Wall clock time and date at job start Tue Mar 31 2020 10:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21249 * 120.00680 * 2 1 4 4 C 1.47191 * 119.99755 * 180.02562 * 2 1 3 5 5 C 1.39612 * 120.10022 * 353.81556 * 4 2 1 6 6 C 1.39246 * 119.68080 * 179.97438 * 5 4 2 7 7 C 1.47840 * 120.06337 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99918 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99784 * 180.02562 * 7 6 5 10 10 C 1.40528 * 119.99756 * 180.02562 * 9 7 6 11 11 C 1.40666 * 126.08587 * 359.69423 * 10 9 7 12 12 N 1.30906 * 108.38388 * 179.81302 * 11 10 9 13 13 N 1.40066 * 108.41418 * 0.44599 * 12 11 10 14 14 C 1.37308 * 126.06753 * 179.69673 * 13 12 11 15 15 H 1.08002 * 120.00169 * 185.93321 * 14 13 12 16 16 C 1.38992 * 120.00284 * 5.93438 * 14 13 12 17 17 N 1.31298 * 119.99579 * 354.02134 * 16 14 13 18 18 Si 1.86799 * 119.99982 * 174.01845 * 16 14 13 19 19 H 1.48499 * 109.47116 * 94.98491 * 18 16 14 20 20 H 1.48503 * 109.46898 * 214.98141 * 18 16 14 21 21 H 1.48492 * 109.47489 * 334.97917 * 18 16 14 22 22 C 1.35692 * 126.08333 * 180.02562 * 10 9 7 23 23 C 1.39751 * 119.87314 * 0.02562 * 6 5 4 24 24 C 1.38096 * 120.20197 * 359.97342 * 23 6 5 25 25 C 1.38030 * 120.32785 * 359.79187 * 24 23 6 26 26 C 1.50698 * 119.94135 * 180.23292 * 25 24 23 27 27 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47329 * 59.99224 * 1 2 3 29 29 H 1.09002 * 109.46845 * 299.99843 * 1 2 3 30 30 H 1.08002 * 120.16130 * 359.95100 * 5 4 2 31 31 H 0.96999 * 120.00026 * 0.02562 * 9 7 6 32 32 H 1.07999 * 125.80185 * 359.97438 * 11 10 9 33 33 H 0.97002 * 119.99454 * 179.97438 * 17 16 14 34 34 H 1.08004 * 126.24771 * 359.97438 * 22 10 9 35 35 H 1.07998 * 119.90133 * 179.97438 * 23 6 5 36 36 H 1.08002 * 119.83947 * 180.02562 * 24 23 6 37 37 H 1.09002 * 109.47132 * 263.40200 * 26 25 24 38 38 H 1.08994 * 109.47311 * 23.39971 * 26 25 24 39 39 H 1.09003 * 109.47147 * 143.40004 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 1.5529 -2.4815 0.1290 6 6 2.2578 -3.6824 0.1268 7 6 1.5359 -4.9652 0.2641 8 8 0.3255 -4.9724 0.3785 9 7 2.2195 -6.1268 0.2623 10 6 1.5332 -7.3461 0.3922 11 6 0.1428 -7.5030 0.5372 12 7 -0.1215 -8.7821 0.6246 13 7 1.0852 -9.4894 0.5495 14 6 1.2276 -10.8537 0.6098 15 1 2.2139 -11.2930 0.6381 16 6 0.1026 -11.6695 0.6343 17 7 -1.0939 -11.1354 0.7184 18 14 0.2929 -13.5258 0.5476 19 1 0.2946 -14.0879 1.9221 20 1 -0.8378 -14.1038 -0.2222 21 1 1.5730 -13.8613 -0.1260 22 6 2.0944 -8.5815 0.4064 23 6 3.6491 -3.6726 -0.0042 24 6 4.3265 -2.4760 -0.1321 25 6 3.6356 -1.2810 -0.1359 26 6 4.3831 0.0194 -0.2812 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 0.4777 -2.4837 0.2308 31 1 3.1852 -6.1210 0.1714 32 1 -0.5832 -6.7041 0.5684 33 1 -1.8790 -11.7048 0.7352 34 1 3.1474 -8.8056 0.3197 35 1 4.1963 -4.6037 -0.0056 36 1 5.4017 -2.4753 -0.2335 37 1 4.5569 0.4507 0.7047 38 1 5.3392 -0.1638 -0.7713 39 1 3.7937 0.7121 -0.8820 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789919874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:57 Heat of formation + Delta-G solvation = 20.190421 kcal Electronic energy + Delta-G solvation = -24256.044457 eV Core-core repulsion = 20551.082873 eV Total energy + Delta-G solvation = -3704.961584 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.87994 -41.30972 -40.27964 -38.79879 -36.00956 -35.06613 -33.90270 -33.13466 -32.20733 -30.35341 -29.81549 -28.23608 -26.73470 -24.80588 -23.89696 -22.80102 -21.95072 -21.39958 -20.67339 -19.28451 -18.69468 -17.43811 -17.25766 -16.79453 -16.51054 -16.46116 -16.29313 -16.03050 -15.72406 -15.13704 -15.10197 -15.04588 -14.89728 -14.59998 -14.36555 -13.49157 -13.32155 -13.24913 -13.06281 -13.02019 -12.90191 -12.87917 -12.84652 -12.79417 -12.36866 -12.07400 -11.86302 -11.02490 -10.89912 -10.78113 -10.50595 -10.12101 -10.10008 -9.86929 -8.53033 -8.47087 -6.23631 -0.50097 -0.09073 1.18758 1.31644 1.40938 1.58819 1.67034 1.92492 2.01541 2.25364 2.45832 2.84707 2.89946 3.04703 3.09200 3.62791 3.67619 3.90746 3.95383 4.13171 4.29764 4.42471 4.47230 4.52925 4.60081 4.64535 4.68193 4.80528 4.93095 5.00852 5.03506 5.08356 5.10794 5.22214 5.24329 5.30307 5.43294 5.48800 5.73082 5.96501 6.31210 6.47666 6.69565 6.73967 7.32272 7.47059 7.68110 8.52618 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.036438 B = 0.002441 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.236499 B =11470.270827 C =12211.750518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.399 3.601 3 O -0.480 6.480 4 C -0.197 4.197 5 C -0.016 4.016 6 C -0.157 4.157 7 C 0.541 3.459 8 O -0.574 6.574 9 N -0.608 5.608 10 C -0.046 4.046 11 C -0.058 4.058 12 N -0.311 5.311 13 N -0.168 5.168 14 C -0.354 4.354 15 H 0.142 0.858 16 C -0.007 4.007 17 N -0.825 5.825 18 Si 1.018 2.982 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.243 1.243 22 C -0.077 4.077 23 C -0.044 4.044 24 C -0.133 4.133 25 C -0.010 4.010 26 C -0.121 4.121 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.145 0.855 31 H 0.419 0.581 32 H 0.169 0.831 33 H 0.276 0.724 34 H 0.191 0.809 35 H 0.159 0.841 36 H 0.171 0.829 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.995 16.385 -2.574 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.280 3.720 3 O -0.359 6.359 4 C -0.198 4.198 5 C -0.035 4.035 6 C -0.160 4.160 7 C 0.331 3.669 8 O -0.455 6.455 9 N -0.252 5.252 10 C -0.152 4.152 11 C -0.233 4.233 12 N -0.143 5.143 13 N 0.063 4.937 14 C -0.485 4.485 15 H 0.159 0.841 16 C -0.218 4.218 17 N -0.452 5.452 18 Si 0.837 3.163 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.166 1.166 22 C -0.228 4.228 23 C -0.063 4.063 24 C -0.150 4.150 25 C -0.011 4.011 26 C -0.177 4.177 27 H 0.107 0.893 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.162 0.838 31 H 0.257 0.743 32 H 0.185 0.815 33 H 0.086 0.914 34 H 0.208 0.792 35 H 0.177 0.823 36 H 0.188 0.812 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.328 15.989 -2.355 19.736 hybrid contribution 0.374 -0.267 -0.020 0.460 sum 11.703 15.722 -2.375 19.743 Atomic orbital electron populations 1.22304 0.91775 1.05865 1.06084 1.22708 0.92741 0.86810 0.69752 1.90479 1.72121 1.35012 1.38240 1.20430 0.94772 0.94588 1.10007 1.21649 1.01002 0.90034 0.90850 1.19706 0.94994 0.91824 1.09507 1.18643 0.86884 0.84126 0.77293 1.90652 1.15680 1.87384 1.51756 1.42280 1.10416 1.02424 1.70116 1.17301 0.91262 0.85502 1.21174 1.24198 0.95511 0.94713 1.08914 1.78151 1.05678 1.03200 1.27309 1.44845 1.03111 1.05798 1.39913 1.20619 0.96901 0.76987 1.53950 0.84063 1.26889 0.93807 1.07025 0.94119 1.70405 0.99196 1.38553 1.37088 0.84589 0.79447 0.73160 0.79080 1.18990 1.20308 1.16569 1.22019 0.95674 0.87695 1.17390 1.21874 0.91824 1.00495 0.92066 1.21357 1.02019 0.90085 1.01579 1.20755 0.92283 0.97423 0.90601 1.21132 1.00140 0.93065 1.03394 0.89292 0.87371 0.87505 0.83794 0.74270 0.81459 0.91407 0.79228 0.82342 0.81204 0.90255 0.89421 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.99 10.19 71.23 0.73 -2.26 16 2 C 0.40 7.94 7.15 28.04 0.20 8.14 16 3 O -0.48 -11.33 14.08 -2.93 -0.04 -11.37 16 4 C -0.20 -4.07 5.86 -20.18 -0.12 -4.19 16 5 C -0.02 -0.38 8.97 22.84 0.20 -0.18 16 6 C -0.16 -3.91 5.87 -20.13 -0.12 -4.03 16 7 C 0.54 18.56 7.74 86.78 0.67 19.23 16 8 O -0.57 -24.70 13.48 -3.96 -0.05 -24.75 16 9 N -0.61 -20.26 5.41 -306.52 -1.66 -21.92 16 10 C -0.05 -2.08 6.90 37.75 0.26 -1.82 16 11 C -0.06 -3.14 10.85 85.42 0.93 -2.22 16 12 N -0.31 -18.71 10.42 -56.46 -0.59 -19.30 16 13 N -0.17 -9.21 3.74 -190.00 -0.71 -9.92 16 14 C -0.35 -18.47 10.24 84.02 0.86 -17.61 16 15 H 0.14 6.34 7.84 -2.91 -0.02 6.32 16 16 C -0.01 -0.35 5.50 84.95 0.47 0.12 16 17 N -0.82 -47.44 11.84 21.66 0.26 -47.19 16 18 Si 1.02 38.14 29.56 68.60 2.03 40.16 16 19 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 20 H -0.28 -10.39 7.11 99.48 0.71 -9.68 16 21 H -0.24 -8.18 7.11 99.48 0.71 -7.48 16 22 C -0.08 -3.48 11.49 83.38 0.96 -2.52 16 23 C -0.04 -0.75 9.54 22.60 0.22 -0.54 16 24 C -0.13 -1.88 9.64 22.19 0.21 -1.67 16 25 C -0.01 -0.18 5.93 -19.50 -0.12 -0.29 16 26 C -0.12 -1.82 8.71 71.24 0.62 -1.20 16 27 H 0.09 1.30 5.64 -2.39 -0.01 1.29 16 28 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.14 3.41 5.57 -2.91 -0.02 3.40 16 31 H 0.42 9.73 6.85 -92.71 -0.63 9.09 16 32 H 0.17 9.15 5.91 -2.91 -0.02 9.13 16 33 H 0.28 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.19 6.56 8.06 -2.91 -0.02 6.53 16 35 H 0.16 1.78 6.39 -2.91 -0.02 1.76 16 36 H 0.17 1.22 8.05 -2.91 -0.02 1.20 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 38 H 0.09 0.86 8.03 -2.39 -0.02 0.84 16 39 H 0.08 1.44 5.87 -2.39 -0.01 1.43 16 Total: -1.00 -78.39 335.36 5.69 -72.69 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.49 Total: 32.62 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 5.97 Total: -11.03 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -2.70 Total: -98.32 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.09 Total: -36.12 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.16 kcal Total: -78.39 5.69 -72.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789919874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.881 kcal (2) G-P(sol) polarization free energy of solvation -78.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds