Wall clock time and date at job start Tue Mar 31 2020 11:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36000 * 116.99905 * 2 1 4 4 C 1.38561 * 120.06777 * 0.24282 * 3 2 1 5 5 C 1.38333 * 119.98830 * 180.27327 * 4 3 2 6 6 Cl 1.73601 * 119.94281 * 179.76659 * 5 4 3 7 7 C 1.38360 * 120.12068 * 359.73920 * 5 4 3 8 8 C 1.38243 * 120.13205 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99299 * 179.97438 * 8 7 5 10 10 N 1.46907 * 109.46985 * 260.02237 * 9 8 7 11 11 C 1.46900 * 110.99703 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.46851 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46963 * 300.00122 * 12 11 10 14 14 C 1.52996 * 109.47187 * 60.00067 * 12 11 10 15 15 C 1.50697 * 109.47225 * 180.02562 * 12 11 10 16 16 H 1.08007 * 119.99997 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00207 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00001 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00022 * 179.97438 * 17 15 12 20 20 H 1.48510 * 109.46793 * 90.00111 * 19 17 15 21 21 H 1.48495 * 109.47354 * 209.99851 * 19 17 15 22 22 H 1.48505 * 109.47347 * 330.00498 * 19 17 15 23 23 C 1.38553 * 120.00862 * 0.02562 * 8 7 5 24 24 O 1.36017 * 120.05578 * 179.97438 * 23 8 7 25 25 H 1.09000 * 109.47094 * 59.99276 * 1 2 3 26 26 H 1.08998 * 109.47120 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46767 * 299.99387 * 1 2 3 28 28 H 1.08001 * 120.00483 * 0.03391 * 4 3 2 29 29 H 1.08000 * 119.93560 * 180.02562 * 7 5 4 30 30 H 1.08994 * 109.47131 * 20.02294 * 9 8 7 31 31 H 1.09001 * 109.47178 * 140.02423 * 9 8 7 32 32 H 1.00900 * 110.99944 * 303.95629 * 10 9 8 33 33 H 1.08995 * 109.47451 * 300.00138 * 11 10 9 34 34 H 1.08996 * 109.46943 * 60.00672 * 11 10 9 35 35 H 1.09002 * 109.47087 * 60.00303 * 13 12 11 36 36 H 1.09003 * 109.47278 * 180.02562 * 13 12 11 37 37 H 1.09005 * 109.47339 * 300.00206 * 13 12 11 38 38 H 1.08995 * 109.47088 * 60.00149 * 14 12 11 39 39 H 1.08996 * 109.47234 * 180.02562 * 14 12 11 40 40 H 1.09002 * 109.47400 * 300.00025 * 14 12 11 41 41 H 0.97000 * 119.99977 * 180.02562 * 18 17 15 42 42 H 0.96700 * 114.00140 * 90.00141 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3747 0.0051 5 6 1.9228 3.6064 -0.0006 6 17 0.9778 5.0627 -0.0004 7 6 3.3044 3.6799 -0.0060 8 6 4.0609 2.5228 -0.0062 9 6 5.5655 2.6064 -0.0126 10 7 6.0621 2.3905 -1.3782 11 6 7.5285 2.4658 -1.4231 12 6 8.0072 2.2371 -2.8583 13 6 7.5525 0.8556 -3.3335 14 6 7.4132 3.3115 -3.7713 15 6 9.5115 2.3136 -2.9043 16 1 10.0703 2.5066 -2.0004 17 6 10.1744 2.1384 -4.1005 18 7 9.4940 1.9040 -5.2012 19 14 12.0391 2.2340 -4.1576 20 1 12.6112 0.8830 -3.9279 21 1 12.4686 2.7337 -5.4884 22 1 12.5199 3.1612 -3.1019 23 6 3.4359 1.2862 -0.0015 24 8 4.1792 0.1472 -0.0022 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.2145 2.3195 0.0096 29 1 3.7929 4.6431 -0.0100 30 1 5.8761 3.5915 0.3355 31 1 5.9748 1.8420 0.6479 32 1 5.7333 1.5111 -1.7477 33 1 7.8524 3.4500 -1.0850 34 1 7.9516 1.7006 -0.7724 35 1 6.4644 0.7999 -3.3001 36 1 7.8939 0.6925 -4.3557 37 1 7.9757 0.0901 -2.6829 38 1 7.7371 4.2956 -3.4328 39 1 7.7538 3.1483 -4.7937 40 1 6.3251 3.2557 -3.7380 41 1 9.9604 1.7804 -6.0427 42 1 4.3975 -0.1806 0.8810 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839163250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:34 Heat of formation + Delta-G solvation = -84.044603 kcal Electronic energy + Delta-G solvation = -23950.350880 eV Core-core repulsion = 20341.976820 eV Total energy + Delta-G solvation = -3608.374060 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.59785 -39.31897 -38.40792 -38.13552 -36.95805 -35.53255 -33.20787 -31.33354 -30.62550 -28.28820 -27.49207 -27.24277 -26.89285 -24.64211 -23.57310 -22.26041 -20.33298 -19.57589 -18.69594 -17.91785 -17.84120 -17.02370 -16.87655 -16.46431 -16.18132 -15.98790 -15.55255 -15.16160 -15.06834 -14.52821 -14.24546 -14.06230 -13.91512 -13.57625 -13.38385 -13.15782 -12.99570 -12.81028 -12.67710 -12.54040 -12.43723 -12.37417 -12.09845 -12.06224 -11.97956 -11.68776 -11.57300 -11.29011 -10.93555 -10.58367 -10.32581 -9.82469 -9.19546 -9.12561 -7.94281 -6.11555 -0.08455 0.17536 1.02534 1.43951 1.45827 1.54480 2.18109 2.37784 2.48808 3.13948 3.27722 3.51094 3.72768 3.97601 4.01588 4.17938 4.27309 4.37478 4.39169 4.52257 4.58869 4.68107 4.71211 4.79122 4.87649 4.90546 5.04755 5.07966 5.19772 5.29689 5.31992 5.41219 5.45248 5.55605 5.71948 5.78347 6.16271 6.19573 6.25364 6.35326 6.50197 6.62621 6.80303 6.98284 7.56051 9.04009 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019892 B = 0.003029 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.232444 B = 9240.955343 C = 9990.447944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.320 6.320 3 C 0.108 3.892 4 C -0.187 4.187 5 C -0.009 4.009 6 Cl -0.058 7.058 7 C -0.119 4.119 8 C -0.057 4.057 9 C 0.105 3.895 10 N -0.683 5.683 11 C 0.090 3.910 12 C 0.060 3.940 13 C -0.118 4.118 14 C -0.105 4.105 15 C -0.526 4.526 16 H 0.048 0.952 17 C 0.021 3.979 18 N -0.905 5.905 19 Si 0.946 3.054 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.271 1.271 23 C 0.076 3.924 24 O -0.493 6.493 25 H 0.063 0.937 26 H 0.120 0.880 27 H 0.072 0.928 28 H 0.163 0.837 29 H 0.146 0.854 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.340 0.660 33 H 0.054 0.946 34 H 0.012 0.988 35 H 0.026 0.974 36 H 0.054 0.946 37 H 0.016 0.984 38 H 0.013 0.987 39 H 0.047 0.953 40 H 0.030 0.970 41 H 0.257 0.743 42 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.165 -0.253 14.426 24.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.234 6.234 3 C 0.061 3.939 4 C -0.206 4.206 5 C -0.036 4.036 6 Cl -0.029 7.029 7 C -0.139 4.139 8 C -0.059 4.059 9 C -0.024 4.024 10 N -0.315 5.315 11 C -0.038 4.038 12 C 0.059 3.941 13 C -0.176 4.176 14 C -0.162 4.162 15 C -0.564 4.564 16 H 0.066 0.934 17 C -0.178 4.178 18 N -0.544 5.544 19 Si 0.773 3.227 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.196 1.196 23 C 0.030 3.970 24 O -0.304 6.304 25 H 0.082 0.918 26 H 0.139 0.861 27 H 0.090 0.910 28 H 0.180 0.820 29 H 0.164 0.836 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.159 0.841 33 H 0.073 0.927 34 H 0.030 0.970 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -20.254 0.351 13.450 24.316 hybrid contribution 1.129 -0.657 0.549 1.417 sum -19.125 -0.306 13.999 23.703 Atomic orbital electron populations 1.23441 0.76229 1.05902 1.02500 1.86169 1.23552 1.25314 1.88363 1.19259 0.91360 0.85290 0.97945 1.21131 1.01642 0.89526 1.08307 1.20635 0.91684 0.87767 1.03498 1.98374 1.72150 1.35565 1.96793 1.20891 0.91435 0.99202 1.02332 1.19892 0.96165 0.91242 0.98557 1.20754 0.88774 1.02195 0.90670 1.60615 1.10219 1.40784 1.19863 1.21837 0.85699 0.98629 0.97664 1.18139 0.93112 0.92273 0.90554 1.21642 0.96388 0.97736 1.01845 1.21458 0.96875 0.96760 1.01153 1.21447 0.92623 1.48476 0.93887 0.93397 1.25567 1.01672 0.95042 0.95552 1.69983 1.35812 1.49510 0.99076 0.85748 0.81708 0.78111 0.77149 1.20544 1.21225 1.19589 1.17795 0.86701 0.86519 1.06026 1.84904 1.71688 1.39151 1.34678 0.91823 0.86131 0.90993 0.81962 0.83632 0.89410 0.93577 0.84094 0.92703 0.96982 0.95494 0.92663 0.96460 0.96781 0.93425 0.95135 0.93386 0.74018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.27 16 2 O -0.32 -6.75 10.28 -79.67 -0.82 -7.57 16 3 C 0.11 2.46 6.70 22.56 0.15 2.61 16 4 C -0.19 -3.66 8.82 22.37 0.20 -3.46 16 5 C -0.01 -0.19 6.32 22.32 0.14 -0.05 16 6 Cl -0.06 -1.10 28.95 -2.72 -0.08 -1.18 16 7 C -0.12 -2.80 9.44 22.30 0.21 -2.58 16 8 C -0.06 -1.46 5.40 -19.79 -0.11 -1.57 16 9 C 0.10 2.91 5.47 85.55 0.47 3.38 16 10 N -0.68 -24.38 5.70 -517.93 -2.95 -27.34 16 11 C 0.09 3.74 4.59 86.30 0.40 4.14 16 12 C 0.06 2.94 0.57 -52.93 -0.03 2.91 16 13 C -0.12 -5.80 7.92 71.98 0.57 -5.23 16 14 C -0.10 -5.23 8.09 71.98 0.58 -4.65 16 15 C -0.53 -28.63 8.01 25.60 0.21 -28.42 16 16 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 17 C 0.02 1.13 5.15 84.65 0.44 1.56 16 18 N -0.90 -51.38 9.35 21.45 0.20 -51.18 16 19 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 C 0.08 1.92 6.69 22.56 0.15 2.07 16 24 O -0.49 -12.38 12.46 -79.86 -1.00 -13.37 16 25 H 0.06 0.67 7.67 -2.39 -0.02 0.65 16 26 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 0.60 7.65 -2.38 -0.02 0.58 16 28 H 0.16 2.31 6.30 -2.91 -0.02 2.29 16 29 H 0.15 3.18 8.03 -2.91 -0.02 3.16 16 30 H 0.09 2.28 8.00 -2.39 -0.02 2.26 16 31 H 0.05 1.20 7.85 -2.39 -0.02 1.18 16 32 H 0.34 12.83 6.70 -89.69 -0.60 12.23 16 33 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.03 1.19 6.57 -2.39 -0.02 1.18 16 36 H 0.05 3.01 6.07 -2.39 -0.01 3.00 16 37 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.05 2.62 6.07 -2.39 -0.01 2.61 16 40 H 0.03 1.41 7.60 -2.39 -0.02 1.39 16 41 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 42 H 0.40 6.44 9.06 -74.06 -0.67 5.77 16 Total: -1.00 -63.29 354.94 1.64 -61.64 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -0.22 Total: 21.31 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 4.48 Total: -28.02 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -2.75 Total: -78.51 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -1.81 Total: -20.95 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -63.29 1.64 -61.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839163250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.401 kcal (2) G-P(sol) polarization free energy of solvation -63.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds