Wall clock time and date at job start Tue Mar 31 2020 10:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47053 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46943 * 300.00280 * 3 2 1 6 6 H 1.48494 * 109.47051 * 60.00727 * 3 2 1 7 7 C 1.37881 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99956 * 169.33468 * 7 2 1 9 9 C 1.50699 * 119.99749 * 349.33305 * 7 2 1 10 10 C 1.52999 * 115.55186 * 324.15503 * 9 7 2 11 11 O 1.45197 * 109.47416 * 305.87438 * 10 9 7 12 12 C 1.34770 * 117.00166 * 183.79065 * 11 10 9 13 13 O 1.21534 * 120.00177 * 5.36155 * 12 11 10 14 14 C 1.47168 * 120.00101 * 185.36316 * 12 11 10 15 15 C 1.38000 * 126.81736 * 354.42174 * 14 12 11 16 16 N 1.34156 * 107.88952 * 180.29319 * 15 14 12 17 17 H 0.97001 * 125.16077 * 179.71507 * 16 15 14 18 18 N 1.39775 * 109.68597 * 359.72295 * 16 15 14 19 19 C 1.31366 * 109.08626 * 359.97438 * 18 16 15 20 20 C 1.48242 * 126.51622 * 180.02562 * 19 18 16 21 21 C 1.39381 * 119.72969 * 335.02357 * 20 19 18 22 22 C 1.38394 * 119.06893 * 180.27342 * 21 20 19 23 23 C 1.38797 * 118.50948 * 359.46368 * 22 21 20 24 24 C 1.38256 * 119.37341 * 0.51735 * 23 22 21 25 25 N 1.31757 * 120.90084 * 359.74472 * 24 23 22 26 26 C 1.52997 * 117.49746 * 109.83142 * 9 7 2 27 27 C 1.53005 * 117.49786 * 178.48785 * 9 7 2 28 28 H 0.97003 * 120.00025 * 5.02497 * 1 2 3 29 29 H 1.09003 * 109.46963 * 185.87095 * 10 9 7 30 30 H 1.08998 * 109.47004 * 65.87843 * 10 9 7 31 31 H 1.08006 * 126.05370 * 0.02562 * 15 14 12 32 32 H 1.08007 * 120.46957 * 0.02562 * 21 20 19 33 33 H 1.07990 * 120.74537 * 179.70104 * 22 21 20 34 34 H 1.07992 * 120.31457 * 180.26695 * 23 22 21 35 35 H 1.08004 * 119.55429 * 179.72703 * 24 23 22 36 36 H 1.09005 * 117.49675 * 214.99800 * 26 9 7 37 37 H 1.08997 * 117.50099 * 0.02562 * 26 9 7 38 38 H 1.08998 * 117.49881 * 359.97438 * 27 9 7 39 39 H 1.08997 * 117.49816 * 144.97087 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0705 -1.2022 -0.1736 9 6 1.2704 -2.4880 0.2405 10 6 0.1179 -2.4158 1.2442 11 8 0.5993 -1.8562 2.4945 12 6 -0.2777 -1.7967 3.5161 13 8 -1.3826 -2.2891 3.3980 14 6 0.1024 -1.1354 4.7747 15 6 1.3438 -0.6279 5.1001 16 7 1.2684 -0.1170 6.3383 17 1 2.0020 0.3012 6.8156 18 7 -0.0275 -0.2788 6.8364 19 6 -0.7637 -0.8816 5.9306 20 6 -2.1960 -1.2426 6.0557 21 6 -2.7523 -1.4361 7.3189 22 6 -4.0895 -1.7785 7.4195 23 6 -4.8305 -1.9052 6.2527 24 6 -4.2145 -1.6984 5.0324 25 7 -2.9382 -1.3785 4.9642 26 6 1.1169 -3.4443 -0.9439 27 6 2.0853 -3.7821 0.1924 28 1 -0.4850 0.8368 -0.0736 29 1 -0.2731 -3.4178 1.4211 30 1 -0.6736 -1.7825 0.8436 31 1 2.2217 -0.6436 4.4712 32 1 -2.1474 -1.3245 8.2067 33 1 -4.5471 -1.9395 8.3843 34 1 -5.8772 -2.1670 6.2975 35 1 -4.7873 -1.8006 4.1224 36 1 0.1948 -4.0220 -1.0081 37 1 1.5472 -3.1378 -1.8973 38 1 3.1522 -3.6976 -0.0140 39 1 1.8006 -4.5818 0.8761 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810599552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:46 Heat of formation + Delta-G solvation = 47.163967 kcal Electronic energy + Delta-G solvation = -25477.143690 eV Core-core repulsion = 21773.351767 eV Total energy + Delta-G solvation = -3703.791923 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.27696 -40.74103 -40.53931 -38.36716 -36.47079 -34.13312 -34.02867 -33.34115 -31.71176 -31.08889 -28.31833 -27.31071 -25.30123 -24.62943 -24.10876 -22.96261 -21.80203 -21.04023 -20.96459 -19.23396 -18.33726 -17.86725 -17.68360 -17.08368 -16.93979 -16.53492 -16.47137 -16.44031 -15.81043 -15.38893 -15.02759 -14.83172 -14.66539 -14.23371 -13.84847 -13.69090 -13.58131 -13.25443 -12.84901 -12.69618 -12.68998 -12.33233 -12.25774 -12.08693 -11.57870 -11.33648 -11.19530 -11.06520 -10.98885 -10.73079 -10.60652 -10.14485 -10.06279 -10.00405 -9.61367 -8.01131 -6.12320 -0.26462 0.42219 0.43093 1.11175 1.42675 1.45914 1.54953 1.57105 2.08061 2.39881 2.46388 2.95926 3.00609 3.10561 3.48606 3.64585 3.81739 4.05528 4.10885 4.18730 4.21767 4.27636 4.36798 4.38297 4.49405 4.63445 4.68476 4.82658 4.86813 4.94256 4.98132 5.10413 5.19024 5.24696 5.26793 5.47372 5.55605 5.78314 5.88378 6.00088 6.07652 6.31590 6.39386 6.85384 7.16188 7.27684 7.49974 8.98630 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.004404 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.662158 B = 6356.356583 C = 7005.600924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.033 3.967 3 Si 0.951 3.049 4 H -0.260 1.260 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.495 4.495 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.133 3.867 11 O -0.340 6.340 12 C 0.516 3.484 13 O -0.519 6.519 14 C -0.288 4.288 15 C 0.155 3.845 16 N -0.437 5.437 17 H 0.467 0.533 18 N -0.278 5.278 19 C 0.160 3.840 20 C 0.151 3.849 21 C -0.140 4.140 22 C -0.078 4.078 23 C -0.149 4.149 24 C 0.077 3.923 25 N -0.465 5.465 26 C -0.189 4.189 27 C -0.185 4.185 28 H 0.258 0.742 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.226 0.774 32 H 0.153 0.847 33 H 0.180 0.820 34 H 0.175 0.825 35 H 0.161 0.839 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.992 -1.492 16.994 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.167 4.167 3 Si 0.777 3.223 4 H -0.183 1.183 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.533 4.533 8 H 0.078 0.922 9 C 0.013 3.987 10 C 0.059 3.941 11 O -0.256 6.256 12 C 0.361 3.639 13 O -0.408 6.408 14 C -0.301 4.301 15 C 0.004 3.996 16 N -0.146 5.146 17 H 0.317 0.683 18 N -0.101 5.101 19 C -0.008 4.008 20 C 0.013 3.987 21 C -0.161 4.161 22 C -0.103 4.103 23 C -0.169 4.169 24 C -0.082 4.082 25 N -0.175 5.175 26 C -0.227 4.227 27 C -0.222 4.222 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.242 0.758 32 H 0.171 0.829 33 H 0.198 0.802 34 H 0.193 0.807 35 H 0.178 0.822 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.995 -0.880 17.332 17.611 hybrid contribution 0.200 0.449 -0.562 0.747 sum -2.795 -0.431 16.770 17.007 Atomic orbital electron populations 1.69972 1.07397 1.27018 1.50081 1.25598 0.95281 1.01979 0.93876 0.85614 0.79552 0.79821 0.77329 1.18346 1.21174 1.20913 1.20660 0.93861 0.89947 1.48784 0.92244 1.19019 0.95286 0.90340 0.94101 1.22376 0.97920 0.94228 0.79579 1.86487 1.42304 1.75566 1.21237 1.20340 0.82688 0.77242 0.83674 1.90790 1.22195 1.44872 1.82983 1.20567 0.95753 1.18126 0.95648 1.23591 0.99082 0.89870 0.87085 1.45903 1.10110 1.46416 1.12195 0.68318 1.77126 0.90232 1.21905 1.20824 1.21569 0.92954 0.96046 0.90258 1.18625 0.89653 1.00072 0.90370 1.22287 0.97432 0.99483 0.96906 1.21982 0.92444 0.95107 1.00771 1.22667 1.03054 0.98790 0.92390 1.23126 0.89587 0.95881 0.99593 1.67713 1.07585 1.09964 1.32236 1.22964 1.00162 1.05373 0.94242 1.22958 0.97116 1.00144 1.02009 0.93297 0.95773 0.90544 0.75774 0.82921 0.80248 0.80749 0.82179 0.90511 0.89882 0.89367 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.48 10.79 21.45 0.23 -52.24 16 2 C 0.03 1.79 5.21 84.66 0.44 2.23 16 3 Si 0.95 42.79 29.55 68.60 2.03 44.82 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.50 -26.73 8.77 25.60 0.22 -26.51 16 8 H 0.06 3.14 7.84 -2.91 -0.02 3.12 16 9 C 0.01 0.65 2.11 -52.93 -0.11 0.54 16 10 C 0.13 6.95 4.64 71.98 0.33 7.28 16 11 O -0.34 -17.05 9.75 -56.81 -0.55 -17.61 16 12 C 0.52 24.62 7.93 70.17 0.56 25.17 16 13 O -0.52 -26.82 13.53 19.72 0.27 -26.55 16 14 C -0.29 -11.19 6.30 -18.79 -0.12 -11.31 16 15 C 0.16 4.38 11.85 84.28 1.00 5.38 16 16 N -0.44 -9.80 7.20 -56.40 -0.41 -10.21 16 17 H 0.47 5.75 8.96 -213.53 -1.91 3.84 16 18 N -0.28 -8.09 12.53 -44.52 -0.56 -8.65 16 19 C 0.16 5.72 7.11 44.07 0.31 6.04 16 20 C 0.15 5.25 6.60 41.95 0.28 5.53 16 21 C -0.14 -3.50 9.75 22.58 0.22 -3.28 16 22 C -0.08 -1.43 10.17 22.44 0.23 -1.20 16 23 C -0.15 -2.97 10.11 22.41 0.23 -2.74 16 24 C 0.08 2.28 11.17 84.71 0.95 3.23 16 25 N -0.47 -18.12 7.21 -184.89 -1.33 -19.45 16 26 C -0.19 -8.51 9.96 30.62 0.30 -8.20 16 27 C -0.19 -7.86 9.92 30.62 0.30 -7.56 16 28 H 0.26 14.47 8.32 -92.71 -0.77 13.70 16 29 H 0.02 1.22 7.95 -2.39 -0.02 1.20 16 30 H 0.08 4.53 6.02 -2.39 -0.01 4.51 16 31 H 0.23 5.12 8.06 -2.91 -0.02 5.10 16 32 H 0.15 3.16 8.04 -2.91 -0.02 3.14 16 33 H 0.18 1.68 8.06 -2.92 -0.02 1.65 16 34 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.16 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 37 H 0.08 3.68 8.14 -2.39 -0.02 3.66 16 38 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 39 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -77.47 345.39 4.00 -73.47 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -0.82 Total: 21.84 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 5.14 Total: -5.42 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -2.07 Total: -90.55 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -0.29 Total: -44.16 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -77.47 4.00 -73.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810599552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.636 kcal (2) G-P(sol) polarization free energy of solvation -77.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds