Wall clock time and date at job start Tue Mar 31 2020 10:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21249 * 120.00680 * 2 1 4 4 C 1.47191 * 119.99755 * 180.02562 * 2 1 3 5 5 C 1.39612 * 120.10022 * 353.81556 * 4 2 1 6 6 C 1.39246 * 119.68080 * 179.97438 * 5 4 2 7 7 C 1.47840 * 120.06337 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99918 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99784 * 180.02562 * 7 6 5 10 10 C 1.40528 * 119.99756 * 180.02562 * 9 7 6 11 11 C 1.40666 * 126.08587 * 359.69423 * 10 9 7 12 12 N 1.30906 * 108.38388 * 179.81302 * 11 10 9 13 13 N 1.40066 * 108.41418 * 0.44599 * 12 11 10 14 14 C 1.37308 * 126.06753 * 179.69673 * 13 12 11 15 15 H 1.08002 * 120.00169 * 185.93321 * 14 13 12 16 16 C 1.38992 * 120.00284 * 5.93438 * 14 13 12 17 17 N 1.31298 * 119.99579 * 354.02134 * 16 14 13 18 18 Si 1.86799 * 119.99982 * 174.01845 * 16 14 13 19 19 H 1.48499 * 109.47116 * 94.98491 * 18 16 14 20 20 H 1.48503 * 109.46898 * 214.98141 * 18 16 14 21 21 H 1.48492 * 109.47489 * 334.97917 * 18 16 14 22 22 C 1.35692 * 126.08333 * 180.02562 * 10 9 7 23 23 C 1.39751 * 119.87314 * 0.02562 * 6 5 4 24 24 C 1.38096 * 120.20197 * 359.97342 * 23 6 5 25 25 C 1.38030 * 120.32785 * 359.79187 * 24 23 6 26 26 C 1.50698 * 119.94135 * 180.23292 * 25 24 23 27 27 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47329 * 59.99224 * 1 2 3 29 29 H 1.09002 * 109.46845 * 299.99843 * 1 2 3 30 30 H 1.08002 * 120.16130 * 359.95100 * 5 4 2 31 31 H 0.96999 * 120.00026 * 0.02562 * 9 7 6 32 32 H 1.07999 * 125.80185 * 359.97438 * 11 10 9 33 33 H 0.97002 * 119.99454 * 179.97438 * 17 16 14 34 34 H 1.08004 * 126.24771 * 359.97438 * 22 10 9 35 35 H 1.07998 * 119.90133 * 179.97438 * 23 6 5 36 36 H 1.08002 * 119.83947 * 180.02562 * 24 23 6 37 37 H 1.09002 * 109.47132 * 263.40200 * 26 25 24 38 38 H 1.08994 * 109.47311 * 23.39971 * 26 25 24 39 39 H 1.09003 * 109.47147 * 143.40004 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 1.5529 -2.4815 0.1290 6 6 2.2578 -3.6824 0.1268 7 6 1.5359 -4.9652 0.2641 8 8 0.3255 -4.9724 0.3785 9 7 2.2195 -6.1268 0.2623 10 6 1.5332 -7.3461 0.3922 11 6 0.1428 -7.5030 0.5372 12 7 -0.1215 -8.7821 0.6246 13 7 1.0852 -9.4894 0.5495 14 6 1.2276 -10.8537 0.6098 15 1 2.2139 -11.2930 0.6381 16 6 0.1026 -11.6695 0.6343 17 7 -1.0939 -11.1354 0.7184 18 14 0.2929 -13.5258 0.5476 19 1 0.2946 -14.0879 1.9221 20 1 -0.8378 -14.1038 -0.2222 21 1 1.5730 -13.8613 -0.1260 22 6 2.0944 -8.5815 0.4064 23 6 3.6491 -3.6726 -0.0042 24 6 4.3265 -2.4760 -0.1321 25 6 3.6356 -1.2810 -0.1359 26 6 4.3831 0.0194 -0.2812 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 0.4777 -2.4837 0.2308 31 1 3.1852 -6.1210 0.1714 32 1 -0.5832 -6.7041 0.5684 33 1 -1.8790 -11.7048 0.7352 34 1 3.1474 -8.8056 0.3197 35 1 4.1963 -4.6037 -0.0056 36 1 5.4017 -2.4753 -0.2335 37 1 4.5569 0.4507 0.7047 38 1 5.3392 -0.1638 -0.7713 39 1 3.7937 0.7121 -0.8820 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789919874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:57 Heat of formation + Delta-G solvation = 41.811070 kcal Electronic energy + Delta-G solvation = -24255.106915 eV Core-core repulsion = 20551.082873 eV Total energy + Delta-G solvation = -3704.024042 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.68152 -39.88406 -38.91816 -37.73051 -34.37542 -33.36824 -32.97793 -32.22346 -30.27570 -29.60635 -28.24616 -27.11540 -24.95187 -23.90980 -22.74423 -21.14075 -20.82770 -19.86127 -19.29984 -17.78605 -17.30146 -16.18553 -15.89255 -15.58606 -15.43752 -15.39334 -15.09118 -14.64754 -14.40725 -14.19507 -13.99184 -13.67617 -13.45999 -13.20880 -12.92928 -12.57020 -12.39805 -12.15568 -12.13641 -12.05946 -11.72223 -11.54854 -11.43617 -11.28677 -10.98715 -10.55256 -10.22435 -9.75779 -9.33454 -9.29740 -9.20713 -8.96869 -8.84758 -8.09640 -6.74443 -6.59715 -4.26097 0.34539 0.83448 2.05708 2.85570 3.01120 3.03283 3.08764 3.45808 3.52006 3.79528 3.83279 3.85563 4.42155 4.43891 4.49788 4.67966 4.71544 4.88794 4.97957 4.99143 5.08097 5.17860 5.18842 5.34479 5.42462 5.49897 5.68810 5.72559 5.85446 5.97565 6.05421 6.20633 6.25251 6.40270 6.54499 6.85827 6.91728 7.06200 7.19518 7.27570 7.82267 8.10598 8.22856 8.57679 8.77453 9.33948 9.62836 10.36527 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.036438 B = 0.002441 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.236499 B =11470.270827 C =12211.750518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.399 3.601 3 O -0.459 6.459 4 C -0.186 4.186 5 C -0.013 4.013 6 C -0.136 4.136 7 C 0.540 3.460 8 O -0.533 6.533 9 N -0.615 5.615 10 C -0.062 4.062 11 C -0.030 4.030 12 N -0.261 5.261 13 N -0.141 5.141 14 C -0.323 4.323 15 H 0.117 0.883 16 C 0.046 3.954 17 N -0.768 5.768 18 Si 0.934 3.066 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.263 1.263 22 C -0.083 4.083 23 C -0.054 4.054 24 C -0.142 4.142 25 C -0.009 4.009 26 C -0.124 4.124 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.149 0.851 31 H 0.396 0.604 32 H 0.177 0.823 33 H 0.275 0.725 34 H 0.146 0.854 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.549 16.187 -2.113 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.279 3.721 3 O -0.336 6.336 4 C -0.187 4.187 5 C -0.032 4.032 6 C -0.140 4.140 7 C 0.326 3.674 8 O -0.411 6.411 9 N -0.257 5.257 10 C -0.168 4.168 11 C -0.206 4.206 12 N -0.092 5.092 13 N 0.091 4.909 14 C -0.456 4.456 15 H 0.134 0.866 16 C -0.171 4.171 17 N -0.395 5.395 18 Si 0.758 3.242 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.187 1.187 22 C -0.234 4.234 23 C -0.073 4.073 24 C -0.159 4.159 25 C -0.010 4.010 26 C -0.180 4.180 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.167 0.833 31 H 0.230 0.770 32 H 0.194 0.806 33 H 0.086 0.914 34 H 0.164 0.836 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.824 15.754 -1.890 17.691 hybrid contribution 1.353 -0.464 -0.155 1.439 sum 9.177 15.290 -2.044 17.949 Atomic orbital electron populations 1.22277 0.93537 1.05452 1.04958 1.22426 0.91716 0.87335 0.70651 1.90481 1.71527 1.34540 1.37014 1.20314 0.94015 0.94867 1.09534 1.21639 1.00964 0.89772 0.90814 1.20014 0.93722 0.94081 1.06153 1.17940 0.87172 0.82997 0.79245 1.90670 1.13491 1.86648 1.50284 1.42392 1.09370 1.04106 1.69803 1.17245 0.92354 0.83506 1.23651 1.24133 0.93594 0.95363 1.07474 1.78258 1.03457 1.01929 1.25567 1.44555 1.02893 1.04931 1.38473 1.19878 0.95411 0.76871 1.53392 0.86576 1.25654 0.94578 1.01453 0.95411 1.70224 0.98022 1.36373 1.34842 0.85817 0.78950 0.80522 0.78906 1.19638 1.20016 1.18735 1.21259 0.94286 0.88347 1.19498 1.21607 0.93264 0.98705 0.93759 1.20994 1.00356 0.91326 1.03267 1.20382 0.92484 0.96158 0.91951 1.21133 0.99378 0.94136 1.03346 0.89334 0.88655 0.88625 0.83330 0.77009 0.80626 0.91418 0.83650 0.84996 0.84815 0.90349 0.91963 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.57 10.19 36.00 0.37 -1.21 16 2 C 0.40 4.13 7.15 -30.68 -0.22 3.91 16 3 O -0.46 -5.60 14.08 5.58 0.08 -5.52 16 4 C -0.19 -2.04 5.86 -105.11 -0.62 -2.66 16 5 C -0.01 -0.15 8.97 -38.69 -0.35 -0.50 16 6 C -0.14 -1.79 5.87 -105.03 -0.62 -2.41 16 7 C 0.54 9.34 7.74 -12.33 -0.10 9.24 16 8 O -0.53 -11.08 13.48 5.30 0.07 -11.01 16 9 N -0.61 -10.69 5.41 -10.85 -0.06 -10.74 16 10 C -0.06 -1.40 6.90 -83.86 -0.58 -1.98 16 11 C -0.03 -0.78 10.85 -17.03 -0.18 -0.97 16 12 N -0.26 -7.52 10.42 30.80 0.32 -7.20 16 13 N -0.14 -3.83 3.74 -11.41 -0.04 -3.87 16 14 C -0.32 -8.44 10.24 -14.82 -0.15 -8.59 16 15 H 0.12 2.70 7.84 -52.49 -0.41 2.29 16 16 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 17 N -0.77 -21.26 11.84 55.50 0.66 -20.60 16 18 Si 0.93 18.66 29.56 -169.99 -5.02 13.64 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 23 C -0.05 -0.56 9.54 -39.07 -0.37 -0.93 16 24 C -0.14 -1.29 9.64 -39.71 -0.38 -1.67 16 25 C -0.01 -0.09 5.93 -104.06 -0.62 -0.71 16 26 C -0.12 -1.10 8.71 36.00 0.31 -0.78 16 27 H 0.09 0.65 5.64 -51.93 -0.29 0.35 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.15 1.71 5.57 -52.49 -0.29 1.42 16 31 H 0.40 5.21 6.85 -40.82 -0.28 4.93 16 32 H 0.18 4.50 5.91 -52.49 -0.31 4.19 16 33 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.15 2.76 8.06 -52.48 -0.42 2.34 16 35 H 0.13 1.05 6.39 -52.49 -0.34 0.71 16 36 H 0.13 0.87 8.05 -52.49 -0.42 0.45 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.43 8.03 -51.93 -0.42 0.01 16 39 H 0.09 0.92 5.87 -51.93 -0.30 0.61 16 LS Contribution 335.36 15.07 5.05 5.05 Total: -1.00 -33.91 335.36 -6.62 -40.53 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -3.89 Total: 9.98 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -3.79 Total: -10.27 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.88 Total: -42.41 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.15 Total: -16.53 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.91 -6.62 -40.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789919874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.343 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds