Wall clock time and date at job start Tue Mar 31 2020 10:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 119.99750 * 2 1 4 4 H 1.48501 * 109.47069 * 271.15781 * 3 2 1 5 5 H 1.48492 * 109.47297 * 31.16115 * 3 2 1 6 6 H 1.48502 * 109.46921 * 151.16416 * 3 2 1 7 7 C 1.37881 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99920 * 5.63245 * 7 2 1 9 9 C 1.50701 * 119.99599 * 185.62998 * 7 2 1 10 10 O 1.45197 * 112.84658 * 63.83806 * 9 7 2 11 11 C 1.34669 * 117.00223 * 65.25584 * 10 9 7 12 12 O 1.21426 * 119.99893 * 4.86743 * 11 10 9 13 13 C 1.48063 * 120.00327 * 184.87244 * 11 10 9 14 14 C 1.39987 * 120.89206 * 357.20907 * 13 11 10 15 15 C 1.38046 * 119.12520 * 180.02562 * 14 13 11 16 16 N 1.31850 * 120.98962 * 0.02562 * 15 14 13 17 17 C 1.32220 * 121.98206 * 359.97438 * 16 15 14 18 18 N 1.39845 * 119.62079 * 179.97438 * 17 16 15 19 19 C 1.37179 * 126.48662 * 5.02070 * 18 17 16 20 20 C 1.34616 * 106.82871 * 179.97438 * 19 18 17 21 21 N 1.34157 * 108.21665 * 359.74393 * 20 19 18 22 22 C 1.30475 * 109.37028 * 0.43407 * 21 20 19 23 23 C 1.38907 * 120.75615 * 0.26340 * 17 16 15 24 24 C 1.53775 * 113.61465 * 195.03554 * 9 7 2 25 25 C 1.53956 * 87.02056 * 89.22985 * 24 9 7 26 26 C 1.53780 * 87.11106 * 25.36299 * 25 24 9 27 27 H 0.96995 * 119.99815 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.43686 * 0.02885 * 14 13 11 29 29 H 1.08005 * 119.50297 * 179.97438 * 15 14 13 30 30 H 1.07996 * 126.58360 * 0.02562 * 19 18 17 31 31 H 1.07999 * 125.89185 * 180.02562 * 20 19 18 32 32 H 1.08001 * 125.72359 * 179.83336 * 22 21 20 33 33 H 1.07998 * 120.53144 * 179.71829 * 23 17 16 34 34 H 1.08996 * 113.61713 * 203.74816 * 24 9 7 35 35 H 1.09003 * 113.61557 * 334.65222 * 24 9 7 36 36 H 1.08998 * 113.53310 * 270.81252 * 25 24 9 37 37 H 1.08998 * 113.74421 * 139.94422 * 25 24 9 38 38 H 1.08997 * 113.61396 * 220.09108 * 26 25 24 39 39 H 1.08999 * 113.68968 * 89.19545 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4721 2.0606 -1.3998 5 1 1.4591 2.6454 0.7244 6 1 3.5588 1.4332 0.6753 7 6 2.0046 -1.1941 -0.0005 8 1 1.4685 -2.1271 -0.0927 9 6 3.5062 -1.1973 0.1275 10 8 3.9646 -0.6687 1.3998 11 6 3.6427 -1.3685 2.5043 12 8 3.0741 -2.4366 2.4021 13 6 3.9819 -0.8357 3.8435 14 6 4.6881 0.3651 3.9815 15 6 4.9855 0.8280 5.2475 16 7 4.6150 0.1567 6.3202 17 6 3.9468 -0.9812 6.2381 18 7 3.5789 -1.6528 7.4083 19 6 3.7554 -1.2079 8.6939 20 6 3.2608 -2.1599 9.5071 21 7 2.7886 -3.1582 8.7454 22 6 2.9782 -2.8695 7.4872 23 6 3.6111 -1.5204 5.0027 24 6 4.1539 -2.5396 -0.2512 25 6 4.2268 -2.0057 -1.6935 26 6 4.2293 -0.5924 -1.0875 27 1 -0.4849 0.8400 0.0004 28 1 4.9962 0.9219 3.1090 29 1 5.5305 1.7535 5.3611 30 1 4.2043 -0.2731 8.9956 31 1 3.2427 -2.1239 10.5863 32 1 2.7002 -3.4909 6.6488 33 1 3.0692 -2.4524 4.9398 34 1 5.1307 -2.6974 0.2058 35 1 3.4876 -3.3943 -0.1342 36 1 3.3378 -2.2258 -2.2845 37 1 5.1522 -2.2611 -2.2097 38 1 3.6239 0.1226 -1.6445 39 1 5.2262 -0.2156 -0.8591 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788144639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:48 Heat of formation + Delta-G solvation = 41.782884 kcal Electronic energy + Delta-G solvation = -25491.165800 eV Core-core repulsion = 21787.140536 eV Total energy + Delta-G solvation = -3704.025265 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.45571 -41.78275 -40.89152 -39.04658 -36.42533 -35.41621 -34.57154 -33.99967 -31.35401 -30.36198 -28.80428 -26.71018 -26.65079 -25.36088 -24.51988 -23.05544 -22.09475 -21.57919 -20.52094 -20.04380 -19.00640 -18.01686 -17.54274 -17.24626 -17.02090 -16.97428 -16.84053 -16.25446 -15.83044 -15.58342 -15.05195 -14.97348 -14.93329 -14.80631 -14.78843 -14.43648 -13.54447 -13.42771 -13.25671 -12.96764 -12.85090 -12.47343 -12.02358 -11.95310 -11.87998 -11.69744 -11.63821 -11.29933 -11.25742 -11.10447 -11.00024 -10.70590 -10.58188 -9.97546 -9.57749 -8.44106 -6.58919 -0.72708 -0.46210 1.00869 1.19739 1.32650 1.32939 1.54456 1.64075 1.87200 2.01253 2.30318 2.59506 2.91744 3.10951 3.35000 3.46628 3.58175 3.72775 3.74836 3.83500 3.93125 4.12027 4.14627 4.24202 4.38101 4.41335 4.50528 4.60557 4.78164 4.83393 4.88702 5.00110 5.04052 5.12785 5.21818 5.22466 5.50301 5.57511 5.62545 5.72123 5.95187 6.21220 6.46979 6.54229 6.86132 6.92891 7.15465 8.70323 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018760 B = 0.003840 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.192654 B = 7289.971704 C = 7463.051544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.925 3.075 4 H -0.260 1.260 5 H -0.296 1.296 6 H -0.201 1.201 7 C -0.516 4.516 8 H 0.028 0.972 9 C 0.181 3.819 10 O -0.352 6.352 11 C 0.498 3.502 12 O -0.518 6.518 13 C -0.057 4.057 14 C -0.123 4.123 15 C 0.142 3.858 16 N -0.485 5.485 17 C 0.332 3.668 18 N -0.415 5.415 19 C -0.029 4.029 20 C -0.040 4.040 21 N -0.506 5.506 22 C 0.185 3.815 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.112 4.112 26 C -0.124 4.124 27 H 0.270 0.730 28 H 0.176 0.824 29 H 0.224 0.776 30 H 0.203 0.797 31 H 0.202 0.798 32 H 0.226 0.774 33 H 0.152 0.848 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.120 4.495 10.276 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.747 3.253 4 H -0.186 1.186 5 H -0.223 1.223 6 H -0.123 1.123 7 C -0.553 4.553 8 H 0.046 0.954 9 C 0.147 3.853 10 O -0.269 6.269 11 C 0.342 3.658 12 O -0.407 6.407 13 C -0.066 4.066 14 C -0.143 4.143 15 C -0.015 4.015 16 N -0.198 5.198 17 C 0.105 3.895 18 N -0.097 5.097 19 C -0.158 4.158 20 C -0.184 4.184 21 N -0.224 5.224 22 C -0.096 4.096 23 C -0.154 4.154 24 C -0.180 4.180 25 C -0.150 4.150 26 C -0.161 4.161 27 H 0.079 0.921 28 H 0.194 0.806 29 H 0.241 0.759 30 H 0.220 0.780 31 H 0.219 0.781 32 H 0.242 0.758 33 H 0.169 0.831 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.663 3.877 11.268 18.895 hybrid contribution -0.872 0.473 -1.294 1.630 sum 13.792 4.350 9.975 17.568 Atomic orbital electron populations 1.70085 1.08747 1.28714 1.49370 1.26007 0.95389 1.03727 0.92196 0.86125 0.81894 0.77362 0.79939 1.18555 1.22288 1.12265 1.20859 0.89967 0.93120 1.51378 0.95393 1.21807 0.92433 0.93701 0.77345 1.86580 1.70632 1.53349 1.16386 1.21101 0.76048 0.82789 0.85910 1.90770 1.38345 1.23462 1.88138 1.19656 0.99820 0.96971 0.90193 1.22898 0.95627 0.93967 1.01846 1.23371 0.94458 0.99026 0.84687 1.66958 1.11128 1.05720 1.36002 1.17898 0.96249 0.91359 0.84020 1.43205 1.44976 1.16468 1.05065 1.23325 1.07545 1.03527 0.81410 1.22914 1.03222 0.91002 1.01276 1.70356 1.21731 1.28861 1.01433 1.25800 0.99983 0.86182 0.97676 1.21610 1.01543 1.02402 0.89875 1.23345 0.99744 0.96984 0.97910 1.22480 1.02650 0.94895 0.94932 1.23307 1.00616 0.97931 0.94223 0.92130 0.80641 0.75943 0.78044 0.78077 0.75797 0.83084 0.89411 0.93886 0.91250 0.87849 0.92028 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.96 21.45 0.30 -56.71 16 2 C 0.03 1.54 5.47 84.65 0.46 2.00 16 3 Si 0.92 40.43 24.62 68.60 1.69 42.11 16 4 H -0.26 -10.71 7.09 99.48 0.71 -10.01 16 5 H -0.30 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.20 -7.60 5.66 99.48 0.56 -7.04 16 7 C -0.52 -28.81 7.89 25.60 0.20 -28.61 16 8 H 0.03 1.82 8.05 -2.91 -0.02 1.80 16 9 C 0.18 7.96 0.24 -11.01 0.00 7.95 16 10 O -0.35 -14.38 7.34 -55.78 -0.41 -14.79 16 11 C 0.50 20.34 7.47 70.43 0.53 20.86 16 12 O -0.52 -24.79 14.95 20.07 0.30 -24.49 16 13 C -0.06 -1.78 5.91 -19.91 -0.12 -1.90 16 14 C -0.12 -2.81 9.70 22.65 0.22 -2.59 16 15 C 0.14 2.53 11.17 84.64 0.95 3.48 16 16 N -0.49 -11.00 9.87 -192.95 -1.90 -12.90 16 17 C 0.33 8.67 7.50 132.77 1.00 9.66 16 18 N -0.41 -10.53 2.98 -355.92 -1.06 -11.59 16 19 C -0.03 -0.63 11.17 83.03 0.93 0.29 16 20 C -0.04 -0.89 11.85 83.51 0.99 0.10 16 21 N -0.51 -13.91 11.24 -199.68 -2.24 -16.16 16 22 C 0.18 4.77 11.89 179.99 2.14 6.91 16 23 C -0.13 -3.85 9.07 22.77 0.21 -3.64 16 24 C -0.14 -5.52 6.39 31.18 0.20 -5.32 16 25 C -0.11 -3.73 7.81 31.18 0.24 -3.49 16 26 C -0.12 -4.40 6.16 31.12 0.19 -4.20 16 27 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 28 H 0.18 3.41 7.71 -2.91 -0.02 3.39 16 29 H 0.22 1.74 8.06 -2.91 -0.02 1.71 16 30 H 0.20 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.20 3.09 8.06 -2.91 -0.02 3.07 16 32 H 0.23 4.83 7.06 -2.91 -0.02 4.81 16 33 H 0.15 4.42 6.46 -2.91 -0.02 4.40 16 34 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.04 1.88 8.09 -2.39 -0.02 1.87 16 36 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 37 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.06 2.32 5.83 -2.39 -0.01 2.31 16 39 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -75.88 332.74 5.74 -70.14 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.94 Total: 22.89 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 8.13 Total: 1.50 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -4.91 Total: -97.36 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.11 Total: -39.29 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 1.69 Total: 42.11 kcal Total: -75.88 5.74 -70.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788144639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.925 kcal (2) G-P(sol) polarization free energy of solvation -75.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds