Wall clock time and date at job start Tue Mar 31 2020 10:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38322 * 120.06761 * 0.52464 * 12 11 10 14 14 C 1.38284 * 120.13970 * 359.76806 * 13 12 11 15 15 C 1.50702 * 119.96617 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46788 * 125.51352 * 179.72097 * 18 16 15 20 20 C 1.53821 * 104.42868 * 179.86895 * 19 18 16 21 21 N 1.46849 * 104.71093 * 0.38151 * 20 19 18 22 22 C 1.37531 * 142.62985 * 179.77987 * 21 20 19 23 23 C 1.34411 * 106.77851 * 179.97438 * 22 21 20 24 24 N 1.34084 * 108.30080 * 0.02562 * 23 22 21 25 25 C 1.32072 * 109.42844 * 359.97438 * 24 23 22 26 26 C 1.38123 * 120.06539 * 359.95907 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 30 30 H 1.08001 * 119.93423 * 179.74722 * 13 12 11 31 31 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 32 32 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 33 33 H 1.09002 * 110.44141 * 298.73813 * 19 18 16 34 34 H 1.08999 * 110.44760 * 61.26049 * 19 18 16 35 35 H 1.08997 * 110.60157 * 241.46500 * 20 19 18 36 36 H 1.09000 * 110.18250 * 119.08311 * 20 19 18 37 37 H 1.08003 * 126.61573 * 0.02562 * 22 21 20 38 38 H 1.07996 * 125.85028 * 180.02562 * 23 22 21 39 39 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4650 16 6 1.2648 -7.8050 -0.9053 17 8 1.6189 -7.1948 -1.8919 18 7 0.6604 -9.0026 -1.0345 19 6 0.3662 -9.6767 -2.3048 20 6 -0.3153 -10.9923 -1.8916 21 7 -0.3568 -10.9461 -0.4245 22 6 -0.7668 -11.6553 0.6802 23 6 -0.4397 -10.9200 1.7568 24 7 0.1520 -9.7937 1.3333 25 6 0.2089 -9.7967 0.0139 26 6 1.4365 -4.7345 0.2256 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2811 -4.5473 0.1885 30 1 4.1533 -6.7247 0.4045 31 1 2.1300 -7.9004 1.0432 32 1 0.5456 -7.0925 0.9733 33 1 -0.3075 -9.0704 -2.9103 34 1 1.2879 -9.8822 -2.8492 35 1 0.2688 -11.8489 -2.2282 36 1 -1.3253 -11.0367 -2.2989 37 1 -1.2564 -12.6180 0.6825 38 1 -0.6222 -11.1900 2.7864 39 1 0.3579 -4.7883 0.2363 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857907584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:15 Heat of formation + Delta-G solvation = 65.329797 kcal Electronic energy + Delta-G solvation = -24700.109643 eV Core-core repulsion = 20997.105449 eV Total energy + Delta-G solvation = -3703.004194 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.89286 -39.94127 -38.79948 -37.16897 -36.28847 -33.82683 -32.30107 -31.85385 -29.71093 -29.07914 -29.01859 -27.13625 -25.22392 -23.94319 -22.85596 -21.57091 -21.44495 -20.77698 -19.25927 -17.57324 -17.38660 -17.18512 -16.89026 -16.35786 -15.98611 -15.30888 -14.90176 -14.43940 -14.37647 -14.26179 -14.22300 -14.07133 -13.48281 -13.42683 -13.30245 -12.98127 -12.79975 -12.48131 -12.31431 -11.76430 -11.44400 -11.22710 -10.80304 -10.69558 -10.53702 -10.47977 -10.37551 -10.18818 -10.10992 -9.98033 -9.25473 -8.76850 -8.07108 -7.99217 -7.13603 -6.36968 -3.95746 1.56877 1.69218 2.21459 2.44480 2.47929 2.68037 3.03541 3.17561 3.18776 3.24466 3.51621 4.03132 4.15842 4.23529 4.29461 4.58211 4.74267 4.99727 5.03679 5.05901 5.14203 5.17823 5.20113 5.36067 5.50013 5.65715 5.81311 5.85854 5.94661 6.02889 6.25510 6.28649 6.42662 6.61604 6.73645 6.99771 7.05794 7.15541 7.36014 7.45065 7.52037 7.79359 7.87853 7.91295 8.08432 9.08955 9.80682 10.81524 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.025006 B = 0.002718 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.455034 B =10300.939692 C =10445.186876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.229 4.229 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.036 4.036 15 C -0.080 4.080 16 C 0.544 3.456 17 O -0.489 6.489 18 N -0.538 5.538 19 C 0.099 3.901 20 C 0.098 3.902 21 N -0.495 5.495 22 C -0.042 4.042 23 C 0.003 3.997 24 N -0.487 5.487 25 C 0.420 3.580 26 C -0.173 4.173 27 H 0.268 0.732 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.178 0.822 38 H 0.182 0.818 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.595 -24.655 -1.496 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.102 3.898 11 C -0.248 4.248 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.037 4.037 15 C -0.119 4.119 16 C 0.334 3.666 17 O -0.358 6.358 18 N -0.273 5.273 19 C -0.023 4.023 20 C -0.024 4.024 21 N -0.186 5.186 22 C -0.171 4.171 23 C -0.145 4.145 24 N -0.213 5.213 25 C 0.069 3.931 26 C -0.193 4.193 27 H 0.078 0.922 28 H 0.144 0.856 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.195 0.805 38 H 0.199 0.801 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.543 -23.504 -1.757 23.576 hybrid contribution 0.080 -0.020 -0.643 0.648 sum -0.463 -23.524 -2.400 23.651 Atomic orbital electron populations 1.70058 1.05924 1.27379 1.46649 1.25276 0.95833 0.98761 0.96734 0.85653 0.79140 0.80493 0.78165 1.19133 1.20236 1.20190 1.21365 0.91799 0.80861 1.52556 0.89079 1.83978 1.34238 1.11359 1.78848 1.19262 0.90237 0.87923 0.92406 1.21185 0.93820 0.98991 1.10848 1.20674 0.98376 0.92273 0.97995 1.20369 0.93261 0.96967 1.10786 1.18718 0.93276 0.91715 0.99955 1.20530 1.03713 0.95383 0.92295 1.20999 0.75118 0.77258 0.93198 1.90805 1.47506 1.57072 1.40396 1.45273 1.59130 1.19321 1.03617 1.22546 1.02213 0.91089 0.86445 1.22616 1.03560 0.99239 0.76951 1.46175 1.47376 1.18033 1.07024 1.22170 1.10705 1.00974 0.83268 1.22301 1.02287 0.90846 0.99076 1.70540 1.23817 1.23672 1.03263 1.20578 0.99043 0.85179 0.88287 1.19964 0.99123 0.89966 1.10214 0.92196 0.85582 0.87427 0.87891 0.87388 0.87263 0.87989 0.88087 0.87970 0.87984 0.80476 0.80058 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.09 13.67 55.48 0.76 -25.33 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.39 -11.29 9.49 30.89 0.29 -10.99 16 8 H 0.09 2.45 5.21 -52.49 -0.27 2.18 16 9 O -0.18 -5.39 9.76 0.05 0.00 -5.39 16 10 C 0.15 3.99 6.65 -39.11 -0.26 3.73 16 11 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 12 C -0.07 -1.49 10.04 -39.61 -0.40 -1.89 16 13 C -0.19 -3.71 9.70 -39.53 -0.38 -4.09 16 14 C -0.04 -0.71 4.37 -104.65 -0.46 -1.16 16 15 C -0.08 -1.28 4.52 -29.03 -0.13 -1.41 16 16 C 0.54 8.71 7.81 -10.99 -0.09 8.63 16 17 O -0.49 -9.43 16.35 5.56 0.09 -9.34 16 18 N -0.54 -6.81 3.12 -115.94 -0.36 -7.17 16 19 C 0.10 0.80 7.16 -3.46 -0.02 0.78 16 20 C 0.10 0.54 7.99 -3.42 -0.03 0.52 16 21 N -0.50 -4.52 3.70 -116.58 -0.43 -4.95 16 22 C -0.04 -0.33 12.05 -16.35 -0.20 -0.53 16 23 C 0.00 0.03 11.84 -17.92 -0.21 -0.19 16 24 N -0.49 -6.35 10.72 -13.80 -0.15 -6.50 16 25 C 0.42 5.18 8.28 -318.56 -2.64 2.54 16 26 C -0.17 -3.98 9.65 -39.40 -0.38 -4.36 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 29 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.11 1.57 8.08 -51.93 -0.42 1.15 16 32 H 0.11 1.72 8.08 -51.93 -0.42 1.30 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.18 0.74 8.06 -52.48 -0.42 0.32 16 38 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.11 2.56 8.06 -52.48 -0.42 2.13 16 LS Contribution 340.59 15.07 5.13 5.13 Total: -1.00 -36.99 340.59 -9.69 -46.68 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.35 Total: 3.86 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -5.36 Total: -13.13 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.18 Total: -43.95 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.09 Total: -14.72 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.99 -9.69 -46.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857907584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.007 kcal (2) G-P(sol) polarization free energy of solvation -36.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds