Wall clock time and date at job start Tue Mar 31 2020 10:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 119.99750 * 2 1 4 4 H 1.48501 * 109.47069 * 271.15781 * 3 2 1 5 5 H 1.48492 * 109.47297 * 31.16115 * 3 2 1 6 6 H 1.48502 * 109.46921 * 151.16416 * 3 2 1 7 7 C 1.37881 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99920 * 5.63245 * 7 2 1 9 9 C 1.50701 * 119.99599 * 185.62998 * 7 2 1 10 10 O 1.45197 * 112.84658 * 63.83806 * 9 7 2 11 11 C 1.34669 * 117.00223 * 65.25584 * 10 9 7 12 12 O 1.21426 * 119.99893 * 4.86743 * 11 10 9 13 13 C 1.48063 * 120.00327 * 184.87244 * 11 10 9 14 14 C 1.39987 * 120.89206 * 357.20907 * 13 11 10 15 15 C 1.38046 * 119.12520 * 180.02562 * 14 13 11 16 16 N 1.31850 * 120.98962 * 0.02562 * 15 14 13 17 17 C 1.32220 * 121.98206 * 359.97438 * 16 15 14 18 18 N 1.39845 * 119.62079 * 179.97438 * 17 16 15 19 19 C 1.37179 * 126.48662 * 5.02070 * 18 17 16 20 20 C 1.34616 * 106.82871 * 179.97438 * 19 18 17 21 21 N 1.34157 * 108.21665 * 359.74393 * 20 19 18 22 22 C 1.30475 * 109.37028 * 0.43407 * 21 20 19 23 23 C 1.38907 * 120.75615 * 0.26340 * 17 16 15 24 24 C 1.53775 * 113.61465 * 195.03554 * 9 7 2 25 25 C 1.53956 * 87.02056 * 89.22985 * 24 9 7 26 26 C 1.53780 * 87.11106 * 25.36299 * 25 24 9 27 27 H 0.96995 * 119.99815 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.43686 * 0.02885 * 14 13 11 29 29 H 1.08005 * 119.50297 * 179.97438 * 15 14 13 30 30 H 1.07996 * 126.58360 * 0.02562 * 19 18 17 31 31 H 1.07999 * 125.89185 * 180.02562 * 20 19 18 32 32 H 1.08001 * 125.72359 * 179.83336 * 22 21 20 33 33 H 1.07998 * 120.53144 * 179.71829 * 23 17 16 34 34 H 1.08996 * 113.61713 * 203.74816 * 24 9 7 35 35 H 1.09003 * 113.61557 * 334.65222 * 24 9 7 36 36 H 1.08998 * 113.53310 * 270.81252 * 25 24 9 37 37 H 1.08998 * 113.74421 * 139.94422 * 25 24 9 38 38 H 1.08997 * 113.61396 * 220.09108 * 26 25 24 39 39 H 1.08999 * 113.68968 * 89.19545 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4721 2.0606 -1.3998 5 1 1.4591 2.6454 0.7244 6 1 3.5588 1.4332 0.6753 7 6 2.0046 -1.1941 -0.0005 8 1 1.4685 -2.1271 -0.0927 9 6 3.5062 -1.1973 0.1275 10 8 3.9646 -0.6687 1.3998 11 6 3.6427 -1.3685 2.5043 12 8 3.0741 -2.4366 2.4021 13 6 3.9819 -0.8357 3.8435 14 6 4.6881 0.3651 3.9815 15 6 4.9855 0.8280 5.2475 16 7 4.6150 0.1567 6.3202 17 6 3.9468 -0.9812 6.2381 18 7 3.5789 -1.6528 7.4083 19 6 3.7554 -1.2079 8.6939 20 6 3.2608 -2.1599 9.5071 21 7 2.7886 -3.1582 8.7454 22 6 2.9782 -2.8695 7.4872 23 6 3.6111 -1.5204 5.0027 24 6 4.1539 -2.5396 -0.2512 25 6 4.2268 -2.0057 -1.6935 26 6 4.2293 -0.5924 -1.0875 27 1 -0.4849 0.8400 0.0004 28 1 4.9962 0.9219 3.1090 29 1 5.5305 1.7535 5.3611 30 1 4.2043 -0.2731 8.9956 31 1 3.2427 -2.1239 10.5863 32 1 2.7002 -3.4909 6.6488 33 1 3.0692 -2.4524 4.9398 34 1 5.1307 -2.6974 0.2058 35 1 3.4876 -3.3943 -0.1342 36 1 3.3378 -2.2258 -2.2845 37 1 5.1522 -2.2611 -2.2097 38 1 3.6239 0.1226 -1.6445 39 1 5.2262 -0.2156 -0.8591 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788144639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:49 Heat of formation + Delta-G solvation = 59.774620 kcal Electronic energy + Delta-G solvation = -25490.385620 eV Core-core repulsion = 21787.140536 eV Total energy + Delta-G solvation = -3703.245084 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.48305 -40.48856 -39.49214 -37.45596 -34.79460 -34.37492 -32.87151 -32.50808 -30.34771 -29.41174 -26.93950 -25.32862 -25.08056 -24.32407 -23.00828 -21.87511 -21.08611 -20.42100 -18.87870 -18.68004 -17.44863 -16.72884 -16.19239 -15.92022 -15.82745 -15.46384 -15.42918 -14.75666 -14.61820 -14.13201 -14.02330 -13.90290 -13.75399 -13.64828 -13.23494 -12.94289 -12.20458 -11.88282 -11.69560 -11.31464 -11.14226 -10.95979 -10.83871 -10.36690 -10.32007 -10.21774 -10.18490 -10.05517 -9.93690 -9.75765 -9.19763 -8.99287 -8.96026 -8.72989 -8.63024 -6.36453 -4.45312 0.39523 0.59961 1.99211 2.21658 2.93788 3.00614 3.12150 3.19705 3.30867 3.37656 3.77017 4.03830 4.22642 4.40088 4.50166 4.63474 4.75356 4.82243 4.96502 5.21139 5.25693 5.33038 5.37403 5.38649 5.48833 5.59243 5.69407 5.86360 5.95235 6.07405 6.16193 6.25286 6.26842 6.50984 6.52888 6.71525 6.83004 6.92783 7.07853 7.26664 7.46536 7.52732 7.81690 8.18266 8.58147 8.74348 9.23942 10.73324 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018760 B = 0.003840 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.192654 B = 7289.971704 C = 7463.051544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.085 3.915 3 Si 0.864 3.136 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.235 1.235 7 C -0.512 4.512 8 H 0.087 0.913 9 C 0.198 3.802 10 O -0.358 6.358 11 C 0.503 3.497 12 O -0.478 6.478 13 C -0.033 4.033 14 C -0.132 4.132 15 C 0.124 3.876 16 N -0.486 5.486 17 C 0.334 3.666 18 N -0.408 5.408 19 C -0.027 4.027 20 C -0.033 4.033 21 N -0.480 5.480 22 C 0.197 3.803 23 C -0.124 4.124 24 C -0.144 4.144 25 C -0.125 4.125 26 C -0.131 4.131 27 H 0.269 0.731 28 H 0.159 0.841 29 H 0.174 0.826 30 H 0.181 0.819 31 H 0.175 0.825 32 H 0.214 0.786 33 H 0.157 0.843 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.434 1.797 9.427 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.122 4.122 3 Si 0.690 3.310 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.158 1.158 7 C -0.548 4.548 8 H 0.105 0.895 9 C 0.165 3.835 10 O -0.276 6.276 11 C 0.344 3.656 12 O -0.365 6.365 13 C -0.042 4.042 14 C -0.152 4.152 15 C -0.034 4.034 16 N -0.199 5.199 17 C 0.106 3.894 18 N -0.090 5.090 19 C -0.157 4.157 20 C -0.178 4.178 21 N -0.197 5.197 22 C -0.084 4.084 23 C -0.146 4.146 24 C -0.182 4.182 25 C -0.162 4.162 26 C -0.169 4.169 27 H 0.079 0.921 28 H 0.177 0.823 29 H 0.191 0.809 30 H 0.198 0.802 31 H 0.193 0.807 32 H 0.230 0.770 33 H 0.175 0.825 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.957 1.202 10.404 15.157 hybrid contribution 0.297 1.422 -1.132 1.842 sum 11.254 2.624 9.272 14.815 Atomic orbital electron populations 1.69922 1.06549 1.27736 1.46660 1.25060 0.94715 0.99571 0.92803 0.87069 0.82119 0.82923 0.78875 1.20168 1.21672 1.15783 1.20822 0.87132 0.95343 1.51534 0.89532 1.21803 0.94743 0.90857 0.76092 1.86648 1.70919 1.53540 1.16445 1.20361 0.77225 0.83301 0.84670 1.90782 1.36499 1.21676 1.87519 1.19898 0.96983 0.94876 0.92470 1.22643 0.96956 0.95480 1.00131 1.22588 0.96120 0.98409 0.86235 1.66806 1.11536 1.06246 1.35276 1.17913 0.96135 0.91031 0.84288 1.43105 1.44828 1.16375 1.04712 1.22903 1.07846 1.02824 0.82103 1.22391 1.03813 0.91612 0.99981 1.70350 1.20868 1.27689 1.00774 1.25472 0.99836 0.85787 0.97346 1.21652 1.01091 1.02294 0.89540 1.23350 0.99597 0.99202 0.96013 1.22527 1.01213 0.96230 0.96245 1.23272 0.99507 0.97464 0.96644 0.92103 0.82329 0.80858 0.80155 0.80736 0.76955 0.82530 0.91787 0.90946 0.89472 0.92283 0.91116 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.40 13.96 55.43 0.77 -24.63 16 2 C 0.08 2.31 5.47 -17.81 -0.10 2.21 16 3 Si 0.86 19.93 24.62 -169.99 -4.19 15.74 16 4 H -0.28 -6.18 7.09 56.52 0.40 -5.78 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.23 -5.00 5.66 56.52 0.32 -4.68 16 7 C -0.51 -13.64 7.89 -34.44 -0.27 -13.91 16 8 H 0.09 2.58 8.05 -52.49 -0.42 2.16 16 9 C 0.20 4.40 0.24 -90.96 -0.02 4.38 16 10 O -0.36 -7.58 7.34 -40.41 -0.30 -7.88 16 11 C 0.50 10.24 7.47 34.76 0.26 10.50 16 12 O -0.48 -10.89 14.95 -19.21 -0.29 -11.18 16 13 C -0.03 -0.53 5.91 -104.69 -0.62 -1.15 16 14 C -0.13 -1.74 9.70 -39.00 -0.38 -2.12 16 15 C 0.12 1.39 11.17 -17.61 -0.20 1.19 16 16 N -0.49 -6.33 9.87 -12.34 -0.12 -6.45 16 17 C 0.33 4.62 7.50 -154.43 -1.16 3.46 16 18 N -0.41 -5.40 2.98 -63.85 -0.19 -5.59 16 19 C -0.03 -0.32 11.17 -16.44 -0.18 -0.50 16 20 C -0.03 -0.39 11.85 -17.82 -0.21 -0.60 16 21 N -0.48 -6.69 11.24 -14.47 -0.16 -6.85 16 22 C 0.20 2.54 11.89 -89.59 -1.07 1.48 16 23 C -0.12 -1.81 9.07 -38.81 -0.35 -2.17 16 24 C -0.14 -2.82 6.39 -25.83 -0.16 -2.99 16 25 C -0.12 -2.20 7.81 -25.83 -0.20 -2.40 16 26 C -0.13 -2.54 6.16 -25.92 -0.16 -2.70 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.16 1.93 7.71 -52.49 -0.40 1.52 16 29 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 30 H 0.18 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.18 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.21 2.18 7.06 -52.49 -0.37 1.81 16 33 H 0.16 2.16 6.46 -52.49 -0.34 1.82 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 36 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.43 5.83 -51.93 -0.30 1.13 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 332.74 15.07 5.01 5.01 Total: -1.00 -32.35 332.74 -8.71 -41.06 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.44 Total: 6.07 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -4.82 Total: -5.30 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.30 Total: -43.52 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.58 Total: -19.06 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.19 Total: 15.74 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.35 -8.71 -41.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788144639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.836 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds