62 31.12 0.24 -1.04 16 23 C -0.14 -1.48 7.71 31.12 0.24 -1.24 16 24 C -0.12 -1.46 7.66 31.12 0.24 -1.22 16 25 N -0.49 -15.21 11.06 -293.04 -3.24 -18.45 16 26 C -0.26 -14.09 8.62 22.99 0.20 -13.89 16 27 H 0.29 13.33 8.29 -92.71 -0.77 12.56 16 28 H 0.12 5.46 8.06 -2.91 -0.02 5.44 16 29 H 0.16 6.44 8.06 -2.91 -0.02 6.42 16 30 H 0.42 17.50 8.43 -92.71 -0.78 16.72 16 31 H 0.26 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 35 H 0.07 0.95 7.24 -2.39 -0.02 0.94 16 36 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.06 0.88 8.09 -2.39 -0.02 0.87 16 38 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.12 6.58 6.20 -2.91 -0.02 6.56 16 Total: -1.00 -71.17 340.16 2.05 -69.12 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: 0.33 Total: 37.82 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 5.95 Total: 6.02 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -6.20 Total: -122.61 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.06 Total: -28.84 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Total: -71.17 2.05 -69.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618116450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.428 kcal (2) G-P(sol) polarization free energy of solvation -71.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds