Wall clock time and date at job start Tue Mar 31 2020 11:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29949 * 126.28606 * 2 1 4 4 O 1.21298 * 110.24645 * 179.73572 * 3 2 1 5 5 C 1.33642 * 109.81592 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.55473 * 179.97438 * 5 4 3 7 7 C 1.53950 * 113.73748 * 38.76789 * 6 5 4 8 8 N 1.47818 * 86.03680 * 222.08414 * 7 6 5 9 9 C 1.34780 * 134.45327 * 204.64872 * 8 7 6 10 10 O 1.21607 * 119.99487 * 174.67790 * 9 8 7 11 11 C 1.47422 * 120.00369 * 354.67765 * 9 8 7 12 12 C 1.39225 * 120.28063 * 334.59891 * 11 9 8 13 13 C 1.38235 * 120.08982 * 179.74838 * 12 11 9 14 14 C 1.38825 * 120.67481 * 0.55790 * 13 12 11 15 15 C 1.37593 * 120.57106 * 359.69702 * 14 13 12 16 16 C 1.40711 * 119.88539 * 0.02562 * 15 14 13 17 17 C 1.40878 * 120.33228 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00282 * 147.91387 * 17 16 15 19 19 C 1.40280 * 119.99928 * 327.91744 * 17 16 15 20 20 N 1.30627 * 120.00030 * 167.71380 * 19 17 16 21 21 Si 1.86796 * 119.99982 * 347.70876 * 19 17 16 22 22 H 1.48501 * 109.46862 * 92.48366 * 21 19 17 23 23 H 1.48491 * 109.47449 * 212.48649 * 21 19 17 24 24 H 1.48501 * 109.47165 * 332.48747 * 21 19 17 25 25 C 1.47580 * 91.05059 * 24.54977 * 8 7 6 26 26 N 1.31128 * 106.89518 * 359.97438 * 5 4 3 27 27 H 1.08998 * 109.47269 * 90.01420 * 1 2 3 28 28 H 1.08996 * 109.47174 * 210.02061 * 1 2 3 29 29 H 1.09002 * 109.46380 * 330.01865 * 1 2 3 30 30 H 1.08995 * 112.94660 * 170.35488 * 6 5 4 31 31 H 1.08994 * 113.77188 * 336.34685 * 7 6 5 32 32 H 1.09002 * 113.76885 * 107.74859 * 7 6 5 33 33 H 1.07997 * 119.95649 * 0.02572 * 12 11 9 34 34 H 1.07994 * 119.65939 * 180.25885 * 13 12 11 35 35 H 1.07998 * 119.71154 * 179.72608 * 14 13 12 36 36 H 1.07998 * 120.06018 * 180.02562 * 15 14 13 37 37 H 0.96999 * 120.00004 * 179.97438 * 20 19 17 38 38 H 1.08998 * 113.76717 * 221.15525 * 25 8 7 39 39 H 1.09000 * 113.87026 * 89.76935 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 0.0052 5 6 3.5299 -0.6212 0.0087 6 6 4.7969 -1.4370 0.0149 7 6 5.9098 -0.8467 0.8997 8 7 6.8309 -1.1991 -0.2014 9 6 8.1502 -1.4632 -0.2804 10 8 8.6355 -1.8258 -1.3348 11 6 9.0048 -1.3123 0.9113 12 6 8.6385 -0.4392 1.9320 13 6 9.4402 -0.3047 3.0501 14 6 10.6211 -1.0253 3.1656 15 6 11.0122 -1.8920 2.1711 16 6 10.2113 -2.0516 1.0252 17 6 10.6030 -2.9360 0.0010 18 1 9.8549 -3.4567 -0.5784 19 6 11.9648 -3.1404 -0.2664 20 7 12.3381 -4.1253 -1.0391 21 14 13.2445 -2.0042 0.4824 22 1 13.7205 -2.5741 1.7684 23 1 14.3904 -1.8653 -0.4518 24 1 12.6398 -0.6699 0.7259 25 6 5.7259 -1.1483 -1.1783 26 7 2.3030 -1.0841 0.0056 27 1 -0.3634 -0.0003 -1.0276 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3632 0.8902 0.5136 30 1 4.6179 -2.4986 0.1849 31 1 5.8154 0.2262 1.0670 32 1 6.0854 -1.4078 1.8175 33 1 7.7245 0.1305 1.8522 34 1 9.1472 0.3715 3.8395 35 1 11.2379 -0.9049 4.0439 36 1 11.9324 -2.4488 2.2697 37 1 13.2797 -4.2665 -1.2243 38 1 5.7549 -1.9499 -1.9164 39 1 5.5760 -0.1650 -1.6240 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867826538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:30 Heat of formation + Delta-G solvation = 76.167368 kcal Electronic energy + Delta-G solvation = -25016.234788 eV Core-core repulsion = 21313.700546 eV Total energy + Delta-G solvation = -3702.534242 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.67408 -41.42408 -39.61619 -38.23341 -37.12426 -35.57912 -34.23646 -32.38368 -32.23103 -30.48029 -29.83385 -27.43821 -27.16389 -25.58430 -24.52531 -23.62879 -22.73480 -21.46129 -20.16410 -19.33033 -19.21646 -18.62885 -18.15769 -17.48980 -17.34353 -16.75421 -15.85641 -15.82211 -15.36455 -15.15817 -14.95040 -14.52111 -14.45828 -14.18795 -14.03733 -13.88343 -13.76232 -13.71339 -13.36874 -13.21725 -12.99531 -12.80493 -12.68469 -12.58019 -12.20912 -12.12097 -12.01501 -11.88136 -11.59421 -11.05405 -10.88373 -10.51327 -9.78401 -9.50620 -9.42009 -8.88840 -6.49010 0.00482 0.38110 0.84410 1.12681 1.23541 1.37962 1.47240 1.51588 1.95576 2.09537 2.17874 2.58505 2.67845 3.03041 3.13482 3.52040 3.55349 3.84284 3.99975 4.16297 4.27166 4.36430 4.42791 4.46751 4.52288 4.56597 4.59974 4.67930 4.69572 4.79750 4.87675 4.97075 4.99162 5.05760 5.10978 5.28511 5.50541 5.72104 5.86458 5.96341 6.22997 6.39236 6.63482 6.76029 6.80221 7.08851 7.47659 8.18144 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.027104 B = 0.003162 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.825740 B = 8854.221667 C = 9556.309962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.164 3.836 3 N -0.406 5.406 4 O 0.074 5.926 5 C 0.206 3.794 6 C -0.016 4.016 7 C 0.117 3.883 8 N -0.655 5.655 9 C 0.587 3.413 10 O -0.577 6.577 11 C -0.261 4.261 12 C -0.038 4.038 13 C -0.233 4.233 14 C -0.058 4.058 15 C -0.254 4.254 16 C 0.101 3.899 17 C -0.440 4.440 18 H 0.054 0.946 19 C 0.036 3.964 20 N -0.846 5.846 21 Si 0.972 3.028 22 H -0.246 1.246 23 H -0.282 1.282 24 H -0.251 1.251 25 C 0.117 3.883 26 N -0.495 5.495 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.158 0.842 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.136 0.864 36 H 0.102 0.898 37 H 0.294 0.706 38 H 0.088 0.912 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.956 9.112 7.257 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 N -0.117 5.117 4 O 0.018 5.982 5 C -0.015 4.015 6 C -0.037 4.037 7 C -0.006 4.006 8 N -0.392 5.392 9 C 0.382 3.618 10 O -0.457 6.457 11 C -0.265 4.265 12 C -0.057 4.057 13 C -0.252 4.252 14 C -0.076 4.076 15 C -0.273 4.273 16 C 0.097 3.903 17 C -0.469 4.469 18 H 0.072 0.928 19 C -0.178 4.178 20 N -0.472 5.472 21 Si 0.795 3.205 22 H -0.170 1.170 23 H -0.209 1.209 24 H -0.175 1.175 25 C -0.006 4.006 26 N -0.229 5.229 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.176 0.824 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.965 9.187 6.499 21.199 hybrid contribution 0.966 -0.287 -0.559 1.152 sum -16.999 8.900 5.940 20.087 Atomic orbital electron populations 1.20368 0.80312 1.05887 1.05573 1.26665 1.02181 0.82872 0.99125 1.74665 0.89605 1.24556 1.22825 1.85269 1.22387 1.24708 1.65798 1.28436 0.96227 0.81963 0.94835 1.21889 0.83151 0.99792 0.98850 1.23582 0.81774 1.02583 0.92649 1.49852 1.05606 1.71082 1.12635 1.18187 0.79916 0.75373 0.88296 1.90760 1.73381 1.48526 1.33032 1.19642 1.00876 1.08173 0.97853 1.21312 0.98458 0.94416 0.91485 1.20925 0.97404 1.06574 1.00312 1.21228 0.96257 0.93091 0.97072 1.21191 1.02721 1.07059 0.96311 1.17752 0.91509 0.89068 0.91973 1.19573 0.92949 1.19981 1.14376 0.92772 1.27086 1.01342 0.95565 0.93849 1.69617 1.20153 1.26681 1.30782 0.85433 0.76273 0.80454 0.78325 1.17045 1.20931 1.17469 1.23241 0.80718 1.03582 0.93068 1.71947 1.00055 1.29963 1.20952 0.87930 0.87810 0.88230 0.82414 0.86719 0.87074 0.84318 0.83854 0.84659 0.88045 0.89506 0.89387 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.51 71.24 0.75 0.06 16 2 C 0.16 3.24 8.22 138.46 1.14 4.37 16 3 N -0.41 -9.12 12.16 -60.33 -0.73 -9.86 16 4 O 0.07 1.59 11.09 74.85 0.83 2.42 16 5 C 0.21 4.10 7.52 88.38 0.66 4.77 16 6 C -0.02 -0.30 4.47 -10.88 -0.05 -0.35 16 7 C 0.12 2.37 5.87 86.44 0.51 2.87 16 8 N -0.65 -20.75 3.58 -839.95 -3.01 -23.76 16 9 C 0.59 26.63 7.61 86.66 0.66 27.29 16 10 O -0.58 -32.43 15.04 -4.05 -0.06 -32.49 16 11 C -0.26 -11.80 5.86 -19.70 -0.12 -11.92 16 12 C -0.04 -1.33 8.82 22.51 0.20 -1.13 16 13 C -0.23 -7.53 10.03 22.41 0.22 -7.31 16 14 C -0.06 -2.11 10.01 22.26 0.22 -1.88 16 15 C -0.25 -11.45 7.01 22.72 0.16 -11.29 16 16 C 0.10 5.21 5.13 -21.11 -0.11 5.10 16 17 C -0.44 -26.13 8.15 23.41 0.19 -25.94 16 18 H 0.05 3.65 6.63 -2.91 -0.02 3.63 16 19 C 0.04 2.03 5.47 85.37 0.47 2.50 16 20 N -0.85 -49.00 13.92 21.88 0.30 -48.69 16 21 Si 0.97 43.90 24.43 68.60 1.68 45.57 16 22 H -0.25 -9.99 6.67 99.48 0.66 -9.33 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.25 -11.49 6.71 99.48 0.67 -10.82 16 25 C 0.12 2.83 8.40 86.49 0.73 3.56 16 26 N -0.49 -10.70 11.55 -303.22 -3.50 -14.20 16 27 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.16 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.11 1.83 7.53 -2.39 -0.02 1.81 16 32 H 0.11 2.06 7.88 -2.39 -0.02 2.04 16 33 H 0.14 3.66 5.59 -2.91 -0.02 3.64 16 34 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 35 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.10 4.57 4.54 -2.91 -0.01 4.55 16 37 H 0.29 15.21 8.29 -92.71 -0.77 14.44 16 38 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 39 H 0.10 2.15 8.09 -2.39 -0.02 2.13 16 Total: -1.00 -77.17 330.71 2.16 -75.01 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 1.02 Total: 15.30 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 5.63 Total: -9.29 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -6.94 Total: -96.51 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: 0.77 Total: -30.08 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.68 Total: 45.57 kcal Total: -77.17 2.16 -75.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867826538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.174 kcal (2) G-P(sol) polarization free energy of solvation -77.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds