Wall clock time and date at job start Tue Mar 31 2020 10:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86802 * 119.99995 * 2 1 4 4 H 1.48496 * 109.47214 * 270.00003 * 3 2 1 5 5 H 1.48496 * 109.47347 * 30.00387 * 3 2 1 6 6 H 1.48501 * 109.46738 * 150.00524 * 3 2 1 7 7 C 1.38654 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00189 * 359.97438 * 7 2 1 9 9 O 1.34829 * 119.99804 * 179.97438 * 7 2 1 10 10 C 1.35757 * 117.00114 * 174.96315 * 9 7 2 11 11 C 1.38946 * 120.02940 * 5.36129 * 10 9 7 12 12 C 1.38122 * 120.07030 * 179.97438 * 11 10 9 13 13 C 1.38211 * 120.13879 * 359.72358 * 12 11 10 14 14 C 1.38919 * 120.06006 * 0.55462 * 13 12 11 15 15 N 1.39925 * 120.02975 * 179.71970 * 14 13 12 16 16 C 1.34785 * 119.99929 * 214.84444 * 15 14 13 17 17 O 1.21282 * 119.99464 * 355.49464 * 16 15 14 18 18 C 1.50696 * 120.00043 * 175.48854 * 16 15 14 19 19 C 1.52996 * 109.46805 * 180.02562 * 18 16 15 20 20 C 1.50709 * 109.47057 * 180.02562 * 19 18 16 21 21 C 1.38600 * 120.79845 * 89.99872 * 20 19 18 22 22 N 1.32335 * 119.09789 * 179.72769 * 21 20 19 23 23 C 1.31795 * 120.82164 * 0.27226 * 22 21 20 24 24 N 1.31791 * 121.75558 * 0.02562 * 23 22 21 25 25 C 1.32338 * 120.81622 * 359.97438 * 24 23 22 26 26 C 1.38729 * 120.03544 * 185.33958 * 10 9 7 27 27 H 0.96999 * 119.99590 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.97070 * 359.96257 * 11 10 9 29 29 H 1.07996 * 119.93427 * 180.02562 * 12 11 10 30 30 H 1.07995 * 119.96872 * 180.30116 * 13 12 11 31 31 H 0.96997 * 120.00506 * 34.85216 * 15 14 13 32 32 H 1.09005 * 109.47075 * 60.00813 * 18 16 15 33 33 H 1.08995 * 109.47439 * 300.00370 * 18 16 15 34 34 H 1.08997 * 109.47636 * 60.00682 * 19 18 16 35 35 H 1.09003 * 109.47482 * 300.00225 * 19 18 16 36 36 H 1.07997 * 120.44917 * 359.97438 * 21 20 19 37 37 H 1.08001 * 119.11849 * 179.97438 * 23 22 21 38 38 H 1.07996 * 120.44318 * 179.97438 * 25 24 23 39 39 H 1.08005 * 120.06871 * 0.04663 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4472 2.6527 0.7001 6 1 3.5472 1.4401 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9735 -2.4058 0.1046 11 6 3.2220 -3.5745 0.0948 12 6 3.8483 -4.8009 0.2018 13 6 5.2242 -4.8701 0.3131 14 6 5.9805 -3.7050 0.3293 15 7 7.3729 -3.7756 0.4479 16 6 8.0397 -2.8270 1.1351 17 8 7.4436 -1.8694 1.5809 18 6 9.5257 -2.9563 1.3497 19 6 10.0311 -1.7566 2.1535 20 6 11.5173 -1.8855 2.3675 21 6 12.4146 -1.3513 1.4562 22 7 13.7125 -1.4794 1.6802 23 6 14.1541 -2.1096 2.7502 24 7 13.3307 -2.6351 3.6349 25 6 12.0198 -2.5464 3.4773 26 6 5.3542 -2.4715 0.2221 27 1 -0.4849 0.8401 0.0004 28 1 2.1471 -3.5239 0.0037 29 1 3.2621 -5.7079 0.1935 30 1 5.7114 -5.8307 0.3917 31 1 7.8584 -4.5071 0.0356 32 1 10.0309 -2.9861 0.3843 33 1 9.7351 -3.8748 1.8979 34 1 9.5260 -1.7271 3.1189 35 1 9.8217 -0.8378 1.6056 36 1 12.0593 -0.8340 0.5772 37 1 15.2192 -2.1984 2.9056 38 1 11.3505 -2.9796 4.2059 39 1 5.9404 -1.5644 0.2303 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794230516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:58 Heat of formation + Delta-G solvation = -10.515478 kcal Electronic energy + Delta-G solvation = -23897.886813 eV Core-core repulsion = 20191.593721 eV Total energy + Delta-G solvation = -3706.293092 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.02497 -41.53549 -40.43245 -38.35732 -35.81607 -35.50637 -34.66230 -34.44332 -31.86008 -31.11543 -29.93786 -27.27636 -26.55342 -25.54604 -24.15850 -23.20269 -22.58533 -21.30733 -19.87152 -19.41555 -18.58589 -18.53998 -18.18026 -17.18508 -16.91611 -16.68457 -16.28574 -15.81037 -15.74205 -15.59732 -15.38456 -14.79888 -14.57073 -14.53751 -14.39871 -14.26531 -14.20471 -14.02501 -13.33742 -13.23226 -12.94715 -12.73607 -12.50868 -12.13993 -12.04398 -11.82570 -11.81650 -11.49739 -11.27034 -10.87207 -10.79907 -10.33199 -10.18910 -9.39261 -8.92172 -8.51652 -6.23727 -0.10122 0.10360 0.40256 0.64823 1.27779 1.31666 1.49258 1.64321 2.05021 2.26335 2.74890 2.80052 3.07419 3.13072 3.27152 3.30393 3.59490 3.66550 3.84100 3.91891 4.11969 4.22734 4.33251 4.36642 4.39736 4.53951 4.64039 4.67787 4.72130 4.78918 4.98142 5.10760 5.14968 5.35555 5.39289 5.44426 5.46383 5.68378 5.78314 5.91328 5.98442 6.22652 6.50688 6.83228 7.10029 7.22799 7.59382 8.59764 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018017 B = 0.002612 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.675310 B =10717.184452 C =11963.796838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.264 1.264 6 H -0.273 1.273 7 C -0.397 4.397 8 H 0.087 0.913 9 O -0.249 6.249 10 C 0.132 3.868 11 C -0.251 4.251 12 C -0.055 4.055 13 C -0.195 4.195 14 C 0.182 3.818 15 N -0.656 5.656 16 C 0.503 3.497 17 O -0.564 6.564 18 C -0.118 4.118 19 C -0.054 4.054 20 C -0.177 4.177 21 C 0.145 3.855 22 N -0.539 5.539 23 C 0.278 3.722 24 N -0.538 5.538 25 C 0.146 3.854 26 C -0.203 4.203 27 H 0.285 0.715 28 H 0.111 0.889 29 H 0.153 0.847 30 H 0.166 0.834 31 H 0.432 0.568 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.186 0.814 37 H 0.216 0.784 38 H 0.188 0.812 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.586 -10.794 2.725 28.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.787 3.213 4 H -0.188 1.188 5 H -0.189 1.189 6 H -0.197 1.197 7 C -0.474 4.474 8 H 0.104 0.896 9 O -0.156 6.156 10 C 0.082 3.918 11 C -0.270 4.270 12 C -0.073 4.073 13 C -0.215 4.215 14 C 0.087 3.913 15 N -0.303 5.303 16 C 0.293 3.707 17 O -0.442 6.442 18 C -0.157 4.157 19 C -0.094 4.094 20 C -0.181 4.181 21 C -0.021 4.021 22 N -0.252 5.252 23 C -0.010 4.010 24 N -0.252 5.252 25 C -0.019 4.019 26 C -0.225 4.225 27 H 0.094 0.906 28 H 0.129 0.871 29 H 0.171 0.829 30 H 0.183 0.817 31 H 0.272 0.728 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.203 0.797 37 H 0.232 0.768 38 H 0.204 0.796 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 27.149 -9.860 3.189 29.060 hybrid contribution -1.296 0.707 -0.327 1.512 sum 25.853 -9.153 2.861 27.574 Atomic orbital electron populations 1.69716 1.06606 1.29507 1.50246 1.25199 0.95864 1.01840 0.95693 0.85304 0.78575 0.78031 0.79343 1.18811 1.18891 1.19743 1.20754 0.77931 0.96281 1.52401 0.89574 1.83526 1.21464 1.27606 1.83016 1.19425 0.92492 0.85424 0.94457 1.21353 1.00429 0.93159 1.12090 1.21023 0.94751 0.96386 0.95143 1.20946 0.93178 0.97446 1.09970 1.17313 0.83895 0.92368 0.97679 1.43387 1.04067 1.29312 1.53535 1.21689 0.91478 0.81228 0.76324 1.90804 1.70788 1.32262 1.50317 1.21667 0.87811 1.01607 1.04614 1.20138 0.88429 0.98685 1.02108 1.21599 0.98081 1.00912 0.97490 1.23600 0.87859 0.92505 0.98110 1.68508 1.17478 1.16981 1.22268 1.25463 1.01907 0.88586 0.84995 1.68513 1.05247 1.20382 1.31028 1.23611 0.91713 0.91450 0.95171 1.20237 0.91200 0.98896 1.12121 0.90551 0.87068 0.82890 0.81678 0.72767 0.85653 0.85417 0.90023 0.90227 0.79747 0.76788 0.79557 0.86622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.79 13.96 21.61 0.30 -55.49 16 2 C 0.01 0.75 5.49 84.83 0.47 1.22 16 3 Si 0.96 47.56 28.62 68.60 1.96 49.52 16 4 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.27 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.40 -24.10 9.95 67.92 0.68 -23.42 16 8 H 0.09 5.37 5.43 -2.91 -0.02 5.36 16 9 O -0.25 -14.30 8.58 -22.80 -0.20 -14.50 16 10 C 0.13 6.49 6.64 22.56 0.15 6.64 16 11 C -0.25 -10.96 9.17 22.41 0.21 -10.76 16 12 C -0.05 -1.74 10.03 22.24 0.22 -1.52 16 13 C -0.20 -5.18 9.96 22.43 0.22 -4.96 16 14 C 0.18 5.61 6.30 38.13 0.24 5.85 16 15 N -0.66 -13.17 5.34 -303.56 -1.62 -14.79 16 16 C 0.50 10.93 7.67 87.65 0.67 11.60 16 17 O -0.56 -19.16 13.42 -3.04 -0.04 -19.20 16 18 C -0.12 -1.17 5.68 29.85 0.17 -1.00 16 19 C -0.05 -0.69 4.68 29.85 0.14 -0.55 16 20 C -0.18 -2.09 5.17 -19.69 -0.10 -2.20 16 21 C 0.14 1.87 11.01 84.70 0.93 2.81 16 22 N -0.54 -8.61 10.44 -200.05 -2.09 -10.70 16 23 C 0.28 4.00 12.29 180.88 2.22 6.22 16 24 N -0.54 -8.46 10.44 -200.05 -2.09 -10.54 16 25 C 0.15 1.83 11.01 84.70 0.93 2.77 16 26 C -0.20 -8.61 8.64 22.51 0.19 -8.41 16 27 H 0.28 15.84 8.31 -92.71 -0.77 15.06 16 28 H 0.11 5.31 5.63 -2.91 -0.02 5.30 16 29 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 30 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 31 H 0.43 4.30 8.82 -92.71 -0.82 3.48 16 32 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.13 0.59 8.14 -2.39 -0.02 0.58 16 34 H 0.08 1.21 8.06 -2.39 -0.02 1.19 16 35 H 0.08 1.22 8.06 -2.39 -0.02 1.20 16 36 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.22 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.12 5.28 6.23 -2.91 -0.02 5.27 16 Total: -1.00 -82.27 342.92 3.87 -78.40 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.29 Total: 13.00 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 7.35 Total: -15.71 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -5.49 Total: -91.52 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.24 Total: -33.69 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.96 Total: 49.52 kcal Total: -82.27 3.87 -78.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794230516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.887 kcal (2) G-P(sol) polarization free energy of solvation -82.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds