Wall clock time and date at job start Tue Mar 31 2020 10:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99933 * 2 1 4 4 C 1.52995 * 109.47236 * 184.73402 * 3 2 1 5 5 N 1.46902 * 109.46811 * 69.32637 * 4 3 2 6 6 C 1.46898 * 111.00240 * 286.24238 * 5 4 3 7 7 C 1.50704 * 109.47203 * 302.95563 * 6 5 4 8 8 H 1.08000 * 119.99962 * 4.33789 * 7 6 5 9 9 C 1.37881 * 120.00132 * 184.34491 * 7 6 5 10 10 N 1.31519 * 119.99758 * 354.85233 * 9 7 6 11 11 Si 1.86800 * 119.99992 * 174.85730 * 9 7 6 12 12 H 1.48500 * 109.46895 * 4.99618 * 11 9 7 13 13 H 1.48500 * 109.46858 * 124.99937 * 11 9 7 14 14 H 1.48499 * 109.46970 * 244.99601 * 11 9 7 15 15 C 1.46905 * 110.99701 * 162.29066 * 5 4 3 16 16 C 1.50707 * 109.46577 * 189.99988 * 15 5 4 17 17 C 1.38169 * 120.01996 * 259.99374 * 16 15 5 18 18 C 1.38340 * 120.03960 * 180.02562 * 17 16 15 19 19 Cl 1.73600 * 119.95717 * 179.97438 * 18 17 16 20 20 C 1.38389 * 120.08521 * 0.02562 * 18 17 16 21 21 C 1.50702 * 119.97494 * 179.97438 * 20 18 17 22 22 C 1.38119 * 120.04396 * 359.97438 * 20 18 17 23 23 C 1.38698 * 120.01846 * 79.72467 * 16 15 5 24 24 O 1.35914 * 120.04690 * 0.02562 * 23 16 15 25 25 H 1.09006 * 109.47519 * 304.94251 * 1 2 3 26 26 H 1.09007 * 109.47518 * 64.93981 * 1 2 3 27 27 H 1.09004 * 109.47407 * 184.94112 * 1 2 3 28 28 H 1.08999 * 109.46765 * 64.73742 * 3 2 1 29 29 H 1.08995 * 109.47381 * 304.74138 * 3 2 1 30 30 H 1.09000 * 109.47267 * 309.32870 * 4 3 2 31 31 H 1.08993 * 109.47417 * 189.32879 * 4 3 2 32 32 H 1.09004 * 109.47453 * 62.94983 * 6 5 4 33 33 H 1.08998 * 109.47547 * 182.94977 * 6 5 4 34 34 H 0.96998 * 119.99624 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47373 * 70.00367 * 15 5 4 36 36 H 1.08995 * 109.47041 * 309.99620 * 15 5 4 37 37 H 1.07997 * 119.97519 * 359.97438 * 17 16 15 38 38 H 1.08994 * 109.47220 * 90.00078 * 21 20 18 39 39 H 1.09004 * 109.47075 * 210.00003 * 21 20 18 40 40 H 1.09004 * 109.47175 * 329.99666 * 21 20 18 41 41 H 1.08003 * 120.02145 * 180.02562 * 22 20 18 42 42 H 0.96699 * 114.00449 * 89.99748 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5309 1.1867 -0.1190 5 7 3.8807 0.7050 -1.4620 6 6 3.5705 -0.7236 -1.6063 7 6 4.2989 -1.5056 -0.5437 8 1 4.8729 -0.9873 0.2102 9 6 4.2327 -2.8828 -0.5340 10 7 3.4539 -3.5097 -1.3885 11 14 5.2491 -3.8582 0.6928 12 1 5.9420 -2.9234 1.6155 13 1 4.3576 -4.7539 1.4728 14 1 6.2554 -4.6725 -0.0347 15 6 5.2935 0.9701 -1.7649 16 6 5.5555 0.6917 -3.2227 17 6 6.1407 -0.5003 -3.6045 18 6 6.3818 -0.7561 -4.9425 19 17 7.1177 -2.2541 -5.4198 20 6 6.0380 0.1812 -5.9009 21 6 6.3023 -0.0997 -7.3577 22 6 5.4529 1.3739 -5.5231 23 6 5.2042 1.6295 -4.1823 24 8 4.6240 2.8006 -3.8090 25 1 -0.3634 0.5886 0.8424 26 1 -0.3634 0.4353 -0.9310 27 1 -0.3634 -1.0239 0.0885 28 1 1.7573 1.8157 0.9294 29 1 1.6230 1.8756 -0.8444 30 1 3.8999 0.4829 0.6270 31 1 3.9857 2.1633 0.0466 32 1 2.4967 -0.8752 -1.4969 33 1 3.8873 -1.0666 -2.5912 34 1 3.4070 -4.4785 -1.3815 35 1 5.9237 0.3249 -1.1528 36 1 5.5221 2.0134 -1.5475 37 1 6.4107 -1.2323 -2.8578 38 1 5.4362 -0.5964 -7.7949 39 1 6.4858 0.8386 -7.8812 40 1 7.1763 -0.7445 -7.4507 41 1 5.1844 2.1050 -6.2714 42 1 5.2538 3.5119 -3.6291 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824714463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:28 Heat of formation + Delta-G solvation = -86.580605 kcal Electronic energy + Delta-G solvation = -24841.310857 eV Core-core repulsion = 21232.826828 eV Total energy + Delta-G solvation = -3608.484029 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05466 -39.18558 -38.13418 -37.56015 -36.88423 -34.53279 -33.81444 -30.86739 -30.57987 -29.54321 -27.84444 -26.78422 -25.44712 -23.98397 -23.69504 -22.07559 -21.25472 -18.78489 -18.50868 -17.43894 -17.36752 -17.08688 -16.95574 -16.51145 -16.11843 -15.63712 -15.45377 -15.18431 -14.97620 -14.69846 -14.46837 -13.89968 -13.76696 -13.48875 -13.26169 -13.18369 -12.98307 -12.83701 -12.61973 -12.55829 -12.47175 -12.32575 -12.24075 -11.99051 -11.84649 -11.82170 -11.52961 -11.44126 -11.18399 -10.55004 -10.17906 -9.69982 -9.27238 -8.84049 -8.00321 -6.13441 0.15889 0.30536 1.21954 1.34288 1.36234 1.45448 2.43058 2.52604 3.18078 3.25698 3.33467 3.57423 3.84120 3.87660 4.12429 4.32801 4.37141 4.48589 4.55413 4.58420 4.60546 4.62292 4.71604 4.77890 4.81159 4.85798 4.91476 4.96170 4.97554 5.19871 5.22873 5.24743 5.41562 5.46456 5.55896 5.64773 5.81839 6.02390 6.23093 6.39992 6.55872 6.71834 7.00956 7.06613 7.52800 9.02099 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.005932 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.574451 B = 4718.643600 C = 6476.066363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.400 6.400 3 C 0.073 3.927 4 C 0.055 3.945 5 N -0.527 5.527 6 C 0.205 3.795 7 C -0.525 4.525 8 H 0.050 0.950 9 C 0.016 3.984 10 N -0.922 5.922 11 Si 0.937 3.063 12 H -0.267 1.267 13 H -0.285 1.285 14 H -0.283 1.283 15 C 0.108 3.892 16 C -0.100 4.100 17 C -0.085 4.085 18 C -0.064 4.064 19 Cl -0.077 7.077 20 C -0.067 4.067 21 C -0.113 4.113 22 C -0.141 4.141 23 C 0.138 3.862 24 O -0.489 6.489 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.030 0.970 31 H 0.100 0.900 32 H 0.027 0.973 33 H -0.005 1.005 34 H 0.257 0.743 35 H 0.025 0.975 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.164 0.836 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 13.845 -6.856 15.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.319 6.319 3 C -0.004 4.004 4 C -0.073 4.073 5 N -0.250 5.250 6 C 0.078 3.922 7 C -0.564 4.564 8 H 0.068 0.932 9 C -0.183 4.183 10 N -0.563 5.563 11 Si 0.764 3.236 12 H -0.191 1.191 13 H -0.211 1.211 14 H -0.209 1.209 15 C -0.020 4.020 16 C -0.101 4.101 17 C -0.105 4.105 18 C -0.090 4.090 19 Cl -0.048 7.048 20 C -0.068 4.068 21 C -0.169 4.169 22 C -0.160 4.160 23 C 0.092 3.908 24 O -0.301 6.301 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.045 0.955 33 H 0.013 0.987 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.182 0.818 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.454 13.351 -7.336 15.621 hybrid contribution 1.072 -1.542 1.515 2.413 sum 4.526 11.810 -5.821 13.922 Atomic orbital electron populations 1.22736 0.81431 1.02249 1.00203 1.88247 1.19897 1.28684 1.95104 1.22561 0.93555 0.84400 0.99872 1.22140 0.94701 0.99829 0.90677 1.62565 1.17474 1.18963 1.25982 1.19474 0.96338 0.82597 0.93770 1.21830 1.29692 0.91891 1.13001 0.93187 1.25579 0.96398 0.99008 0.97288 1.70100 1.39309 1.08265 1.38647 0.85834 0.78999 0.79093 0.79717 1.19146 1.21116 1.20901 1.20738 0.90207 1.00488 0.90557 1.20135 0.98778 0.94367 0.96862 1.20865 0.98508 0.96641 0.94490 1.20878 1.04779 0.89354 0.94015 1.98320 1.81458 1.33042 1.92014 1.19883 0.97678 0.92513 0.96760 1.20899 1.02841 1.03991 0.89187 1.21430 1.00769 0.98043 0.95743 1.18269 0.93569 0.87994 0.90968 1.84852 1.35919 1.19708 1.89614 0.92454 0.94205 0.91015 0.91563 0.93131 0.95130 0.88237 0.95535 0.98706 0.93447 0.95697 0.88731 0.87399 0.90372 0.88473 0.90983 0.81812 0.73536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 11.01 113.37 1.25 2.24 16 2 O -0.40 -17.16 7.95 -148.98 -1.18 -18.34 16 3 C 0.07 2.54 6.20 71.98 0.45 2.99 16 4 C 0.05 2.04 5.32 86.30 0.46 2.50 16 5 N -0.53 -22.38 4.65 -905.35 -4.21 -26.59 16 6 C 0.20 10.95 4.53 85.56 0.39 11.34 16 7 C -0.52 -29.44 7.35 25.60 0.19 -29.25 16 8 H 0.05 2.78 5.95 -2.91 -0.02 2.76 16 9 C 0.02 0.92 5.45 84.65 0.46 1.38 16 10 N -0.92 -57.06 13.29 21.45 0.29 -56.78 16 11 Si 0.94 45.85 29.54 68.60 2.03 47.87 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 14 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 15 C 0.11 4.02 4.60 85.56 0.39 4.41 16 16 C -0.10 -3.64 4.60 -19.77 -0.09 -3.73 16 17 C -0.09 -3.38 8.32 22.28 0.19 -3.20 16 18 C -0.06 -2.21 6.31 22.33 0.14 -2.07 16 19 Cl -0.08 -2.56 27.29 -2.72 -0.07 -2.63 16 20 C -0.07 -1.89 5.88 -19.86 -0.12 -2.01 16 21 C -0.11 -2.33 9.61 71.24 0.68 -1.65 16 22 C -0.14 -3.70 9.64 22.36 0.22 -3.49 16 23 C 0.14 4.15 6.68 22.50 0.15 4.30 16 24 O -0.49 -12.38 12.74 -92.58 -1.18 -13.56 16 25 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.03 1.33 5.85 -2.39 -0.01 1.32 16 31 H 0.10 2.91 7.77 -2.39 -0.02 2.89 16 32 H 0.03 1.60 5.72 -2.38 -0.01 1.58 16 33 H -0.01 -0.31 6.26 -2.39 -0.01 -0.32 16 34 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.02 1.04 6.73 -2.39 -0.02 1.03 16 36 H 0.09 2.80 7.56 -2.39 -0.02 2.78 16 37 H 0.11 4.90 8.04 -2.91 -0.02 4.87 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 39 H 0.10 1.42 8.09 -2.38 -0.02 1.41 16 40 H 0.07 1.50 6.90 -2.39 -0.02 1.48 16 41 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 42 H 0.41 5.60 9.06 -74.06 -0.67 4.93 16 Total: -1.00 -72.56 355.44 0.79 -71.77 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.37 Total: 14.50 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 4.75 Total: -16.24 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -3.92 Total: -83.36 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -2.36 Total: -31.91 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.07 Total: -2.63 kcal Total: -72.56 0.79 -71.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824714463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.812 kcal (2) G-P(sol) polarization free energy of solvation -72.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds