Wall clock time and date at job start Tue Mar 31 2020 10:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47053 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46943 * 300.00280 * 3 2 1 6 6 H 1.48494 * 109.47051 * 60.00727 * 3 2 1 7 7 C 1.37881 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99956 * 169.33468 * 7 2 1 9 9 C 1.50699 * 119.99749 * 349.33305 * 7 2 1 10 10 C 1.52999 * 115.55186 * 324.15503 * 9 7 2 11 11 O 1.45197 * 109.47416 * 305.87438 * 10 9 7 12 12 C 1.34770 * 117.00166 * 183.79065 * 11 10 9 13 13 O 1.21534 * 120.00177 * 5.36155 * 12 11 10 14 14 C 1.47168 * 120.00101 * 185.36316 * 12 11 10 15 15 C 1.38000 * 126.81736 * 354.42174 * 14 12 11 16 16 N 1.34156 * 107.88952 * 180.29319 * 15 14 12 17 17 H 0.97001 * 125.16077 * 179.71507 * 16 15 14 18 18 N 1.39775 * 109.68597 * 359.72295 * 16 15 14 19 19 C 1.31366 * 109.08626 * 359.97438 * 18 16 15 20 20 C 1.48242 * 126.51622 * 180.02562 * 19 18 16 21 21 C 1.39381 * 119.72969 * 335.02357 * 20 19 18 22 22 C 1.38394 * 119.06893 * 180.27342 * 21 20 19 23 23 C 1.38797 * 118.50948 * 359.46368 * 22 21 20 24 24 C 1.38256 * 119.37341 * 0.51735 * 23 22 21 25 25 N 1.31757 * 120.90084 * 359.74472 * 24 23 22 26 26 C 1.52997 * 117.49746 * 109.83142 * 9 7 2 27 27 C 1.53005 * 117.49786 * 178.48785 * 9 7 2 28 28 H 0.97003 * 120.00025 * 5.02497 * 1 2 3 29 29 H 1.09003 * 109.46963 * 185.87095 * 10 9 7 30 30 H 1.08998 * 109.47004 * 65.87843 * 10 9 7 31 31 H 1.08006 * 126.05370 * 0.02562 * 15 14 12 32 32 H 1.08007 * 120.46957 * 0.02562 * 21 20 19 33 33 H 1.07990 * 120.74537 * 179.70104 * 22 21 20 34 34 H 1.07992 * 120.31457 * 180.26695 * 23 22 21 35 35 H 1.08004 * 119.55429 * 179.72703 * 24 23 22 36 36 H 1.09005 * 117.49675 * 214.99800 * 26 9 7 37 37 H 1.08997 * 117.50099 * 0.02562 * 26 9 7 38 38 H 1.08998 * 117.49881 * 359.97438 * 27 9 7 39 39 H 1.08997 * 117.49816 * 144.97087 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0705 -1.2022 -0.1736 9 6 1.2704 -2.4880 0.2405 10 6 0.1179 -2.4158 1.2442 11 8 0.5993 -1.8562 2.4945 12 6 -0.2777 -1.7967 3.5161 13 8 -1.3826 -2.2891 3.3980 14 6 0.1024 -1.1354 4.7747 15 6 1.3438 -0.6279 5.1001 16 7 1.2684 -0.1170 6.3383 17 1 2.0020 0.3012 6.8156 18 7 -0.0275 -0.2788 6.8364 19 6 -0.7637 -0.8816 5.9306 20 6 -2.1960 -1.2426 6.0557 21 6 -2.7523 -1.4361 7.3189 22 6 -4.0895 -1.7785 7.4195 23 6 -4.8305 -1.9052 6.2527 24 6 -4.2145 -1.6984 5.0324 25 7 -2.9382 -1.3785 4.9642 26 6 1.1169 -3.4443 -0.9439 27 6 2.0853 -3.7821 0.1924 28 1 -0.4850 0.8368 -0.0736 29 1 -0.2731 -3.4178 1.4211 30 1 -0.6736 -1.7825 0.8436 31 1 2.2217 -0.6436 4.4712 32 1 -2.1474 -1.3245 8.2067 33 1 -4.5471 -1.9395 8.3843 34 1 -5.8772 -2.1670 6.2975 35 1 -4.7873 -1.8006 4.1224 36 1 0.1948 -4.0220 -1.0081 37 1 1.5472 -3.1378 -1.8973 38 1 3.1522 -3.6976 -0.0140 39 1 1.8006 -4.5818 0.8761 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810599552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:47 Heat of formation + Delta-G solvation = 67.666547 kcal Electronic energy + Delta-G solvation = -25476.254631 eV Core-core repulsion = 21773.351767 eV Total energy + Delta-G solvation = -3702.902865 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.06381 -39.69445 -38.78534 -36.51908 -34.66664 -32.92962 -32.31084 -32.10317 -30.38179 -30.01115 -26.45267 -25.28967 -24.21531 -23.50191 -22.74160 -21.18355 -20.59218 -19.63730 -19.07881 -17.87485 -16.76531 -16.42495 -16.13403 -15.91746 -15.54638 -15.26908 -14.80176 -14.69917 -14.32853 -13.97252 -13.62843 -13.58928 -13.21987 -12.97377 -12.69180 -11.83088 -11.79862 -11.76969 -11.37749 -11.08747 -10.97072 -10.74369 -10.45440 -10.27621 -10.26392 -9.81464 -9.67229 -9.32176 -9.25908 -9.00774 -8.97411 -8.85939 -8.69770 -8.44436 -8.05626 -5.98723 -4.03392 0.80483 1.39683 1.71310 2.33678 2.62156 3.27328 3.36390 3.39349 3.67573 3.93714 4.11348 4.17522 4.39590 4.60264 4.87471 4.89948 5.04533 5.08050 5.16229 5.29046 5.48825 5.55331 5.67639 5.80466 5.89386 6.06985 6.13905 6.17665 6.29594 6.36029 6.59429 6.70293 6.73054 6.76440 6.91261 7.07721 7.09829 7.31417 7.43638 7.52993 7.79586 7.96383 8.20486 8.41104 8.89307 9.03890 9.56295 11.02707 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.004404 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.662158 B = 6356.356583 C = 7005.600924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.077 3.923 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.484 4.484 8 H 0.061 0.939 9 C 0.050 3.950 10 C 0.121 3.879 11 O -0.331 6.331 12 C 0.523 3.477 13 O -0.492 6.492 14 C -0.234 4.234 15 C 0.127 3.873 16 N -0.465 5.465 17 H 0.444 0.556 18 N -0.281 5.281 19 C 0.170 3.830 20 C 0.191 3.809 21 C -0.143 4.143 22 C -0.087 4.087 23 C -0.168 4.168 24 C 0.105 3.895 25 N -0.409 5.409 26 C -0.194 4.194 27 C -0.210 4.210 28 H 0.262 0.738 29 H 0.024 0.976 30 H 0.111 0.889 31 H 0.202 0.798 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.159 0.841 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 -1.625 14.717 15.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.126 4.126 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.521 4.521 8 H 0.079 0.921 9 C 0.050 3.950 10 C 0.048 3.952 11 O -0.247 6.247 12 C 0.366 3.634 13 O -0.380 6.380 14 C -0.247 4.247 15 C -0.022 4.022 16 N -0.172 5.172 17 H 0.289 0.711 18 N -0.104 5.104 19 C 0.001 3.999 20 C 0.052 3.948 21 C -0.165 4.165 22 C -0.113 4.113 23 C -0.189 4.189 24 C -0.054 4.054 25 N -0.118 5.118 26 C -0.232 4.232 27 C -0.248 4.248 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.129 0.871 31 H 0.218 0.782 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.176 0.824 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.687 -1.023 15.017 15.496 hybrid contribution 0.450 0.525 0.081 0.696 sum -3.237 -0.499 15.097 15.448 Atomic orbital electron populations 1.69795 1.06009 1.26778 1.48869 1.24909 0.94694 0.98954 0.94067 0.86543 0.80152 0.83700 0.77644 1.19698 1.21132 1.20888 1.20427 0.93890 0.88834 1.48934 0.92071 1.18898 0.94062 0.89443 0.92616 1.22709 0.98509 0.95176 0.78850 1.86496 1.41717 1.75224 1.21239 1.19684 0.83112 0.77568 0.83066 1.90822 1.21269 1.43531 1.82421 1.20581 0.93193 1.14794 0.96150 1.23366 0.99974 0.92240 0.86633 1.45874 1.10218 1.48086 1.13022 0.71083 1.77169 0.89502 1.22351 1.21342 1.21278 0.92140 0.95949 0.90513 1.18372 0.89615 0.97623 0.89142 1.22048 0.96069 1.00391 0.97973 1.21442 0.93589 0.97233 0.98992 1.22286 1.01352 1.01459 0.93810 1.22839 0.90222 0.94764 0.97583 1.67888 1.05628 1.07952 1.30329 1.22955 0.99305 1.06357 0.94561 1.22950 0.96876 1.02012 1.02933 0.92758 0.95725 0.87113 0.78167 0.84584 0.84775 0.84809 0.82407 0.91519 0.89900 0.90463 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.57 10.79 55.43 0.60 -23.97 16 2 C 0.08 2.07 5.21 -17.82 -0.09 1.98 16 3 Si 0.89 20.76 29.55 -169.99 -5.02 15.74 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.48 -12.99 8.77 -34.44 -0.30 -13.30 16 8 H 0.06 1.63 7.84 -52.49 -0.41 1.22 16 9 C 0.05 1.26 2.11 -155.66 -0.33 0.93 16 10 C 0.12 3.04 4.64 37.16 0.17 3.21 16 11 O -0.33 -8.02 9.75 -40.68 -0.40 -8.42 16 12 C 0.52 11.90 7.93 34.36 0.27 12.17 16 13 O -0.49 -11.93 13.53 -19.29 -0.26 -12.19 16 14 C -0.23 -4.45 6.30 -102.96 -0.65 -5.10 16 15 C 0.13 1.86 11.85 -16.62 -0.20 1.66 16 16 N -0.47 -5.68 7.20 30.82 0.22 -5.46 16 17 H 0.44 3.41 8.96 -182.84 -1.64 1.77 16 18 N -0.28 -4.24 12.53 34.58 0.43 -3.81 16 19 C 0.17 2.99 7.11 -80.56 -0.57 2.42 16 20 C 0.19 3.26 6.60 -82.96 -0.55 2.71 16 21 C -0.14 -1.89 9.75 -39.10 -0.38 -2.27 16 22 C -0.09 -0.93 10.17 -39.32 -0.40 -1.33 16 23 C -0.17 -1.86 10.11 -39.37 -0.40 -2.26 16 24 C 0.10 1.52 11.17 -17.58 -0.20 1.32 16 25 N -0.41 -7.58 7.21 -9.79 -0.07 -7.65 16 26 C -0.19 -4.38 9.96 -26.70 -0.27 -4.65 16 27 C -0.21 -4.60 9.92 -26.69 -0.26 -4.86 16 28 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 29 H 0.02 0.59 7.95 -51.93 -0.41 0.18 16 30 H 0.11 3.09 6.02 -51.93 -0.31 2.78 16 31 H 0.20 2.48 8.06 -52.48 -0.42 2.05 16 32 H 0.14 1.55 8.04 -52.48 -0.42 1.13 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.16 1.98 8.06 -52.48 -0.42 1.56 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.86 8.14 -51.93 -0.42 1.43 16 38 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 345.39 15.07 5.21 5.21 Total: -1.00 -33.78 345.39 -9.16 -42.94 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.72 Total: 4.97 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -4.15 Total: -7.36 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 1.18 Total: -40.89 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.66 Total: -20.61 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.78 -9.16 -42.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810599552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.609 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds