Wall clock time and date at job start Tue Mar 31 2020 10:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00080 * 2 1 4 4 H 1.48499 * 109.47227 * 270.00390 * 3 2 1 5 5 H 1.48500 * 109.47002 * 30.00340 * 3 2 1 6 6 H 1.48496 * 109.47306 * 150.00347 * 3 2 1 7 7 C 1.37879 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99876 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99976 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46975 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00151 * 180.02562 * 10 9 7 12 12 O 1.21358 * 119.99504 * 359.97438 * 11 10 9 13 13 C 1.49347 * 120.00062 * 179.97438 * 11 10 9 14 14 O 1.21371 * 120.00227 * 0.02562 * 13 11 10 15 15 N 1.34776 * 120.00042 * 179.97438 * 13 11 10 16 16 C 1.39720 * 120.00370 * 184.62883 * 15 13 11 17 17 C 1.39000 * 120.03986 * 324.62954 * 16 15 13 18 18 C 1.38112 * 120.05486 * 180.30082 * 17 16 15 19 19 C 1.38202 * 120.14223 * 359.95749 * 18 17 16 20 20 C 1.38869 * 120.08654 * 0.04516 * 19 18 17 21 21 N 1.40206 * 120.02565 * 180.02562 * 20 19 18 22 22 C 1.36573 * 125.66273 * 179.67529 * 21 20 19 23 23 C 1.34848 * 108.19565 * 179.83037 * 22 21 20 24 24 C 1.40939 * 107.46791 * 0.42044 * 23 22 21 25 25 C 1.34849 * 107.47190 * 359.73901 * 24 23 22 26 26 C 1.38706 * 119.94153 * 359.97438 * 20 19 18 27 27 H 0.97006 * 120.00217 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46755 * 60.00272 * 9 7 2 29 29 H 1.09003 * 109.47304 * 299.99973 * 9 7 2 30 30 H 0.97000 * 119.99895 * 359.97438 * 10 9 7 31 31 H 0.97007 * 119.99611 * 4.62769 * 15 13 11 32 32 H 1.07995 * 119.97234 * 0.26004 * 17 16 15 33 33 H 1.07999 * 119.93313 * 179.97438 * 18 17 16 34 34 H 1.07998 * 119.96041 * 180.02562 * 19 18 17 35 35 H 1.07999 * 125.90349 * 359.97438 * 22 21 20 36 36 H 1.08000 * 126.26356 * 180.15735 * 23 22 21 37 37 H 1.08007 * 126.26301 * 179.75926 * 24 23 22 38 38 H 1.07999 * 125.90027 * 180.02562 * 25 24 23 39 39 H 1.08000 * 120.06620 * 180.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0022 11 6 5.3249 -2.8216 -0.0024 12 8 6.1135 -1.8991 -0.0021 13 6 5.8227 -4.2297 -0.0029 14 8 5.0341 -5.1522 -0.0037 15 7 7.1478 -4.4760 -0.0036 16 6 7.6143 -5.7893 -0.1018 17 6 6.9118 -6.8244 0.5043 18 6 7.3760 -8.1219 0.4128 19 6 8.5389 -8.3956 -0.2820 20 6 9.2454 -7.3660 -0.8898 21 7 10.4248 -7.6451 -1.5947 22 6 11.2037 -6.7267 -2.2388 23 6 12.2479 -7.3751 -2.7935 24 6 12.1053 -8.7440 -2.4901 25 6 10.9823 -8.8813 -1.7563 26 6 8.7827 -6.0615 -0.7997 27 1 -0.4851 0.8401 0.0004 28 1 3.8751 -0.6804 0.8889 29 1 3.8746 -0.6800 -0.8911 30 1 3.3695 -3.3125 -0.0021 31 1 7.7777 -3.7413 0.0640 32 1 6.0027 -6.6137 1.0479 33 1 6.8289 -8.9246 0.8848 34 1 8.8990 -9.4113 -0.3521 35 1 11.0171 -5.6643 -2.2924 36 1 13.0450 -6.9278 -3.3688 37 1 12.7734 -9.5379 -2.7902 38 1 10.5916 -9.8085 -1.3638 39 1 9.3303 -5.2593 -1.2719 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787593826.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:22 Heat of formation + Delta-G solvation = 1.405173 kcal Electronic energy + Delta-G solvation = -23895.201256 eV Core-core repulsion = 20189.425082 eV Total energy + Delta-G solvation = -3705.776174 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.64508 -42.07374 -40.36351 -39.19191 -36.79500 -35.94595 -34.44921 -33.92447 -31.56212 -30.39035 -29.77942 -29.56001 -26.51614 -24.46970 -24.11141 -23.16196 -21.82750 -21.07369 -20.86593 -20.13396 -19.61976 -18.67557 -17.87452 -17.41796 -17.07469 -16.97859 -16.82297 -16.16983 -16.02326 -15.84025 -15.35660 -15.12866 -14.96377 -14.64764 -14.44658 -14.36626 -14.11313 -13.76328 -13.41654 -13.20488 -13.13794 -12.96639 -12.71315 -12.56315 -12.50689 -11.92911 -11.74200 -11.70935 -10.94317 -10.85900 -10.69238 -10.21522 -9.61920 -9.20606 -8.96710 -8.40629 -6.50244 -0.23518 -0.06095 0.42478 1.12535 1.35891 1.37933 1.48086 1.49161 1.85363 2.00855 2.06239 2.27889 2.56539 2.69639 2.94312 3.32803 3.66124 3.83271 3.98843 4.03721 4.20457 4.24782 4.33989 4.55367 4.59600 4.63484 4.77285 4.94131 4.95622 5.01529 5.10845 5.13452 5.22258 5.30519 5.34950 5.37381 5.65345 5.80110 5.97186 6.02564 6.22952 6.38290 6.45442 6.50142 6.62926 6.85455 7.16159 8.74156 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.029860 B = 0.002295 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.484465 B =12196.906350 C =12887.359455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.025 3.975 3 Si 0.943 3.057 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.251 1.251 7 C -0.555 4.555 8 H 0.055 0.945 9 C 0.229 3.771 10 N -0.670 5.670 11 C 0.499 3.501 12 O -0.550 6.550 13 C 0.521 3.479 14 O -0.512 6.512 15 N -0.634 5.634 16 C 0.157 3.843 17 C -0.147 4.147 18 C -0.066 4.066 19 C -0.148 4.148 20 C 0.147 3.853 21 N -0.403 5.403 22 C -0.034 4.034 23 C -0.202 4.202 24 C -0.204 4.204 25 C -0.024 4.024 26 C -0.163 4.163 27 H 0.273 0.727 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.414 0.586 31 H 0.432 0.568 32 H 0.133 0.867 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.177 0.823 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.189 0.811 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.994 -17.901 -1.394 29.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.175 1.175 7 C -0.593 4.593 8 H 0.073 0.927 9 C 0.106 3.894 10 N -0.320 5.320 11 C 0.279 3.721 12 O -0.430 6.430 13 C 0.303 3.697 14 O -0.386 6.386 15 N -0.281 5.281 16 C 0.062 3.938 17 C -0.168 4.168 18 C -0.085 4.085 19 C -0.167 4.167 20 C 0.054 3.946 21 N -0.076 5.076 22 C -0.160 4.160 23 C -0.226 4.226 24 C -0.228 4.228 25 C -0.150 4.150 26 C -0.185 4.185 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.251 0.749 31 H 0.272 0.728 32 H 0.151 0.849 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.194 0.806 36 H 0.171 0.829 37 H 0.175 0.825 38 H 0.206 0.794 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 23.525 -17.655 -1.265 29.440 hybrid contribution -0.253 1.039 -0.066 1.071 sum 23.272 -16.616 -1.331 28.626 Atomic orbital electron populations 1.69992 1.07942 1.28808 1.50160 1.25673 0.95614 1.02978 0.93313 0.85783 0.79445 0.78619 0.79622 1.18802 1.20051 1.17472 1.21248 0.89895 0.94667 1.53492 0.92699 1.19392 0.93624 0.79161 0.97220 1.45958 1.05900 1.11241 1.68895 1.20020 0.83765 0.89123 0.79149 1.90721 1.55507 1.46026 1.50749 1.20093 0.83286 0.89228 0.77062 1.90761 1.55659 1.45463 1.46718 1.42988 1.06742 1.08351 1.70060 1.17529 0.94821 0.83866 0.97535 1.21483 1.01491 0.93006 1.00813 1.21196 0.94620 0.96234 0.96480 1.21147 0.96208 0.99272 1.00117 1.17703 0.87004 0.94050 0.95862 1.41760 1.17806 1.08329 1.39669 1.22316 0.94651 0.96443 1.02622 1.21337 1.00558 0.94573 1.06147 1.21348 0.99476 0.97402 1.04539 1.22410 0.97568 0.88674 1.06333 1.20546 0.98486 0.96281 1.03208 0.91740 0.95067 0.95313 0.74924 0.72785 0.84908 0.81908 0.82510 0.80573 0.82869 0.82502 0.79396 0.83450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.03 13.96 21.45 0.30 -54.73 16 2 C 0.02 1.37 5.47 84.66 0.46 1.83 16 3 Si 0.94 42.06 27.47 68.60 1.88 43.95 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 7 C -0.56 -30.16 9.83 25.60 0.25 -29.91 16 8 H 0.05 3.21 7.84 -2.91 -0.02 3.19 16 9 C 0.23 10.64 4.50 85.63 0.38 11.03 16 10 N -0.67 -26.82 5.54 -468.23 -2.59 -29.42 16 11 C 0.50 17.86 7.89 87.24 0.69 18.55 16 12 O -0.55 -21.27 16.48 -3.27 -0.05 -21.32 16 13 C 0.52 15.66 7.73 87.24 0.67 16.33 16 14 O -0.51 -16.81 13.92 -3.31 -0.05 -16.86 16 15 N -0.63 -14.93 5.32 -304.90 -1.62 -16.55 16 16 C 0.16 3.43 6.29 38.20 0.24 3.67 16 17 C -0.15 -3.17 8.70 22.42 0.20 -2.98 16 18 C -0.07 -1.04 10.03 22.23 0.22 -0.82 16 19 C -0.15 -2.17 9.45 22.41 0.21 -1.96 16 20 C 0.15 2.63 6.62 38.06 0.25 2.88 16 21 N -0.40 -7.08 2.97 -346.74 -1.03 -8.11 16 22 C -0.03 -0.58 10.74 83.18 0.89 0.31 16 23 C -0.20 -3.26 10.86 22.15 0.24 -3.02 16 24 C -0.20 -3.08 10.86 22.15 0.24 -2.84 16 25 C -0.02 -0.36 10.74 83.18 0.89 0.53 16 26 C -0.16 -3.06 9.37 22.51 0.21 -2.85 16 27 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 28 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 29 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 30 H 0.41 15.99 7.79 -92.71 -0.72 15.27 16 31 H 0.43 8.65 8.30 -92.70 -0.77 7.88 16 32 H 0.13 3.25 6.23 -2.91 -0.02 3.23 16 33 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 34 H 0.16 1.44 6.70 -2.91 -0.02 1.42 16 35 H 0.18 2.31 7.01 -2.91 -0.02 2.29 16 36 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.19 1.66 7.00 -2.91 -0.02 1.64 16 39 H 0.15 2.27 6.70 -2.91 -0.02 2.25 16 Total: -1.00 -67.31 340.28 2.47 -64.84 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -0.42 Total: 27.45 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 6.06 Total: 10.75 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -4.95 Total: -108.81 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.10 Total: -38.18 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.88 Total: 43.95 kcal Total: -67.31 2.47 -64.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787593826.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.241 kcal (2) G-P(sol) polarization free energy of solvation -67.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds