Wall clock time and date at job start Tue Mar 31 2020 10:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99933 * 2 1 4 4 C 1.52995 * 109.47236 * 184.73402 * 3 2 1 5 5 N 1.46902 * 109.46811 * 69.32637 * 4 3 2 6 6 C 1.46898 * 111.00240 * 286.24238 * 5 4 3 7 7 C 1.50704 * 109.47203 * 302.95563 * 6 5 4 8 8 H 1.08000 * 119.99962 * 4.33789 * 7 6 5 9 9 C 1.37881 * 120.00132 * 184.34491 * 7 6 5 10 10 N 1.31519 * 119.99758 * 354.85233 * 9 7 6 11 11 Si 1.86800 * 119.99992 * 174.85730 * 9 7 6 12 12 H 1.48500 * 109.46895 * 4.99618 * 11 9 7 13 13 H 1.48500 * 109.46858 * 124.99937 * 11 9 7 14 14 H 1.48499 * 109.46970 * 244.99601 * 11 9 7 15 15 C 1.46905 * 110.99701 * 162.29066 * 5 4 3 16 16 C 1.50707 * 109.46577 * 189.99988 * 15 5 4 17 17 C 1.38169 * 120.01996 * 259.99374 * 16 15 5 18 18 C 1.38340 * 120.03960 * 180.02562 * 17 16 15 19 19 Cl 1.73600 * 119.95717 * 179.97438 * 18 17 16 20 20 C 1.38389 * 120.08521 * 0.02562 * 18 17 16 21 21 C 1.50702 * 119.97494 * 179.97438 * 20 18 17 22 22 C 1.38119 * 120.04396 * 359.97438 * 20 18 17 23 23 C 1.38698 * 120.01846 * 79.72467 * 16 15 5 24 24 O 1.35914 * 120.04690 * 0.02562 * 23 16 15 25 25 H 1.09006 * 109.47519 * 304.94251 * 1 2 3 26 26 H 1.09007 * 109.47518 * 64.93981 * 1 2 3 27 27 H 1.09004 * 109.47407 * 184.94112 * 1 2 3 28 28 H 1.08999 * 109.46765 * 64.73742 * 3 2 1 29 29 H 1.08995 * 109.47381 * 304.74138 * 3 2 1 30 30 H 1.09000 * 109.47267 * 309.32870 * 4 3 2 31 31 H 1.08993 * 109.47417 * 189.32879 * 4 3 2 32 32 H 1.09004 * 109.47453 * 62.94983 * 6 5 4 33 33 H 1.08998 * 109.47547 * 182.94977 * 6 5 4 34 34 H 0.96998 * 119.99624 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47373 * 70.00367 * 15 5 4 36 36 H 1.08995 * 109.47041 * 309.99620 * 15 5 4 37 37 H 1.07997 * 119.97519 * 359.97438 * 17 16 15 38 38 H 1.08994 * 109.47220 * 90.00078 * 21 20 18 39 39 H 1.09004 * 109.47075 * 210.00003 * 21 20 18 40 40 H 1.09004 * 109.47175 * 329.99666 * 21 20 18 41 41 H 1.08003 * 120.02145 * 180.02562 * 22 20 18 42 42 H 0.96699 * 114.00449 * 89.99748 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5309 1.1867 -0.1190 5 7 3.8807 0.7050 -1.4620 6 6 3.5705 -0.7236 -1.6063 7 6 4.2989 -1.5056 -0.5437 8 1 4.8729 -0.9873 0.2102 9 6 4.2327 -2.8828 -0.5340 10 7 3.4539 -3.5097 -1.3885 11 14 5.2491 -3.8582 0.6928 12 1 5.9420 -2.9234 1.6155 13 1 4.3576 -4.7539 1.4728 14 1 6.2554 -4.6725 -0.0347 15 6 5.2935 0.9701 -1.7649 16 6 5.5555 0.6917 -3.2227 17 6 6.1407 -0.5003 -3.6045 18 6 6.3818 -0.7561 -4.9425 19 17 7.1177 -2.2541 -5.4198 20 6 6.0380 0.1812 -5.9009 21 6 6.3023 -0.0997 -7.3577 22 6 5.4529 1.3739 -5.5231 23 6 5.2042 1.6295 -4.1823 24 8 4.6240 2.8006 -3.8090 25 1 -0.3634 0.5886 0.8424 26 1 -0.3634 0.4353 -0.9310 27 1 -0.3634 -1.0239 0.0885 28 1 1.7573 1.8157 0.9294 29 1 1.6230 1.8756 -0.8444 30 1 3.8999 0.4829 0.6270 31 1 3.9857 2.1633 0.0466 32 1 2.4967 -0.8752 -1.4969 33 1 3.8873 -1.0666 -2.5912 34 1 3.4070 -4.4785 -1.3815 35 1 5.9237 0.3249 -1.1528 36 1 5.5221 2.0134 -1.5475 37 1 6.4107 -1.2323 -2.8578 38 1 5.4362 -0.5964 -7.7949 39 1 6.4858 0.8386 -7.8812 40 1 7.1763 -0.7445 -7.4507 41 1 5.1844 2.1050 -6.2714 42 1 5.2538 3.5119 -3.6291 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824714463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:29 Heat of formation + Delta-G solvation = -63.931445 kcal Electronic energy + Delta-G solvation = -24840.328716 eV Core-core repulsion = 21232.826828 eV Total energy + Delta-G solvation = -3607.501888 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.78483 -37.64612 -36.92774 -36.02083 -35.60881 -32.74374 -32.20724 -29.46650 -29.32946 -27.86096 -26.30828 -25.31634 -23.74402 -22.48193 -22.37247 -20.74205 -19.56281 -17.62279 -16.55071 -16.05099 -15.95643 -15.63419 -15.45388 -14.89640 -14.59099 -14.11899 -13.97873 -13.71028 -13.54190 -13.52535 -12.80112 -12.64458 -12.33534 -12.13733 -11.98839 -11.82839 -11.48991 -11.26550 -11.04966 -10.91136 -10.83618 -10.78188 -10.62354 -10.54454 -10.45023 -10.14611 -9.84139 -9.74772 -9.42753 -8.86065 -8.42593 -8.18783 -8.01056 -7.03185 -5.85580 -3.90344 1.40906 1.57821 2.50913 3.33877 3.42405 3.43830 3.78480 4.44648 4.52461 4.56706 4.98386 5.04096 5.18882 5.36015 5.45332 5.53964 5.68775 5.68937 5.75885 5.80622 5.87506 5.93897 5.96954 6.04052 6.06121 6.15806 6.21082 6.33042 6.36112 6.46261 6.48666 6.61485 6.80696 6.87575 7.06518 7.43461 7.78902 7.95178 7.96129 8.16143 8.19307 8.44333 8.50577 9.18195 9.72313 11.19997 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.005932 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.574451 B = 4718.643600 C = 6476.066363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.353 6.353 3 C 0.073 3.927 4 C 0.057 3.943 5 N -0.527 5.527 6 C 0.181 3.819 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.069 3.931 10 N -0.885 5.885 11 Si 0.877 3.123 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.104 3.896 16 C -0.076 4.076 17 C -0.064 4.064 18 C -0.046 4.046 19 Cl -0.076 7.076 20 C -0.073 4.073 21 C -0.114 4.114 22 C -0.147 4.147 23 C 0.129 3.871 24 O -0.482 6.482 25 H 0.027 0.973 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.026 0.974 34 H 0.257 0.743 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.143 0.857 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.129 0.871 42 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.902 11.346 -6.284 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C -0.004 4.004 4 C -0.071 4.071 5 N -0.251 5.251 6 C 0.055 3.945 7 C -0.572 4.572 8 H 0.070 0.930 9 C -0.134 4.134 10 N -0.524 5.524 11 Si 0.705 3.295 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.211 1.211 15 C -0.024 4.024 16 C -0.077 4.077 17 C -0.083 4.083 18 C -0.073 4.073 19 Cl -0.047 7.047 20 C -0.074 4.074 21 C -0.171 4.171 22 C -0.166 4.166 23 C 0.084 3.916 24 O -0.291 6.291 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.161 0.839 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.147 0.853 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 3.197 10.812 -6.782 13.157 hybrid contribution 1.160 -0.887 1.362 1.997 sum 4.357 9.925 -5.420 12.119 Atomic orbital electron populations 1.22624 0.83368 1.01933 0.98547 1.88320 1.17483 1.26583 1.94748 1.22447 0.94603 0.85257 0.98123 1.21989 0.93397 0.98880 0.92870 1.62649 1.15685 1.22207 1.24578 1.19995 0.98663 0.79838 0.95956 1.21624 1.30655 0.91689 1.13243 0.93007 1.24844 0.95261 0.97783 0.95462 1.69971 1.37519 1.08205 1.36725 0.86795 0.80473 0.80473 0.81756 1.20091 1.21253 1.21121 1.20709 0.92345 0.99159 0.90159 1.20127 0.97217 0.93723 0.96675 1.21058 0.96586 0.96501 0.94161 1.20724 1.03813 0.88600 0.94119 1.98333 1.81405 1.32811 1.92160 1.19465 0.99199 0.93211 0.95507 1.20812 1.02653 1.02243 0.91360 1.21076 1.02037 0.97782 0.95724 1.18257 0.94721 0.87858 0.90788 1.84923 1.34835 1.19680 1.89651 0.95465 0.94928 0.90278 0.94734 0.93578 0.92183 0.92104 0.92493 0.95546 0.93267 0.93152 0.92193 0.83925 0.90871 0.91549 0.91026 0.85271 0.76580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.66 16 2 O -0.35 -7.54 7.95 -35.23 -0.28 -7.82 16 3 C 0.07 1.33 6.20 37.16 0.23 1.56 16 4 C 0.06 1.10 5.32 -3.83 -0.02 1.08 16 5 N -0.53 -11.19 4.65 -237.51 -1.10 -12.29 16 6 C 0.18 4.65 4.53 -4.97 -0.02 4.63 16 7 C -0.53 -14.44 7.35 -34.44 -0.25 -14.69 16 8 H 0.05 1.40 5.95 -52.49 -0.31 1.09 16 9 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 10 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 11 Si 0.88 21.71 29.54 -169.99 -5.02 16.69 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 14 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 15 C 0.10 1.95 4.60 -4.97 -0.02 1.93 16 16 C -0.08 -1.38 4.60 -104.47 -0.48 -1.86 16 17 C -0.06 -1.21 8.32 -39.57 -0.33 -1.54 16 18 C -0.05 -0.79 6.31 -39.49 -0.25 -1.04 16 19 Cl -0.08 -1.23 27.29 -51.86 -1.41 -2.65 16 20 C -0.07 -1.08 5.88 -104.61 -0.62 -1.70 16 21 C -0.11 -1.33 9.61 36.01 0.35 -0.99 16 22 C -0.15 -2.14 9.64 -39.44 -0.38 -2.52 16 23 C 0.13 2.07 6.68 -39.22 -0.26 1.81 16 24 O -0.48 -6.90 12.74 -19.47 -0.25 -7.14 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.31 5.85 -51.93 -0.30 1.00 16 31 H 0.06 0.98 7.77 -51.93 -0.40 0.57 16 32 H 0.06 1.64 5.72 -51.93 -0.30 1.34 16 33 H 0.03 0.75 6.26 -51.93 -0.33 0.42 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.05 1.02 6.73 -51.93 -0.35 0.67 16 36 H 0.06 0.95 7.56 -51.93 -0.39 0.56 16 37 H 0.14 2.96 8.04 -52.49 -0.42 2.54 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 40 H 0.07 0.82 6.90 -51.93 -0.36 0.46 16 41 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 42 H 0.38 3.38 9.06 45.56 0.41 3.79 16 LS Contribution 355.44 15.07 5.36 5.36 Total: -1.00 -32.07 355.44 -8.28 -40.36 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.26 Total: 2.96 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -1.04 Total: -9.84 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.37 Total: -37.90 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.53 Total: -14.97 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.41 Total: -2.65 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.07 -8.28 -40.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824714463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.575 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds