Wall clock time and date at job start Tue Mar 31 2020 10:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86800 * 120.00197 * 2 1 4 4 H 1.48499 * 109.47223 * 270.00052 * 3 2 1 5 5 H 1.48499 * 109.47046 * 29.99882 * 3 2 1 6 6 H 1.48492 * 109.47326 * 149.99649 * 3 2 1 7 7 C 1.38655 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99944 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.35743 * 117.00323 * 185.06067 * 9 7 2 11 11 C 1.38884 * 120.06847 * 354.45893 * 10 9 7 12 12 C 1.38100 * 119.93123 * 180.02562 * 11 10 9 13 13 C 1.38309 * 120.06951 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.92835 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47436 * 90.00063 * 14 13 12 16 16 O 1.21280 * 119.99946 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00040 * 179.97438 * 15 14 13 18 18 C 1.46498 * 119.99904 * 179.97438 * 17 15 14 19 19 C 1.50705 * 109.47301 * 180.02562 * 18 17 15 20 20 N 1.31797 * 119.11915 * 269.72919 * 19 18 17 21 21 C 1.32331 * 120.81673 * 179.75554 * 20 19 18 22 22 C 1.38595 * 119.10674 * 0.50645 * 21 20 19 23 23 C 1.38607 * 118.39776 * 359.75027 * 22 21 20 24 24 N 1.31795 * 119.12389 * 89.99657 * 19 18 17 25 25 C 1.38300 * 120.13476 * 0.25178 * 13 12 11 26 26 C 1.38103 * 120.07235 * 359.45128 * 25 13 12 27 27 H 0.97002 * 119.99992 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.03050 * 0.02562 * 11 10 9 29 29 H 1.08003 * 119.96708 * 180.02562 * 12 11 10 30 30 H 1.08999 * 109.46626 * 209.99947 * 14 13 12 31 31 H 1.09004 * 109.47318 * 329.99490 * 14 13 12 32 32 H 0.96999 * 120.00482 * 359.97438 * 17 15 14 33 33 H 1.09007 * 109.47104 * 299.99606 * 18 17 15 34 34 H 1.08996 * 109.47508 * 59.99551 * 18 17 15 35 35 H 1.08002 * 120.44712 * 180.23233 * 21 20 19 36 36 H 1.08001 * 120.80474 * 179.77226 * 22 21 20 37 37 H 1.08000 * 120.44863 * 180.02562 * 23 22 21 38 38 H 1.08004 * 119.96372 * 179.70276 * 25 13 12 39 39 H 1.07998 * 120.03412 * 180.26808 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5045 0.1078 11 6 3.4572 -3.4394 0.0953 12 6 4.2023 -4.5971 0.2040 13 6 3.5685 -5.8204 0.3247 14 6 4.3847 -7.0817 0.4426 15 6 4.6632 -7.3659 1.8961 16 8 4.2408 -6.6177 2.7520 17 7 5.3816 -8.4516 2.2448 18 6 5.6527 -8.7276 3.6578 19 6 6.4689 -9.9890 3.7757 20 7 5.8484 -11.1456 3.8959 21 6 6.5317 -12.2743 3.9969 22 6 7.9168 -12.2271 3.9856 23 6 8.5334 -10.9918 3.8629 24 7 7.7841 -9.9057 3.7612 25 6 2.1872 -5.8891 0.3317 26 6 1.4365 -4.7345 0.2295 27 1 -0.4850 0.8401 -0.0004 28 1 3.9526 -2.4845 0.0006 29 1 5.2812 -4.5471 0.1948 30 1 3.8311 -7.9145 0.0091 31 1 5.3274 -6.9556 -0.0901 32 1 5.7191 -9.0503 1.5603 33 1 6.2070 -7.8949 4.0908 34 1 4.7103 -8.8530 4.1909 35 1 6.0171 -13.2190 4.0914 36 1 8.5017 -13.1311 4.0700 37 1 9.6107 -10.9166 3.8499 38 1 1.6952 -6.8463 0.4213 39 1 0.3579 -4.7884 0.2394 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770060562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:22 Heat of formation + Delta-G solvation = 15.644995 kcal Electronic energy + Delta-G solvation = -23578.217965 eV Core-core repulsion = 19873.059277 eV Total energy + Delta-G solvation = -3705.158689 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57204 -39.70356 -38.70728 -36.49489 -35.15157 -34.24270 -32.64772 -32.33610 -31.25505 -30.06925 -28.08665 -26.18853 -25.07934 -24.97676 -23.08462 -21.89171 -21.09365 -20.08739 -18.07117 -17.92823 -17.87644 -16.89542 -16.77253 -16.28965 -15.60896 -15.38789 -15.02155 -14.50034 -14.46050 -14.15279 -14.07247 -13.78442 -13.52025 -13.38488 -13.16991 -13.02729 -12.62187 -12.35786 -11.76567 -11.43408 -11.40880 -11.36569 -11.20400 -10.78403 -10.69945 -10.54699 -10.37094 -10.29809 -9.76057 -9.65194 -9.25072 -9.18425 -8.75557 -8.06685 -7.08632 -6.38093 -3.96442 0.25347 0.55601 2.32295 2.33845 2.80710 2.94256 3.17461 3.18993 3.23745 3.28246 3.60064 3.62676 4.02984 4.05655 4.43515 4.53420 4.60801 4.74421 5.03662 5.07341 5.15616 5.31977 5.32467 5.39013 5.43481 5.52814 5.73042 5.81230 5.81936 5.93120 6.24076 6.29783 6.44291 6.50114 6.78435 6.99636 7.13059 7.31624 7.42419 7.45240 7.52871 7.55034 7.92134 8.07436 8.32617 9.07740 9.78911 10.80133 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.033432 B = 0.002071 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.309789 B =13518.068132 C =13916.675501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.157 3.843 11 C -0.232 4.232 12 C -0.056 4.056 13 C -0.170 4.170 14 C -0.077 4.077 15 C 0.513 3.487 16 O -0.516 6.516 17 N -0.733 5.733 18 C 0.191 3.809 19 C 0.305 3.695 20 N -0.504 5.504 21 C 0.148 3.852 22 C -0.225 4.225 23 C 0.148 3.852 24 N -0.504 5.504 25 C -0.059 4.059 26 C -0.191 4.191 27 H 0.269 0.731 28 H 0.126 0.874 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.398 0.602 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.171 0.829 36 H 0.150 0.850 37 H 0.171 0.829 38 H 0.109 0.891 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.792 -25.153 4.740 30.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.103 3.897 11 C -0.252 4.252 12 C -0.074 4.074 13 C -0.171 4.171 14 C -0.117 4.117 15 C 0.300 3.700 16 O -0.389 6.389 17 N -0.388 5.388 18 C 0.065 3.935 19 C 0.036 3.964 20 N -0.218 5.218 21 C -0.018 4.018 22 C -0.247 4.247 23 C -0.018 4.018 24 N -0.218 5.218 25 C -0.078 4.078 26 C -0.211 4.211 27 H 0.079 0.921 28 H 0.144 0.856 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.231 0.769 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.189 0.811 36 H 0.168 0.832 37 H 0.188 0.812 38 H 0.127 0.873 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.485 -23.508 5.301 28.644 hybrid contribution 1.380 -0.510 -0.109 1.476 sum 16.865 -24.018 5.192 29.803 Atomic orbital electron populations 1.70043 1.05932 1.27554 1.46373 1.25284 0.95844 0.98804 0.96670 0.85715 0.78958 0.80151 0.78622 1.19940 1.20299 1.19201 1.21326 0.91799 0.80862 1.52638 0.89089 1.83973 1.34360 1.11451 1.78448 1.19385 0.90300 0.88026 0.91996 1.21104 0.93803 0.98757 1.11506 1.20516 0.98064 0.91762 0.97100 1.18624 0.93204 0.92730 1.12590 1.20389 1.01282 0.98160 0.91889 1.21073 0.77037 0.79547 0.92338 1.90763 1.49540 1.46615 1.51984 1.45918 1.57444 1.28515 1.06894 1.19860 0.98378 0.90555 0.84665 1.23199 0.87779 0.93530 0.91850 1.68325 1.41897 0.98886 1.12676 1.23339 0.91483 0.97069 0.89946 1.23015 0.97420 1.00887 1.03415 1.23344 1.01073 0.87578 0.89840 1.68326 1.07069 1.33386 1.13001 1.20408 0.92755 0.96732 0.97857 1.20154 0.99483 0.90281 1.11157 0.92103 0.85597 0.87789 0.88896 0.88934 0.76901 0.88809 0.88784 0.81147 0.83187 0.81150 0.87341 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.98 13.67 55.48 0.76 -25.22 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 8 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 9 O -0.18 -5.30 9.76 0.07 0.00 -5.30 16 10 C 0.16 3.98 6.65 -39.10 -0.26 3.72 16 11 C -0.23 -5.34 9.17 -39.39 -0.36 -5.70 16 12 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 13 C -0.17 -3.05 4.38 -104.58 -0.46 -3.50 16 14 C -0.08 -1.00 5.83 -29.04 -0.17 -1.17 16 15 C 0.51 7.34 7.82 -10.99 -0.09 7.26 16 16 O -0.52 -9.92 16.03 5.56 0.09 -9.83 16 17 N -0.73 -7.98 5.55 -61.47 -0.34 -8.32 16 18 C 0.19 2.09 6.11 -5.19 -0.03 2.06 16 19 C 0.30 2.98 7.01 -157.19 -1.10 1.88 16 20 N -0.50 -4.60 10.33 -10.72 -0.11 -4.71 16 21 C 0.15 0.85 11.30 -17.20 -0.19 0.66 16 22 C -0.23 -0.95 10.17 -39.31 -0.40 -1.35 16 23 C 0.15 0.86 11.31 -17.20 -0.19 0.66 16 24 N -0.50 -4.62 10.33 -10.72 -0.11 -4.73 16 25 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16 26 C -0.19 -4.29 9.99 -39.39 -0.39 -4.68 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 29 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 30 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 31 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.40 3.38 8.46 -40.82 -0.35 3.03 16 33 H 0.09 1.10 8.14 -51.92 -0.42 0.67 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.17 0.45 8.06 -52.49 -0.42 0.02 16 36 H 0.15 0.14 8.06 -52.49 -0.42 -0.29 16 37 H 0.17 0.45 8.06 -52.49 -0.42 0.03 16 38 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 39 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -36.80 349.07 -7.97 -44.77 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.27 Total: 5.10 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -4.22 Total: -13.14 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.20 Total: -42.98 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.09 Total: -15.12 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.80 -7.97 -44.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770060562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.417 kcal (2) G-P(sol) polarization free energy of solvation -36.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds