Wall clock time and date at job start Tue Mar 31 2020 10:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38353 * 119.84808 * 2 1 4 4 C 1.37960 * 120.14835 * 180.23853 * 3 2 1 5 5 C 1.39608 * 119.84787 * 359.51669 * 4 3 2 6 6 C 1.47643 * 120.14710 * 180.27884 * 5 4 3 7 7 N 1.29079 * 125.86920 * 0.02562 * 6 5 4 8 8 O 1.41387 * 112.87600 * 179.64715 * 7 6 5 9 9 C 1.44206 * 107.59417 * 17.49590 * 8 7 6 10 10 H 1.09001 * 110.97163 * 216.48153 * 9 8 7 11 11 C 1.50700 * 110.96933 * 92.74855 * 9 8 7 12 12 O 1.21292 * 120.00102 * 356.45654 * 11 9 8 13 13 N 1.34777 * 119.99666 * 176.45541 * 11 9 8 14 14 C 1.37104 * 119.99838 * 180.02562 * 13 11 9 15 15 H 1.08002 * 119.99920 * 5.60991 * 14 13 11 16 16 C 1.38946 * 119.99872 * 185.62053 * 14 13 11 17 17 N 1.31408 * 120.00452 * 27.21813 * 16 14 13 18 18 Si 1.86802 * 119.99932 * 207.22314 * 16 14 13 19 19 H 1.48503 * 109.47478 * 89.99674 * 18 16 14 20 20 H 1.48501 * 109.47328 * 209.99898 * 18 16 14 21 21 H 1.48503 * 109.46845 * 330.00081 * 18 16 14 22 22 C 1.46500 * 120.00352 * 359.97438 * 13 11 9 23 23 C 1.47194 * 109.46833 * 92.92029 * 22 13 11 24 24 N 6.43927 * 135.53962 * 200.12042 * 2 1 3 25 25 C 1.51692 * 125.86130 * 179.71315 * 6 5 4 26 26 C 1.39612 * 119.70356 * 0.24968 * 5 4 3 27 27 C 1.37949 * 119.84490 * 0.02562 * 26 5 4 28 28 H 1.09001 * 109.46684 * 270.22650 * 1 2 3 29 29 H 1.08993 * 109.47348 * 30.22462 * 1 2 3 30 30 H 1.09001 * 109.47342 * 150.23013 * 1 2 3 31 31 H 1.08000 * 119.93177 * 0.02575 * 3 2 1 32 32 H 1.07998 * 120.07323 * 179.79294 * 4 3 2 33 33 H 0.97006 * 120.00218 * 180.02562 * 17 16 14 34 34 H 1.08997 * 109.47023 * 212.92306 * 22 13 11 35 35 H 1.08997 * 109.46670 * 332.92114 * 22 13 11 36 36 H 1.09000 * 110.79723 * 282.90231 * 25 6 5 37 37 H 1.09001 * 110.79631 * 46.37981 * 25 6 5 38 38 H 1.07994 * 120.07556 * 180.02562 * 26 5 4 39 39 H 1.08007 * 119.92266 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2000 0.0000 4 6 3.5752 1.2072 -0.0050 5 6 4.2764 0.0000 0.0002 6 6 5.7528 0.0001 0.0012 7 7 6.5091 1.0461 -0.0020 8 8 7.8867 0.7283 0.0080 9 6 8.0191 -0.6500 -0.3947 10 1 8.8234 -1.1410 0.1530 11 6 8.2381 -0.7587 -1.8818 12 8 8.2175 0.2383 -2.5723 13 7 8.4570 -1.9637 -2.4443 14 6 8.6568 -2.0626 -3.7971 15 1 8.7292 -1.1687 -4.3990 16 6 8.7659 -3.3127 -4.3937 17 7 8.1781 -4.3542 -3.8492 18 14 9.7482 -3.5128 -5.9699 19 1 11.1615 -3.8237 -5.6364 20 1 9.1739 -4.6215 -6.7738 21 1 9.6903 -2.2522 -6.7527 22 6 8.4825 -3.1678 -1.6102 23 6 7.1399 -3.7701 -1.5769 24 7 6.1029 -4.2349 -1.5515 25 6 6.6415 -1.2292 0.0127 26 6 3.5752 -1.2072 0.0051 27 6 2.1957 -1.2000 0.0043 28 1 -0.3633 0.0041 1.0277 29 1 -0.3634 0.8879 -0.5173 30 1 -0.3634 -0.8920 -0.5103 31 1 1.6520 2.1332 0.0004 32 1 4.1114 2.1447 -0.0083 33 1 8.2546 -5.2270 -4.2656 34 1 9.1915 -3.8833 -2.0267 35 1 8.7868 -2.9021 -0.5979 36 1 6.6832 -1.6672 1.0099 37 1 6.2990 -1.9612 -0.7187 38 1 4.1115 -2.1446 0.0096 39 1 1.6520 -2.1332 0.0076 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889039738.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:16 Heat of formation + Delta-G solvation = 39.761331 kcal Electronic energy + Delta-G solvation = -25598.296808 eV Core-core repulsion = 21894.183882 eV Total energy + Delta-G solvation = -3704.112926 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91278 -40.39464 -39.61726 -37.69209 -36.19179 -35.19422 -34.03456 -32.61449 -32.30650 -31.63573 -29.24087 -28.00792 -27.27524 -25.15321 -23.44757 -23.32214 -21.54835 -20.70074 -19.93396 -18.76750 -18.19464 -17.90068 -17.05951 -16.77589 -16.40752 -16.18020 -16.03163 -15.69285 -15.47619 -15.10516 -14.75390 -14.70685 -14.48173 -14.22707 -14.14507 -13.96375 -13.58260 -13.43950 -13.22524 -13.12115 -12.94710 -12.92269 -12.82219 -12.35242 -12.30989 -12.20402 -12.14300 -12.11771 -11.71809 -11.36536 -11.17132 -10.29084 -10.10557 -10.00856 -9.41503 -8.53059 -5.99150 -0.36756 0.36923 1.14526 1.29596 1.45704 1.54618 1.64270 1.84734 2.06573 2.24146 2.32089 2.74751 2.82306 2.88041 2.91580 3.30655 3.33940 3.57887 3.72795 3.87449 3.92810 3.97305 4.01672 4.35134 4.36528 4.37043 4.42776 4.50201 4.60785 4.78284 4.82770 4.85841 4.87245 5.04943 5.23778 5.36399 5.38594 5.42006 5.56826 5.84885 5.92572 6.20868 6.32440 6.97061 7.01829 7.21578 7.77449 8.49572 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.015828 B = 0.004150 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.637539 B = 6746.166108 C = 7478.262124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.064 4.064 3 C -0.126 4.126 4 C -0.088 4.088 5 C -0.073 4.073 6 C 0.127 3.873 7 N -0.312 5.312 8 O -0.190 6.190 9 C 0.035 3.965 10 H 0.180 0.820 11 C 0.422 3.578 12 O -0.611 6.611 13 N -0.439 5.439 14 C -0.354 4.354 15 H 0.077 0.923 16 C 0.020 3.980 17 N -0.875 5.875 18 Si 0.982 3.018 19 H -0.257 1.257 20 H -0.280 1.280 21 H -0.283 1.283 22 C 0.210 3.790 23 C 0.256 3.744 24 N -0.490 5.490 25 C -0.140 4.140 26 C -0.085 4.085 27 C -0.128 4.128 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.155 0.845 32 H 0.125 0.875 33 H 0.281 0.719 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.154 0.846 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.159 0.002 11.925 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.065 4.065 3 C -0.144 4.144 4 C -0.108 4.108 5 C -0.074 4.074 6 C -0.062 4.062 7 N -0.054 5.054 8 O -0.207 6.207 9 C -0.027 4.027 10 H 0.196 0.804 11 C 0.211 3.789 12 O -0.496 6.496 13 N -0.160 5.160 14 C -0.480 4.480 15 H 0.095 0.905 16 C -0.185 4.185 17 N -0.513 5.513 18 Si 0.806 3.194 19 H -0.182 1.182 20 H -0.206 1.206 21 H -0.209 1.209 22 C 0.084 3.916 23 C -0.061 4.061 24 N -0.171 5.171 25 C -0.180 4.180 26 C -0.105 4.105 27 C -0.145 4.145 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.172 0.828 32 H 0.143 0.857 33 H 0.091 0.909 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.172 0.828 37 H 0.113 0.887 38 H 0.145 0.855 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.400 0.825 11.626 15.621 hybrid contribution 1.256 -0.848 -1.469 2.111 sum -9.144 -0.023 10.157 13.667 Atomic orbital electron populations 1.20920 0.88264 1.04118 1.03816 1.20537 0.98196 0.92422 0.95375 1.21291 0.92740 0.99397 1.00945 1.21442 0.95404 0.96847 0.97139 1.17956 0.86474 0.95579 1.07420 1.24647 0.95193 0.92858 0.93459 1.78293 0.89196 1.23042 1.14879 1.91198 1.16155 1.27565 1.85765 1.23800 1.01109 0.84714 0.93046 0.80350 1.21001 0.83334 0.83754 0.90776 1.90556 1.56442 1.37595 1.65028 1.43827 1.60701 1.04185 1.07258 1.19568 1.50766 0.94058 0.83653 0.90490 1.25748 0.96254 0.94119 1.02342 1.69925 1.36882 1.01589 1.42863 0.85105 0.79373 0.77358 0.77519 1.18154 1.20583 1.20856 1.19323 0.87655 0.87669 0.96955 1.29390 0.94860 0.92087 0.89722 1.80941 1.13368 1.10338 1.12484 1.23259 0.90005 0.97904 1.06797 1.21368 0.95420 0.96405 0.97356 1.21281 0.92945 0.99375 1.00950 0.89205 0.90157 0.90427 0.82783 0.85721 0.90891 0.85184 0.84325 0.82846 0.88710 0.85506 0.83182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.00 71.24 0.71 -0.68 16 2 C -0.06 -1.26 5.89 -19.81 -0.12 -1.38 16 3 C -0.13 -2.72 9.68 22.23 0.22 -2.50 16 4 C -0.09 -2.49 9.69 22.53 0.22 -2.27 16 5 C -0.07 -2.30 5.87 -20.13 -0.12 -2.41 16 6 C 0.13 4.55 7.15 45.77 0.33 4.88 16 7 N -0.31 -12.72 12.12 -42.23 -0.51 -13.24 16 8 O -0.19 -7.89 11.82 -20.30 -0.24 -8.13 16 9 C 0.04 1.26 3.21 30.50 0.10 1.35 16 10 H 0.18 4.41 7.06 -2.39 -0.02 4.39 16 11 C 0.42 19.92 6.99 87.66 0.61 20.54 16 12 O -0.61 -35.67 16.17 14.94 0.24 -35.43 16 13 N -0.44 -20.10 2.59 -645.43 -1.67 -21.78 16 14 C -0.35 -18.48 9.42 84.04 0.79 -17.69 16 15 H 0.08 4.52 7.31 -2.91 -0.02 4.50 16 16 C 0.02 0.93 4.88 84.93 0.41 1.34 16 17 N -0.88 -40.96 9.10 21.66 0.20 -40.76 16 18 Si 0.98 39.23 29.63 68.60 2.03 41.27 16 19 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 20 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 22 C 0.21 7.45 4.82 84.57 0.41 7.86 16 23 C 0.26 10.04 10.63 89.43 0.95 10.99 16 24 N -0.49 -20.52 18.31 20.01 0.37 -20.15 16 25 C -0.14 -4.41 5.13 30.81 0.16 -4.26 16 26 C -0.09 -2.36 9.61 22.53 0.22 -2.14 16 27 C -0.13 -2.84 9.68 22.23 0.22 -2.63 16 28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 30 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.12 3.61 7.84 -2.91 -0.02 3.59 16 33 H 0.28 12.53 8.31 -92.70 -0.77 11.76 16 34 H 0.13 4.70 6.38 -2.39 -0.02 4.69 16 35 H 0.14 3.28 6.10 -2.39 -0.01 3.27 16 36 H 0.15 3.40 8.14 -2.39 -0.02 3.38 16 37 H 0.09 3.35 4.47 -2.39 -0.01 3.34 16 38 H 0.13 3.50 7.37 -2.91 -0.02 3.48 16 39 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -74.48 337.10 6.62 -67.85 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 1.10 Total: 19.37 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 5.10 Total: 10.99 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -1.62 Total: -95.93 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: 0.00 Total: -43.56 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.27 kcal Total: -74.48 6.62 -67.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889039738.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.616 kcal (2) G-P(sol) polarization free energy of solvation -74.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds