Wall clock time and date at job start Tue Mar 31 2020 10:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86802 * 119.99995 * 2 1 4 4 H 1.48496 * 109.47214 * 270.00003 * 3 2 1 5 5 H 1.48496 * 109.47347 * 30.00387 * 3 2 1 6 6 H 1.48501 * 109.46738 * 150.00524 * 3 2 1 7 7 C 1.38654 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00189 * 359.97438 * 7 2 1 9 9 O 1.34829 * 119.99804 * 179.97438 * 7 2 1 10 10 C 1.35757 * 117.00114 * 174.96315 * 9 7 2 11 11 C 1.38946 * 120.02940 * 5.36129 * 10 9 7 12 12 C 1.38122 * 120.07030 * 179.97438 * 11 10 9 13 13 C 1.38211 * 120.13879 * 359.72358 * 12 11 10 14 14 C 1.38919 * 120.06006 * 0.55462 * 13 12 11 15 15 N 1.39925 * 120.02975 * 179.71970 * 14 13 12 16 16 C 1.34785 * 119.99929 * 214.84444 * 15 14 13 17 17 O 1.21282 * 119.99464 * 355.49464 * 16 15 14 18 18 C 1.50696 * 120.00043 * 175.48854 * 16 15 14 19 19 C 1.52996 * 109.46805 * 180.02562 * 18 16 15 20 20 C 1.50709 * 109.47057 * 180.02562 * 19 18 16 21 21 C 1.38600 * 120.79845 * 89.99872 * 20 19 18 22 22 N 1.32335 * 119.09789 * 179.72769 * 21 20 19 23 23 C 1.31795 * 120.82164 * 0.27226 * 22 21 20 24 24 N 1.31791 * 121.75558 * 0.02562 * 23 22 21 25 25 C 1.32338 * 120.81622 * 359.97438 * 24 23 22 26 26 C 1.38729 * 120.03544 * 185.33958 * 10 9 7 27 27 H 0.96999 * 119.99590 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.97070 * 359.96257 * 11 10 9 29 29 H 1.07996 * 119.93427 * 180.02562 * 12 11 10 30 30 H 1.07995 * 119.96872 * 180.30116 * 13 12 11 31 31 H 0.96997 * 120.00506 * 34.85216 * 15 14 13 32 32 H 1.09005 * 109.47075 * 60.00813 * 18 16 15 33 33 H 1.08995 * 109.47439 * 300.00370 * 18 16 15 34 34 H 1.08997 * 109.47636 * 60.00682 * 19 18 16 35 35 H 1.09003 * 109.47482 * 300.00225 * 19 18 16 36 36 H 1.07997 * 120.44917 * 359.97438 * 21 20 19 37 37 H 1.08001 * 119.11849 * 179.97438 * 23 22 21 38 38 H 1.07996 * 120.44318 * 179.97438 * 25 24 23 39 39 H 1.08005 * 120.06871 * 0.04663 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4472 2.6527 0.7001 6 1 3.5472 1.4401 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9735 -2.4058 0.1046 11 6 3.2220 -3.5745 0.0948 12 6 3.8483 -4.8009 0.2018 13 6 5.2242 -4.8701 0.3131 14 6 5.9805 -3.7050 0.3293 15 7 7.3729 -3.7756 0.4479 16 6 8.0397 -2.8270 1.1351 17 8 7.4436 -1.8694 1.5809 18 6 9.5257 -2.9563 1.3497 19 6 10.0311 -1.7566 2.1535 20 6 11.5173 -1.8855 2.3675 21 6 12.4146 -1.3513 1.4562 22 7 13.7125 -1.4794 1.6802 23 6 14.1541 -2.1096 2.7502 24 7 13.3307 -2.6351 3.6349 25 6 12.0198 -2.5464 3.4773 26 6 5.3542 -2.4715 0.2221 27 1 -0.4849 0.8401 0.0004 28 1 2.1471 -3.5239 0.0037 29 1 3.2621 -5.7079 0.1935 30 1 5.7114 -5.8307 0.3917 31 1 7.8584 -4.5071 0.0356 32 1 10.0309 -2.9861 0.3843 33 1 9.7351 -3.8748 1.8979 34 1 9.5260 -1.7271 3.1189 35 1 9.8217 -0.8378 1.6056 36 1 12.0593 -0.8340 0.5772 37 1 15.2192 -2.1984 2.9056 38 1 11.3505 -2.9796 4.2059 39 1 5.9404 -1.5644 0.2303 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794230516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:59 Heat of formation + Delta-G solvation = 12.761396 kcal Electronic energy + Delta-G solvation = -23896.877452 eV Core-core repulsion = 20191.593721 eV Total energy + Delta-G solvation = -3705.283731 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.43481 -40.33234 -38.84457 -36.82460 -35.11829 -34.22864 -34.08668 -32.37729 -31.00934 -29.62502 -28.61628 -25.90311 -25.18046 -24.99179 -23.04883 -22.05023 -21.19747 -20.23090 -18.12928 -18.03062 -18.00532 -17.77252 -17.06442 -15.79534 -15.68077 -15.24207 -15.18230 -14.85175 -14.47298 -14.09601 -14.05808 -13.94559 -13.75463 -13.66342 -13.34584 -12.84361 -12.69266 -12.38961 -12.29560 -11.71682 -11.53530 -11.24941 -11.22758 -11.21555 -11.01391 -10.86296 -10.24579 -9.98628 -9.83580 -9.66986 -9.60954 -9.29103 -8.86747 -7.86016 -7.34946 -6.41254 -4.07981 0.45488 0.66169 1.86117 2.19384 2.68762 3.04437 3.25354 3.27409 3.38143 3.45182 3.75733 3.82174 4.18458 4.22954 4.26254 4.39462 4.46180 4.54990 4.76294 4.84045 4.93288 5.07095 5.13321 5.19059 5.30201 5.53165 5.67363 5.67793 5.72153 5.98617 6.02866 6.08264 6.23599 6.46742 6.53626 6.74386 6.89049 7.08332 7.29597 7.52891 7.55569 7.65940 7.79840 8.02478 8.18976 8.94104 9.56707 10.66077 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018017 B = 0.002612 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.675310 B =10717.184452 C =11963.796838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.213 6.213 10 C 0.172 3.828 11 C -0.231 4.231 12 C -0.060 4.060 13 C -0.228 4.228 14 C 0.171 3.829 15 N -0.670 5.670 16 C 0.505 3.495 17 O -0.510 6.510 18 C -0.133 4.133 19 C -0.060 4.060 20 C -0.184 4.184 21 C 0.151 3.849 22 N -0.519 5.519 23 C 0.284 3.716 24 N -0.519 5.519 25 C 0.150 3.850 26 C -0.188 4.188 27 H 0.279 0.721 28 H 0.134 0.866 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.407 0.593 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.169 0.831 37 H 0.195 0.805 38 H 0.169 0.831 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.371 -8.265 2.674 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.464 4.464 8 H 0.125 0.875 9 O -0.118 6.118 10 C 0.119 3.881 11 C -0.251 4.251 12 C -0.079 4.079 13 C -0.249 4.249 14 C 0.078 3.922 15 N -0.315 5.315 16 C 0.292 3.708 17 O -0.384 6.384 18 C -0.173 4.173 19 C -0.099 4.099 20 C -0.188 4.188 21 C -0.015 4.015 22 N -0.232 5.232 23 C -0.003 4.003 24 N -0.232 5.232 25 C -0.015 4.015 26 C -0.209 4.209 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.242 0.758 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.186 0.814 37 H 0.212 0.788 38 H 0.186 0.814 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 23.871 -7.262 3.156 25.150 hybrid contribution -0.553 0.230 -0.356 0.696 sum 23.319 -7.032 2.800 24.516 Atomic orbital electron populations 1.69647 1.05549 1.28510 1.47951 1.24461 0.95025 0.98849 0.95588 0.86203 0.80544 0.81398 0.78998 1.19873 1.20782 1.18112 1.20783 0.76824 0.96665 1.52171 0.87524 1.83582 1.22618 1.25576 1.79998 1.18882 0.91194 0.85588 0.92431 1.21313 1.01324 0.91839 1.10623 1.20571 0.93406 0.96883 0.97053 1.20349 0.94008 0.95755 1.14738 1.17166 0.81334 0.93582 1.00093 1.43409 1.06093 1.28309 1.53667 1.20694 0.89569 0.82608 0.77911 1.90800 1.69259 1.30078 1.48295 1.21646 0.92260 1.00667 1.02741 1.20246 0.88302 0.98735 1.02580 1.21746 0.98664 1.00826 0.97532 1.23256 0.88055 0.92757 0.97463 1.68454 1.16810 1.16233 1.21671 1.24994 1.00856 0.89129 0.85337 1.68454 1.04593 1.19580 1.30559 1.23246 0.91738 0.91737 0.94828 1.20150 0.92318 0.97416 1.10989 0.91043 0.84810 0.86728 0.87191 0.75839 0.88554 0.88533 0.89102 0.89089 0.81384 0.78840 0.81407 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.49 13.96 55.48 0.77 -24.71 16 2 C 0.06 1.82 5.49 -17.51 -0.10 1.72 16 3 Si 0.90 22.10 28.62 -169.99 -4.86 17.23 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.26 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.39 -11.06 9.95 30.89 0.31 -10.75 16 8 H 0.11 3.06 5.43 -52.49 -0.29 2.78 16 9 O -0.21 -5.76 8.58 0.03 0.00 -5.76 16 10 C 0.17 4.07 6.64 -39.14 -0.26 3.81 16 11 C -0.23 -4.95 9.17 -39.36 -0.36 -5.31 16 12 C -0.06 -1.05 10.03 -39.63 -0.40 -1.45 16 13 C -0.23 -3.58 9.96 -39.34 -0.39 -3.97 16 14 C 0.17 2.89 6.30 -83.72 -0.53 2.36 16 15 N -0.67 -8.10 5.34 -9.88 -0.05 -8.15 16 16 C 0.51 6.19 7.67 -10.98 -0.08 6.11 16 17 O -0.51 -8.79 13.42 5.56 0.07 -8.71 16 18 C -0.13 -0.93 5.68 -27.89 -0.16 -1.09 16 19 C -0.06 -0.45 4.68 -27.88 -0.13 -0.58 16 20 C -0.18 -1.31 5.17 -104.35 -0.54 -1.85 16 21 C 0.15 1.14 11.01 -17.20 -0.19 0.95 16 22 N -0.52 -4.61 10.44 -14.58 -0.15 -4.76 16 23 C 0.28 2.30 12.29 -92.16 -1.13 1.17 16 24 N -0.52 -4.59 10.44 -14.58 -0.15 -4.74 16 25 C 0.15 1.13 11.01 -17.20 -0.19 0.94 16 26 C -0.19 -3.94 8.64 -39.21 -0.34 -4.27 16 27 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.13 2.99 5.63 -52.49 -0.30 2.69 16 29 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.41 3.22 8.82 -40.82 -0.36 2.86 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.74 8.06 -51.93 -0.42 0.33 16 35 H 0.09 0.75 8.06 -51.93 -0.42 0.33 16 36 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.20 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.13 2.93 6.23 -52.48 -0.33 2.60 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -34.59 342.92 -7.89 -42.48 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -4.20 Total: 4.18 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -4.49 Total: -12.22 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.42 Total: -42.37 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.07 Total: -14.48 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.86 Total: 17.23 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.59 -7.89 -42.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794230516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.242 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds