Wall clock time and date at job start Tue Mar 31 2020 10:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00080 * 2 1 4 4 H 1.48499 * 109.47227 * 270.00390 * 3 2 1 5 5 H 1.48500 * 109.47002 * 30.00340 * 3 2 1 6 6 H 1.48496 * 109.47306 * 150.00347 * 3 2 1 7 7 C 1.37879 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99876 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99976 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46975 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00151 * 180.02562 * 10 9 7 12 12 O 1.21358 * 119.99504 * 359.97438 * 11 10 9 13 13 C 1.49347 * 120.00062 * 179.97438 * 11 10 9 14 14 O 1.21371 * 120.00227 * 0.02562 * 13 11 10 15 15 N 1.34776 * 120.00042 * 179.97438 * 13 11 10 16 16 C 1.39720 * 120.00370 * 184.62883 * 15 13 11 17 17 C 1.39000 * 120.03986 * 324.62954 * 16 15 13 18 18 C 1.38112 * 120.05486 * 180.30082 * 17 16 15 19 19 C 1.38202 * 120.14223 * 359.95749 * 18 17 16 20 20 C 1.38869 * 120.08654 * 0.04516 * 19 18 17 21 21 N 1.40206 * 120.02565 * 180.02562 * 20 19 18 22 22 C 1.36573 * 125.66273 * 179.67529 * 21 20 19 23 23 C 1.34848 * 108.19565 * 179.83037 * 22 21 20 24 24 C 1.40939 * 107.46791 * 0.42044 * 23 22 21 25 25 C 1.34849 * 107.47190 * 359.73901 * 24 23 22 26 26 C 1.38706 * 119.94153 * 359.97438 * 20 19 18 27 27 H 0.97006 * 120.00217 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46755 * 60.00272 * 9 7 2 29 29 H 1.09003 * 109.47304 * 299.99973 * 9 7 2 30 30 H 0.97000 * 119.99895 * 359.97438 * 10 9 7 31 31 H 0.97007 * 119.99611 * 4.62769 * 15 13 11 32 32 H 1.07995 * 119.97234 * 0.26004 * 17 16 15 33 33 H 1.07999 * 119.93313 * 179.97438 * 18 17 16 34 34 H 1.07998 * 119.96041 * 180.02562 * 19 18 17 35 35 H 1.07999 * 125.90349 * 359.97438 * 22 21 20 36 36 H 1.08000 * 126.26356 * 180.15735 * 23 22 21 37 37 H 1.08007 * 126.26301 * 179.75926 * 24 23 22 38 38 H 1.07999 * 125.90027 * 180.02562 * 25 24 23 39 39 H 1.08000 * 120.06620 * 180.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0022 11 6 5.3249 -2.8216 -0.0024 12 8 6.1135 -1.8991 -0.0021 13 6 5.8227 -4.2297 -0.0029 14 8 5.0341 -5.1522 -0.0037 15 7 7.1478 -4.4760 -0.0036 16 6 7.6143 -5.7893 -0.1018 17 6 6.9118 -6.8244 0.5043 18 6 7.3760 -8.1219 0.4128 19 6 8.5389 -8.3956 -0.2820 20 6 9.2454 -7.3660 -0.8898 21 7 10.4248 -7.6451 -1.5947 22 6 11.2037 -6.7267 -2.2388 23 6 12.2479 -7.3751 -2.7935 24 6 12.1053 -8.7440 -2.4901 25 6 10.9823 -8.8813 -1.7563 26 6 8.7827 -6.0615 -0.7997 27 1 -0.4851 0.8401 0.0004 28 1 3.8751 -0.6804 0.8889 29 1 3.8746 -0.6800 -0.8911 30 1 3.3695 -3.3125 -0.0021 31 1 7.7777 -3.7413 0.0640 32 1 6.0027 -6.6137 1.0479 33 1 6.8289 -8.9246 0.8848 34 1 8.8990 -9.4113 -0.3521 35 1 11.0171 -5.6643 -2.2924 36 1 13.0450 -6.9278 -3.3688 37 1 12.7734 -9.5379 -2.7902 38 1 10.5916 -9.8085 -1.3638 39 1 9.3303 -5.2593 -1.2719 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787593826.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:23 Heat of formation + Delta-G solvation = 21.675988 kcal Electronic energy + Delta-G solvation = -23894.322248 eV Core-core repulsion = 20189.425082 eV Total energy + Delta-G solvation = -3704.897165 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94581 -40.93415 -39.20818 -38.03365 -35.54093 -34.45089 -33.20460 -32.46733 -30.73323 -29.11756 -28.98246 -28.36207 -25.15868 -23.61055 -22.93204 -21.82858 -20.65101 -20.29943 -19.94084 -18.98940 -18.65048 -16.96538 -16.65979 -16.46054 -15.90994 -15.78800 -15.29962 -15.26655 -14.96119 -14.46813 -14.28005 -14.13349 -13.92835 -13.60476 -13.29307 -12.98103 -12.67458 -12.55114 -12.50241 -12.33775 -12.23496 -11.80230 -11.41042 -11.12634 -10.88624 -10.82970 -10.08493 -10.01693 -9.62007 -9.40348 -8.91762 -8.79465 -8.56675 -8.48392 -8.22106 -6.29796 -4.34160 0.60654 0.76726 1.58730 2.16267 2.29190 2.60707 2.69482 3.19349 3.26937 3.30308 3.32446 3.50871 3.81516 4.23999 4.33998 4.50438 4.65773 4.74120 4.78166 4.87436 4.96207 5.04273 5.07962 5.19631 5.26763 5.43235 5.64138 5.86680 5.89693 5.92020 6.02368 6.10831 6.48158 6.52841 6.59394 6.75585 6.85001 6.87661 6.92218 7.11139 7.18439 7.55672 7.90593 8.27721 8.37416 8.69670 9.27220 10.81828 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.029860 B = 0.002295 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.484465 B =12196.906350 C =12887.359455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.550 4.550 8 H 0.083 0.917 9 C 0.217 3.783 10 N -0.662 5.662 11 C 0.494 3.506 12 O -0.537 6.537 13 C 0.512 3.488 14 O -0.497 6.497 15 N -0.651 5.651 16 C 0.178 3.822 17 C -0.132 4.132 18 C -0.071 4.071 19 C -0.155 4.155 20 C 0.156 3.844 21 N -0.395 5.395 22 C -0.014 4.014 23 C -0.192 4.192 24 C -0.192 4.192 25 C -0.014 4.014 26 C -0.165 4.165 27 H 0.269 0.731 28 H 0.034 0.966 29 H 0.029 0.971 30 H 0.411 0.589 31 H 0.425 0.575 32 H 0.148 0.852 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.165 0.835 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.165 0.835 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.652 -16.992 -1.206 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.588 4.588 8 H 0.101 0.899 9 C 0.096 3.904 10 N -0.311 5.311 11 C 0.273 3.727 12 O -0.416 6.416 13 C 0.295 3.705 14 O -0.369 6.369 15 N -0.299 5.299 16 C 0.083 3.917 17 C -0.152 4.152 18 C -0.090 4.090 19 C -0.175 4.175 20 C 0.063 3.937 21 N -0.067 5.067 22 C -0.141 4.141 23 C -0.216 4.216 24 C -0.216 4.216 25 C -0.141 4.141 26 C -0.187 4.187 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.247 0.753 31 H 0.263 0.737 32 H 0.165 0.835 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.182 0.818 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.182 0.818 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 21.125 -16.713 -1.072 26.958 hybrid contribution 0.383 0.922 -0.103 1.003 sum 21.507 -15.792 -1.176 26.708 Atomic orbital electron populations 1.69871 1.06204 1.27588 1.48687 1.24783 0.94829 0.99140 0.93734 0.86821 0.80519 0.83228 0.79129 1.19720 1.20724 1.18508 1.21035 0.88046 0.95572 1.54104 0.89884 1.19741 0.95885 0.77247 0.97505 1.46133 1.04831 1.12421 1.67738 1.19644 0.84735 0.87811 0.80544 1.90737 1.55323 1.44997 1.50515 1.20805 0.82288 0.91058 0.76385 1.90754 1.55011 1.45724 1.45441 1.43190 1.07946 1.07356 1.71361 1.17427 0.93839 0.84546 0.95913 1.21442 1.01667 0.91850 1.00270 1.20923 0.94540 0.96574 0.96943 1.20813 0.96907 0.98252 1.01572 1.17505 0.86658 0.93821 0.95685 1.41637 1.17794 1.07809 1.39434 1.21952 0.94314 0.95605 1.02243 1.21007 1.00268 0.94118 1.06181 1.21003 0.99050 0.96999 1.04567 1.21903 0.97536 0.88182 1.06485 1.20456 0.99074 0.95501 1.03664 0.92072 0.94804 0.95293 0.75323 0.73689 0.83451 0.84470 0.85127 0.81782 0.84174 0.84194 0.81772 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.96 55.43 0.77 -24.99 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 20.53 27.47 -169.99 -4.67 15.86 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.55 -14.66 9.83 -34.44 -0.34 -15.00 16 8 H 0.08 2.34 7.84 -52.49 -0.41 1.92 16 9 C 0.22 5.08 4.50 -5.19 -0.02 5.05 16 10 N -0.66 -13.18 5.54 -61.94 -0.34 -13.53 16 11 C 0.49 8.93 7.89 -11.63 -0.09 8.84 16 12 O -0.54 -10.60 16.48 5.49 0.09 -10.51 16 13 C 0.51 7.79 7.73 -11.63 -0.09 7.70 16 14 O -0.50 -8.18 13.92 5.48 0.08 -8.10 16 15 N -0.65 -7.94 5.32 -10.32 -0.05 -7.99 16 16 C 0.18 2.04 6.29 -83.78 -0.53 1.51 16 17 C -0.13 -1.49 8.70 -39.34 -0.34 -1.83 16 18 C -0.07 -0.63 10.03 -39.64 -0.40 -1.03 16 19 C -0.16 -1.36 9.45 -39.36 -0.37 -1.73 16 20 C 0.16 1.56 6.62 -83.62 -0.55 1.01 16 21 N -0.40 -3.88 2.97 -60.95 -0.18 -4.06 16 22 C -0.01 -0.13 10.74 -16.64 -0.18 -0.31 16 23 C -0.19 -1.70 10.86 -39.76 -0.43 -2.13 16 24 C -0.19 -1.65 10.86 -39.76 -0.43 -2.08 16 25 C -0.01 -0.13 10.74 -16.65 -0.18 -0.30 16 26 C -0.16 -1.67 9.37 -39.20 -0.37 -2.04 16 27 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.03 0.81 7.20 -51.93 -0.37 0.44 16 29 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 30 H 0.41 7.76 7.79 -40.82 -0.32 7.44 16 31 H 0.42 4.47 8.30 -40.82 -0.34 4.13 16 32 H 0.15 1.82 6.23 -52.49 -0.33 1.49 16 33 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.13 0.85 6.70 -52.49 -0.35 0.50 16 35 H 0.16 1.19 7.01 -52.49 -0.37 0.82 16 36 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 38 H 0.16 1.00 7.00 -52.49 -0.37 0.63 16 39 H 0.14 1.15 6.70 -52.49 -0.35 0.79 16 LS Contribution 340.28 15.07 5.13 5.13 Total: -1.00 -31.43 340.28 -7.64 -39.07 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -4.04 Total: 9.38 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -4.42 Total: -0.26 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.19 Total: -50.56 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.17 Total: -18.61 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.43 -7.64 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787593826.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.747 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds