Wall clock time and date at job start Tue Mar 31 2020 10:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38322 * 120.06761 * 0.52464 * 12 11 10 14 14 C 1.38284 * 120.13970 * 359.76806 * 13 12 11 15 15 C 1.50702 * 119.96617 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46788 * 125.51352 * 179.72097 * 18 16 15 20 20 C 1.53821 * 104.42868 * 179.86895 * 19 18 16 21 21 N 1.46849 * 104.71093 * 0.38151 * 20 19 18 22 22 C 1.37531 * 142.62985 * 179.77987 * 21 20 19 23 23 C 1.34411 * 106.77851 * 179.97438 * 22 21 20 24 24 N 1.34084 * 108.30080 * 0.02562 * 23 22 21 25 25 C 1.32072 * 109.42844 * 359.97438 * 24 23 22 26 26 C 1.38123 * 120.06539 * 359.95907 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 30 30 H 1.08001 * 119.93423 * 179.74722 * 13 12 11 31 31 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 32 32 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 33 33 H 1.09002 * 110.44141 * 298.73813 * 19 18 16 34 34 H 1.08999 * 110.44760 * 61.26049 * 19 18 16 35 35 H 1.08997 * 110.60157 * 241.46500 * 20 19 18 36 36 H 1.09000 * 110.18250 * 119.08311 * 20 19 18 37 37 H 1.08003 * 126.61573 * 0.02562 * 22 21 20 38 38 H 1.07996 * 125.85028 * 180.02562 * 23 22 21 39 39 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4650 16 6 1.2648 -7.8050 -0.9053 17 8 1.6189 -7.1948 -1.8919 18 7 0.6604 -9.0026 -1.0345 19 6 0.3662 -9.6767 -2.3048 20 6 -0.3153 -10.9923 -1.8916 21 7 -0.3568 -10.9461 -0.4245 22 6 -0.7668 -11.6553 0.6802 23 6 -0.4397 -10.9200 1.7568 24 7 0.1520 -9.7937 1.3333 25 6 0.2089 -9.7967 0.0139 26 6 1.4365 -4.7345 0.2256 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2811 -4.5473 0.1885 30 1 4.1533 -6.7247 0.4045 31 1 2.1300 -7.9004 1.0432 32 1 0.5456 -7.0925 0.9733 33 1 -0.3075 -9.0704 -2.9103 34 1 1.2879 -9.8822 -2.8492 35 1 0.2688 -11.8489 -2.2282 36 1 -1.3253 -11.0367 -2.2989 37 1 -1.2564 -12.6180 0.6825 38 1 -0.6222 -11.1900 2.7864 39 1 0.3579 -4.7883 0.2363 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857907584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:14 Heat of formation + Delta-G solvation = 42.872480 kcal Electronic energy + Delta-G solvation = -24701.083466 eV Core-core repulsion = 20997.105449 eV Total energy + Delta-G solvation = -3703.978016 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.63630 -41.23636 -40.50086 -38.44175 -37.75317 -34.74482 -34.32447 -33.39032 -30.97866 -30.38620 -29.74531 -28.56271 -27.27577 -24.89927 -23.65504 -23.27740 -22.52904 -22.08487 -20.36488 -19.46687 -18.77318 -18.18429 -18.12127 -17.17449 -16.92914 -16.79902 -16.55280 -16.09734 -15.87226 -15.56305 -15.24058 -15.03556 -14.91049 -14.85337 -14.38310 -14.05861 -14.02796 -13.66279 -13.49638 -13.46080 -13.00055 -12.93388 -12.52389 -12.40727 -12.26573 -12.08189 -11.42634 -11.30319 -11.21413 -10.98485 -10.81239 -10.66604 -9.69618 -9.01154 -8.84391 -8.46977 -6.15794 0.43491 0.68220 0.72059 0.98591 1.34582 1.43676 1.48403 1.53773 2.01828 2.17839 2.20160 2.71571 2.90735 3.12927 3.37084 3.41169 3.63386 3.79431 3.81543 4.06047 4.15048 4.26606 4.34820 4.37659 4.45863 4.53873 4.55587 4.58377 4.63050 4.70602 4.76712 5.02258 5.12353 5.18128 5.26240 5.47157 5.61600 5.69711 5.71684 5.98878 6.02283 6.11486 6.21321 6.71276 6.97332 7.04888 7.78399 8.76921 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.025006 B = 0.002718 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.455034 B =10300.939692 C =10445.186876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 1.022 2.978 4 H -0.250 1.250 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.414 4.414 8 H 0.102 0.898 9 O -0.234 6.234 10 C 0.116 3.884 11 C -0.241 4.241 12 C -0.068 4.068 13 C -0.179 4.179 14 C -0.029 4.029 15 C -0.073 4.073 16 C 0.546 3.454 17 O -0.534 6.534 18 N -0.536 5.536 19 C 0.088 3.912 20 C 0.103 3.897 21 N -0.489 5.489 22 C -0.016 4.016 23 C -0.026 4.026 24 N -0.520 5.520 25 C 0.378 3.622 26 C -0.192 4.192 27 H 0.272 0.728 28 H 0.123 0.877 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.129 0.871 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.221 0.779 38 H 0.203 0.797 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 -27.976 -1.594 28.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.222 4.222 3 Si 0.841 3.159 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.490 4.490 8 H 0.120 0.880 9 O -0.141 6.141 10 C 0.066 3.934 11 C -0.260 4.260 12 C -0.086 4.086 13 C -0.198 4.198 14 C -0.030 4.030 15 C -0.112 4.112 16 C 0.336 3.664 17 O -0.408 6.408 18 N -0.270 5.270 19 C -0.033 4.033 20 C -0.017 4.017 21 N -0.179 5.179 22 C -0.146 4.146 23 C -0.173 4.173 24 N -0.247 5.247 25 C 0.028 3.972 26 C -0.212 4.212 27 H 0.081 0.919 28 H 0.140 0.860 29 H 0.168 0.832 30 H 0.162 0.838 31 H 0.146 0.854 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.237 0.763 38 H 0.220 0.780 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.949 -26.930 -1.855 27.011 hybrid contribution -0.388 0.570 -0.550 0.882 sum 0.561 -26.361 -2.405 26.476 Atomic orbital electron populations 1.70209 1.08101 1.28714 1.49080 1.26649 0.96900 1.02811 0.95843 0.84490 0.78235 0.74606 0.78591 1.17376 1.19334 1.19168 1.21898 0.92584 0.81380 1.53125 0.88023 1.83942 1.35976 1.12574 1.81599 1.19790 0.91708 0.87689 0.94211 1.21327 0.92930 1.00371 1.11404 1.21135 1.00395 0.91125 0.95960 1.20934 0.93116 0.98305 1.07434 1.19099 0.93991 0.92170 0.97696 1.20456 1.03667 0.93782 0.93293 1.20665 0.75323 0.78196 0.92211 1.90785 1.50030 1.58678 1.41296 1.45028 1.57861 1.18469 1.05593 1.22910 1.03293 0.92186 0.84892 1.22900 1.05395 0.98583 0.74851 1.46467 1.46003 1.16826 1.08634 1.22885 1.08109 1.01451 0.82138 1.22824 1.03074 0.90488 1.00899 1.70397 1.24495 1.25543 1.04299 1.20552 1.01660 0.86707 0.88285 1.20145 0.99084 0.90570 1.11367 0.91851 0.85954 0.83168 0.83801 0.85359 0.87517 0.87844 0.86915 0.84711 0.85378 0.76278 0.78020 0.87962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.79 13.67 21.61 0.30 -58.49 16 2 C -0.03 -1.48 5.49 84.83 0.47 -1.01 16 3 Si 1.02 44.51 29.55 68.60 2.03 46.53 16 4 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.41 -25.30 9.49 67.92 0.64 -24.66 16 8 H 0.10 5.71 5.21 -2.91 -0.02 5.69 16 9 O -0.23 -15.02 9.76 -22.74 -0.22 -15.25 16 10 C 0.12 6.32 6.65 22.58 0.15 6.47 16 11 C -0.24 -11.38 9.17 22.39 0.21 -11.18 16 12 C -0.07 -2.58 10.04 22.25 0.22 -2.36 16 13 C -0.18 -6.43 9.70 22.30 0.22 -6.21 16 14 C -0.03 -1.14 4.37 -19.88 -0.09 -1.23 16 15 C -0.07 -2.32 4.52 29.10 0.13 -2.19 16 16 C 0.55 17.45 7.81 87.66 0.68 18.13 16 17 O -0.53 -20.92 16.35 -3.04 -0.05 -20.97 16 18 N -0.54 -13.06 3.12 -639.10 -2.00 -15.05 16 19 C 0.09 1.26 7.16 86.60 0.62 1.88 16 20 C 0.10 0.75 7.99 86.59 0.69 1.44 16 21 N -0.49 -7.34 3.70 -522.74 -1.93 -9.27 16 22 C -0.02 -0.19 12.05 82.92 1.00 0.81 16 23 C -0.03 -0.44 11.84 83.47 0.99 0.55 16 24 N -0.52 -12.98 10.72 -197.58 -2.12 -15.09 16 25 C 0.38 8.74 8.28 260.00 2.15 10.90 16 26 C -0.19 -9.32 9.65 22.39 0.22 -9.11 16 27 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 28 H 0.12 5.75 5.64 -2.91 -0.02 5.74 16 29 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 31 H 0.13 3.54 8.08 -2.39 -0.02 3.52 16 32 H 0.11 3.46 8.08 -2.39 -0.02 3.44 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.14 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.13 0.33 8.14 -2.39 -0.02 0.32 16 37 H 0.22 0.61 8.06 -2.91 -0.02 0.58 16 38 H 0.20 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -88.14 340.59 5.39 -82.75 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 1.08 Total: 22.60 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 8.30 Total: -17.75 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -5.75 Total: -97.91 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -0.27 Total: -36.22 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -88.14 5.39 -82.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857907584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.621 kcal (2) G-P(sol) polarization free energy of solvation -88.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds