Wall clock time and date at job start Tue Mar 31 2020 10:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38613 * 120.73503 * 2 1 4 4 N 1.32281 * 119.18533 * 179.97438 * 3 2 1 5 5 C 1.32407 * 120.75090 * 0.02562 * 4 3 2 6 6 N 1.38936 * 119.20122 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99550 * 179.97438 * 6 5 4 8 8 O 1.21269 * 120.00075 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99728 * 179.97438 * 7 6 5 10 10 C 1.50698 * 109.46930 * 180.02562 * 9 7 6 11 11 C 1.38297 * 119.93202 * 89.99982 * 10 9 7 12 12 C 1.38101 * 120.07230 * 180.02562 * 11 10 9 13 13 C 1.38886 * 119.92536 * 359.97438 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47517 * 59.99414 * 19 17 15 21 21 H 1.48505 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46989 * 299.99567 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38110 * 119.92772 * 359.48927 * 23 13 12 25 25 N 1.32409 * 121.59086 * 0.24605 * 5 4 3 26 26 C 1.32271 * 120.75058 * 359.48976 * 25 5 4 27 27 H 1.09000 * 109.47612 * 89.99434 * 1 2 3 28 28 H 1.08998 * 109.47508 * 210.00175 * 1 2 3 29 29 H 1.09008 * 109.47027 * 330.00124 * 1 2 3 30 30 H 1.08001 * 120.40795 * 359.95792 * 3 2 1 31 31 H 0.96995 * 120.00034 * 0.02562 * 6 5 4 32 32 H 1.09003 * 109.46768 * 60.00063 * 9 7 6 33 33 H 1.09004 * 109.46918 * 300.00219 * 9 7 6 34 34 H 1.07999 * 119.96698 * 0.02562 * 11 10 9 35 35 H 1.07992 * 120.03608 * 179.97438 * 12 11 10 36 36 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 37 37 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 38 38 H 1.07996 * 119.96227 * 180.23396 * 24 23 13 39 39 H 1.08005 * 120.40716 * 180.25641 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2153 1.1914 0.0000 4 7 3.5377 1.1557 0.0005 5 6 4.1836 -0.0001 0.0005 6 7 5.5730 -0.0001 0.0005 7 6 6.2468 -1.1674 0.0011 8 8 5.6404 -2.2176 0.0011 9 6 7.7539 -1.1675 0.0005 10 6 8.2561 -2.5883 0.0006 11 6 8.4856 -3.2392 -1.1978 12 6 8.9454 -4.5414 -1.2011 13 6 9.1777 -5.1972 0.0009 14 8 9.6301 -6.4771 0.0010 15 6 9.9430 -7.0158 -1.1947 16 1 9.7526 -6.4628 -2.1026 17 6 10.5091 -8.2800 -1.2587 18 7 10.7415 -8.9535 -0.1528 19 14 10.9432 -9.0261 -2.9153 20 1 11.9281 -8.1564 -3.6072 21 1 11.5311 -10.3746 -2.7121 22 1 9.7159 -9.1403 -3.7436 23 6 8.9413 -4.5427 1.2027 24 6 8.4861 -3.2387 1.1993 25 7 3.5375 -1.1559 -0.0048 26 6 2.2153 -1.1915 -0.0003 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5139 30 1 1.6941 2.1373 -0.0007 31 1 6.0580 0.8399 0.0009 32 1 8.1175 -0.6530 0.8900 33 1 8.1168 -0.6542 -0.8900 34 1 8.3051 -2.7286 -2.1322 35 1 9.1240 -5.0492 -2.1373 36 1 11.1372 -9.8379 -0.1976 37 1 9.1168 -5.0514 2.1390 38 1 8.3056 -2.7280 2.1336 39 1 1.6939 -2.1374 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772291718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:11 Heat of formation + Delta-G solvation = 4.268017 kcal Electronic energy + Delta-G solvation = -23983.104471 eV Core-core repulsion = 20277.452440 eV Total energy + Delta-G solvation = -3705.652031 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.33234 -41.00549 -40.31404 -38.25448 -36.29292 -34.72603 -34.40842 -33.82581 -32.71134 -31.77969 -28.82017 -27.66516 -26.83223 -25.81900 -23.88976 -23.64104 -22.53351 -21.47242 -19.86864 -19.62673 -18.81428 -18.67138 -17.33678 -16.96911 -16.51780 -16.37465 -16.18983 -15.77378 -15.54501 -15.49287 -15.25772 -15.03722 -14.82335 -14.42222 -14.39428 -14.16463 -13.86930 -13.59176 -13.11087 -12.96690 -12.82841 -12.46828 -12.32974 -12.29253 -12.14861 -12.11372 -11.91483 -11.71092 -11.18532 -11.00054 -10.77179 -9.98810 -9.76375 -9.50489 -8.91913 -8.47402 -6.15723 -0.11521 0.15841 0.61677 0.63404 1.33634 1.44067 1.50395 1.62089 1.63636 2.17710 2.80931 2.85786 3.11584 3.20690 3.51135 3.53379 3.72544 3.80679 3.99547 4.03238 4.04988 4.17507 4.24389 4.47111 4.59128 4.68487 4.72078 4.80064 4.89105 4.97463 5.08266 5.10273 5.14225 5.28130 5.30076 5.54137 5.56030 5.71464 5.76419 6.01476 6.02605 6.10164 6.24753 6.96805 7.04892 7.31496 7.78089 8.75799 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.002405 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.627324 B =11638.807010 C =12160.775990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.216 4.216 3 C 0.170 3.830 4 N -0.553 5.553 5 C 0.505 3.495 6 N -0.634 5.634 7 C 0.505 3.495 8 O -0.506 6.506 9 C -0.068 4.068 10 C -0.149 4.149 11 C -0.057 4.057 12 C -0.245 4.245 13 C 0.114 3.886 14 O -0.233 6.233 15 C -0.415 4.415 16 H 0.100 0.900 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.020 2.980 20 H -0.255 1.255 21 H -0.270 1.270 22 H -0.259 1.259 23 C -0.207 4.207 24 C -0.055 4.055 25 N -0.545 5.545 26 C 0.151 3.849 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.210 0.790 31 H 0.438 0.562 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.117 0.883 36 H 0.273 0.727 37 H 0.112 0.888 38 H 0.147 0.853 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.921 25.624 -1.391 30.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.222 4.222 3 C 0.004 3.996 4 N -0.273 5.273 5 C 0.150 3.850 6 N -0.286 5.286 7 C 0.292 3.708 8 O -0.375 6.375 9 C -0.107 4.107 10 C -0.150 4.150 11 C -0.075 4.075 12 C -0.264 4.264 13 C 0.064 3.936 14 O -0.140 6.140 15 C -0.491 4.491 16 H 0.117 0.883 17 C -0.222 4.222 18 N -0.559 5.559 19 Si 0.839 3.161 20 H -0.179 1.179 21 H -0.194 1.194 22 H -0.184 1.184 23 C -0.227 4.227 24 C -0.072 4.072 25 N -0.265 5.265 26 C -0.015 4.015 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.227 0.773 31 H 0.278 0.722 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.135 0.865 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.165 0.835 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -16.080 24.450 -1.143 29.286 hybrid contribution -0.292 -0.727 -0.461 0.909 sum -16.372 23.723 -1.604 28.869 Atomic orbital electron populations 1.20654 0.86340 1.04615 1.03688 1.21918 1.00922 0.94392 1.04976 1.23631 0.87328 1.00040 0.88617 1.67884 1.12133 1.27530 1.19729 1.19787 0.87474 0.85426 0.92324 1.43309 1.01536 1.11864 1.71905 1.21715 0.91490 0.82362 0.75218 1.90866 1.70428 1.32061 1.44131 1.20526 0.87281 0.94413 1.08503 1.19183 1.06485 0.96833 0.92520 1.20936 0.95266 0.92739 0.98573 1.21223 1.10336 0.97632 0.97212 1.19955 0.93363 0.84928 0.95395 1.83936 1.73867 1.22635 1.33537 1.21786 1.42328 1.01383 0.83619 0.88252 1.26627 0.95881 0.95769 1.03879 1.70182 1.42604 1.13250 1.29898 0.84637 0.79284 0.77578 0.74622 1.17943 1.19441 1.18387 1.20437 1.10239 0.96731 0.95258 1.20880 0.95410 0.92247 0.98707 1.68458 1.11589 1.28839 1.17597 1.23568 0.88080 1.00174 0.89640 0.89820 0.90560 0.89071 0.77311 0.72153 0.84258 0.84509 0.84349 0.86481 0.91811 0.87019 0.83517 0.80369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.06 71.23 0.72 0.16 16 2 C -0.22 -3.02 5.91 -19.69 -0.12 -3.14 16 3 C 0.17 2.36 11.00 84.71 0.93 3.30 16 4 N -0.55 -11.12 10.46 -197.67 -2.07 -13.18 16 5 C 0.51 12.79 8.38 261.29 2.19 14.98 16 6 N -0.63 -13.30 5.40 -313.65 -1.69 -14.99 16 7 C 0.51 13.24 7.78 87.66 0.68 13.93 16 8 O -0.51 -19.20 14.23 -3.00 -0.04 -19.24 16 9 C -0.07 -1.34 5.83 29.10 0.17 -1.17 16 10 C -0.15 -4.76 4.38 -19.84 -0.09 -4.85 16 11 C -0.06 -2.09 9.69 22.25 0.22 -1.87 16 12 C -0.24 -11.37 9.17 22.39 0.21 -11.17 16 13 C 0.11 6.03 6.65 22.58 0.15 6.18 16 14 O -0.23 -14.73 9.76 -22.72 -0.22 -14.95 16 15 C -0.42 -25.21 9.49 67.92 0.64 -24.56 16 16 H 0.10 5.56 5.20 -2.91 -0.02 5.54 16 17 C -0.02 -1.43 5.49 84.84 0.47 -0.96 16 18 N -0.92 -58.23 13.67 21.62 0.30 -57.94 16 19 Si 1.02 44.26 29.55 68.60 2.03 46.29 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 23 C -0.21 -9.45 9.99 22.39 0.22 -9.23 16 24 C -0.05 -1.94 9.69 22.25 0.22 -1.72 16 25 N -0.54 -16.03 7.87 -197.67 -1.56 -17.59 16 26 C 0.15 3.22 11.00 84.72 0.93 4.15 16 27 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.08 0.41 8.10 -2.39 -0.02 0.39 16 29 H 0.09 0.19 8.10 -2.38 -0.02 0.17 16 30 H 0.21 1.02 8.06 -2.91 -0.02 1.00 16 31 H 0.44 5.49 8.81 -92.71 -0.82 4.67 16 32 H 0.14 1.74 8.09 -2.39 -0.02 1.72 16 33 H 0.14 1.77 8.08 -2.39 -0.02 1.75 16 34 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 35 H 0.12 5.52 5.64 -2.91 -0.02 5.50 16 36 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 37 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 38 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 39 H 0.18 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -89.97 345.55 4.57 -85.40 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.29 Total: 22.19 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 7.54 Total: -15.98 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -5.02 Total: -103.70 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.26 Total: -34.20 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -89.97 4.57 -85.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772291718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.666 kcal (2) G-P(sol) polarization free energy of solvation -89.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds