Wall clock time and date at job start Tue Mar 31 2020 10:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38353 * 119.84808 * 2 1 4 4 C 1.37960 * 120.14835 * 180.23853 * 3 2 1 5 5 C 1.39608 * 119.84787 * 359.51669 * 4 3 2 6 6 C 1.47643 * 120.14710 * 180.27884 * 5 4 3 7 7 N 1.29079 * 125.86920 * 0.02562 * 6 5 4 8 8 O 1.41387 * 112.87600 * 179.64715 * 7 6 5 9 9 C 1.44206 * 107.59417 * 17.49590 * 8 7 6 10 10 H 1.09001 * 110.97163 * 216.48153 * 9 8 7 11 11 C 1.50700 * 110.96933 * 92.74855 * 9 8 7 12 12 O 1.21292 * 120.00102 * 356.45654 * 11 9 8 13 13 N 1.34777 * 119.99666 * 176.45541 * 11 9 8 14 14 C 1.37104 * 119.99838 * 180.02562 * 13 11 9 15 15 H 1.08002 * 119.99920 * 5.60991 * 14 13 11 16 16 C 1.38946 * 119.99872 * 185.62053 * 14 13 11 17 17 N 1.31408 * 120.00452 * 27.21813 * 16 14 13 18 18 Si 1.86802 * 119.99932 * 207.22314 * 16 14 13 19 19 H 1.48503 * 109.47478 * 89.99674 * 18 16 14 20 20 H 1.48501 * 109.47328 * 209.99898 * 18 16 14 21 21 H 1.48503 * 109.46845 * 330.00081 * 18 16 14 22 22 C 1.46500 * 120.00352 * 359.97438 * 13 11 9 23 23 C 1.47194 * 109.46833 * 92.92029 * 22 13 11 24 24 N 6.43927 * 135.53962 * 200.12042 * 2 1 3 25 25 C 1.51692 * 125.86130 * 179.71315 * 6 5 4 26 26 C 1.39612 * 119.70356 * 0.24968 * 5 4 3 27 27 C 1.37949 * 119.84490 * 0.02562 * 26 5 4 28 28 H 1.09001 * 109.46684 * 270.22650 * 1 2 3 29 29 H 1.08993 * 109.47348 * 30.22462 * 1 2 3 30 30 H 1.09001 * 109.47342 * 150.23013 * 1 2 3 31 31 H 1.08000 * 119.93177 * 0.02575 * 3 2 1 32 32 H 1.07998 * 120.07323 * 179.79294 * 4 3 2 33 33 H 0.97006 * 120.00218 * 180.02562 * 17 16 14 34 34 H 1.08997 * 109.47023 * 212.92306 * 22 13 11 35 35 H 1.08997 * 109.46670 * 332.92114 * 22 13 11 36 36 H 1.09000 * 110.79723 * 282.90231 * 25 6 5 37 37 H 1.09001 * 110.79631 * 46.37981 * 25 6 5 38 38 H 1.07994 * 120.07556 * 180.02562 * 26 5 4 39 39 H 1.08007 * 119.92266 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2000 0.0000 4 6 3.5752 1.2072 -0.0050 5 6 4.2764 0.0000 0.0002 6 6 5.7528 0.0001 0.0012 7 7 6.5091 1.0461 -0.0020 8 8 7.8867 0.7283 0.0080 9 6 8.0191 -0.6500 -0.3947 10 1 8.8234 -1.1410 0.1530 11 6 8.2381 -0.7587 -1.8818 12 8 8.2175 0.2383 -2.5723 13 7 8.4570 -1.9637 -2.4443 14 6 8.6568 -2.0626 -3.7971 15 1 8.7292 -1.1687 -4.3990 16 6 8.7659 -3.3127 -4.3937 17 7 8.1781 -4.3542 -3.8492 18 14 9.7482 -3.5128 -5.9699 19 1 11.1615 -3.8237 -5.6364 20 1 9.1739 -4.6215 -6.7738 21 1 9.6903 -2.2522 -6.7527 22 6 8.4825 -3.1678 -1.6102 23 6 7.1399 -3.7701 -1.5769 24 7 6.1029 -4.2349 -1.5515 25 6 6.6415 -1.2292 0.0127 26 6 3.5752 -1.2072 0.0051 27 6 2.1957 -1.2000 0.0043 28 1 -0.3633 0.0041 1.0277 29 1 -0.3634 0.8879 -0.5173 30 1 -0.3634 -0.8920 -0.5103 31 1 1.6520 2.1332 0.0004 32 1 4.1114 2.1447 -0.0083 33 1 8.2546 -5.2270 -4.2656 34 1 9.1915 -3.8833 -2.0267 35 1 8.7868 -2.9021 -0.5979 36 1 6.6832 -1.6672 1.0099 37 1 6.2990 -1.9612 -0.7187 38 1 4.1115 -2.1446 0.0096 39 1 1.6520 -2.1332 0.0076 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889039738.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:17 Heat of formation + Delta-G solvation = 58.451195 kcal Electronic energy + Delta-G solvation = -25597.486354 eV Core-core repulsion = 21894.183882 eV Total energy + Delta-G solvation = -3703.302472 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.46085 -39.23478 -38.09082 -35.94816 -34.44738 -34.01802 -32.22401 -31.50048 -31.17756 -30.27146 -27.60452 -27.08919 -25.58332 -23.65869 -22.36474 -22.26330 -20.10311 -19.32918 -18.16923 -17.21421 -16.71109 -16.43084 -15.59392 -15.35621 -15.22928 -15.08432 -14.38612 -14.30239 -13.94804 -13.79299 -13.60270 -13.49861 -13.19445 -12.92016 -12.77542 -12.45850 -12.32783 -12.21688 -11.87642 -11.78326 -11.48881 -11.38645 -11.34542 -11.23318 -11.11985 -10.66491 -10.50180 -10.46778 -10.34867 -9.94557 -9.35502 -9.00676 -8.66492 -8.27865 -8.20603 -6.67076 -4.05989 0.75412 1.36665 2.35209 2.98079 3.16469 3.19534 3.22776 3.39629 3.65488 3.77654 3.83818 4.00430 4.15962 4.44049 4.62953 4.66968 4.75651 4.77627 4.82657 4.95708 5.04710 5.21998 5.28975 5.34385 5.34961 5.41182 5.58579 5.61675 5.63993 5.72967 5.86194 5.90220 5.98207 6.03190 6.38109 6.38708 6.45406 6.49209 6.87594 7.35336 7.55439 7.72258 8.15158 8.58178 8.86484 9.04722 9.56598 10.38297 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.015828 B = 0.004150 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.637539 B = 6746.166108 C = 7478.262124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 C -0.126 4.126 4 C -0.076 4.076 5 C -0.040 4.040 6 C 0.121 3.879 7 N -0.274 5.274 8 O -0.166 6.166 9 C 0.032 3.968 10 H 0.130 0.870 11 C 0.434 3.566 12 O -0.550 6.550 13 N -0.436 5.436 14 C -0.318 4.318 15 H 0.114 0.886 16 C 0.036 3.964 17 N -0.871 5.871 18 Si 0.926 3.074 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.268 1.268 22 C 0.213 3.787 23 C 0.248 3.752 24 N -0.467 5.467 25 C -0.147 4.147 26 C -0.078 4.078 27 C -0.122 4.122 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.276 0.724 34 H 0.132 0.868 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.883 1.585 10.635 13.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.074 4.074 3 C -0.144 4.144 4 C -0.096 4.096 5 C -0.041 4.041 6 C -0.069 4.069 7 N -0.014 5.014 8 O -0.185 6.185 9 C -0.031 4.031 10 H 0.147 0.853 11 C 0.221 3.779 12 O -0.430 6.430 13 N -0.158 5.158 14 C -0.444 4.444 15 H 0.132 0.868 16 C -0.168 4.168 17 N -0.510 5.510 18 Si 0.752 3.248 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.192 1.192 22 C 0.086 3.914 23 C -0.070 4.070 24 N -0.148 5.148 25 C -0.187 4.187 26 C -0.098 4.098 27 C -0.140 4.140 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.087 0.913 34 H 0.149 0.851 35 H 0.101 0.899 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.148 0.852 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.136 2.459 10.306 13.991 hybrid contribution 1.028 -1.303 -1.030 1.953 sum -8.108 1.156 9.276 12.374 Atomic orbital electron populations 1.20827 0.91044 1.02993 1.02369 1.20089 0.96236 0.93170 0.97934 1.20954 0.93702 0.97727 1.02037 1.21330 0.94128 0.97537 0.96615 1.17795 0.87337 0.94321 1.04627 1.24131 0.94079 0.92751 0.95911 1.78289 0.89396 1.22004 1.11664 1.91236 1.15219 1.26358 1.85681 1.23637 0.98460 0.84693 0.96311 0.85257 1.20058 0.84631 0.84552 0.88660 1.90605 1.53862 1.35576 1.62979 1.43735 1.61558 1.02865 1.07657 1.19799 1.47862 0.94644 0.82083 0.86849 1.25217 0.96561 0.94915 1.00085 1.69866 1.37556 1.01430 1.42111 0.85913 0.79808 0.78325 0.80725 1.19939 1.21064 1.19212 1.18973 0.88506 0.89228 0.94721 1.29132 0.94741 0.92653 0.90433 1.80944 1.12731 1.09456 1.11680 1.23191 0.91694 0.98869 1.04941 1.21296 0.94383 0.97163 0.96974 1.20948 0.93660 0.97818 1.01600 0.91007 0.91406 0.91342 0.85542 0.84933 0.91336 0.85053 0.89941 0.87354 0.87232 0.85156 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.00 36.01 0.36 -0.56 16 2 C -0.07 -0.82 5.89 -104.54 -0.62 -1.43 16 3 C -0.13 -1.47 9.68 -39.64 -0.38 -1.86 16 4 C -0.08 -1.07 9.69 -39.17 -0.38 -1.45 16 5 C -0.04 -0.62 5.87 -105.03 -0.62 -1.24 16 6 C 0.12 2.14 7.15 -79.42 -0.57 1.57 16 7 N -0.27 -5.43 12.12 35.30 0.43 -5.00 16 8 O -0.17 -3.40 11.82 -30.20 -0.36 -3.76 16 9 C 0.03 0.58 3.21 -26.88 -0.09 0.49 16 10 H 0.13 1.81 7.06 -51.93 -0.37 1.44 16 11 C 0.43 10.03 6.99 -10.99 -0.08 9.96 16 12 O -0.55 -15.22 16.17 -13.29 -0.21 -15.43 16 13 N -0.44 -9.92 2.59 -117.94 -0.31 -10.23 16 14 C -0.32 -8.07 9.42 -14.93 -0.14 -8.21 16 15 H 0.11 3.12 7.31 -52.49 -0.38 2.74 16 16 C 0.04 0.87 4.88 -17.47 -0.09 0.78 16 17 N -0.87 -20.81 9.10 55.50 0.51 -20.31 16 18 Si 0.93 19.20 29.63 -169.99 -5.04 14.16 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 C 0.21 3.97 4.82 -6.83 -0.03 3.93 16 23 C 0.25 5.03 10.63 -20.74 -0.22 4.81 16 24 N -0.47 -10.05 18.31 42.18 0.77 -9.28 16 25 C -0.15 -2.41 5.13 -26.40 -0.14 -2.55 16 26 C -0.08 -1.11 9.61 -39.17 -0.38 -1.48 16 27 C -0.12 -1.48 9.68 -39.64 -0.38 -1.87 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.13 1.84 7.84 -52.49 -0.41 1.43 16 33 H 0.28 6.38 8.31 -40.82 -0.34 6.04 16 34 H 0.13 2.50 6.38 -51.93 -0.33 2.17 16 35 H 0.08 1.13 6.10 -51.93 -0.32 0.81 16 36 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.11 1.99 4.47 -51.93 -0.23 1.75 16 38 H 0.13 1.84 7.37 -52.49 -0.39 1.45 16 39 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -32.29 337.10 -6.96 -39.25 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.09 Total: 4.61 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -3.74 Total: 0.90 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 1.40 Total: -44.82 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.57 Total: -19.19 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.04 Total: 14.16 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.29 -6.96 -39.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889039738.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.701 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds