Wall clock time and date at job start Tue Mar 31 2020 10:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31329 * 1 3 3 Si 1.86801 * 120.00161 * 2 1 4 4 H 1.48493 * 109.46919 * 275.08790 * 3 2 1 5 5 H 1.48501 * 109.47007 * 35.08974 * 3 2 1 6 6 H 1.48500 * 109.46955 * 155.08598 * 3 2 1 7 7 C 1.39038 * 119.99642 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00456 * 4.35130 * 7 2 1 9 9 N 1.36939 * 119.99739 * 184.35208 * 7 2 1 10 10 C 1.34769 * 119.99834 * 125.32229 * 9 7 2 11 11 O 1.21534 * 120.00100 * 186.40308 * 10 9 7 12 12 C 1.48133 * 120.00354 * 6.39937 * 10 9 7 13 13 N 1.31588 * 127.16452 * 355.05014 * 12 10 9 14 14 O 1.21434 * 111.50286 * 179.97438 * 13 12 10 15 15 C 1.33205 * 111.58889 * 359.96739 * 14 13 12 16 16 C 1.35338 * 106.66043 * 359.82478 * 15 14 13 17 17 C 1.50067 * 124.94502 * 179.44175 * 16 15 14 18 18 C 1.53549 * 108.29491 * 344.45453 * 17 16 15 19 19 C 1.53104 * 109.50640 * 48.96346 * 18 17 16 20 20 C 1.50609 * 129.57968 * 180.18208 * 15 14 13 21 21 C 1.39359 * 119.99802 * 305.32421 * 9 7 2 22 22 C 1.39083 * 119.69653 * 180.72391 * 21 9 7 23 23 C 1.38378 * 119.09503 * 179.74136 * 22 21 9 24 24 C 1.38822 * 118.49830 * 0.47685 * 23 22 21 25 25 C 1.38159 * 119.30670 * 359.52555 * 24 23 22 26 26 N 1.31874 * 120.85616 * 0.22771 * 25 24 23 27 27 H 0.97000 * 119.99990 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.86350 * 224.64343 * 17 16 15 29 29 H 1.09004 * 109.53727 * 104.07447 * 17 16 15 30 30 H 1.09004 * 109.45995 * 288.95785 * 18 17 16 31 31 H 1.08999 * 109.46510 * 168.97735 * 18 17 16 32 32 H 1.08998 * 109.43276 * 170.07503 * 19 18 17 33 33 H 1.09002 * 109.38348 * 50.20436 * 19 18 17 34 34 H 1.09002 * 109.69177 * 282.91682 * 20 15 14 35 35 H 1.08993 * 109.69765 * 43.46842 * 20 15 14 36 36 H 1.07998 * 120.45194 * 359.97438 * 22 21 9 37 37 H 1.08002 * 120.75184 * 180.26950 * 23 22 21 38 38 H 1.07994 * 120.34737 * 179.80020 * 24 23 22 39 39 H 1.08008 * 119.56792 * 180.25788 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.3873 2.1084 -1.3945 5 1 1.5027 2.6192 0.8049 6 1 3.5945 1.4114 0.5898 7 6 2.0084 -1.2041 0.0005 8 1 1.4708 -2.1381 -0.0700 9 7 3.3748 -1.2058 0.0905 10 6 3.9854 -1.9167 1.0591 11 8 5.1877 -1.8271 1.2125 12 6 3.1912 -2.8073 1.9368 13 7 1.8825 -2.9433 1.9563 14 8 1.5316 -3.7535 2.7899 15 6 2.5729 -4.2691 3.4412 16 6 3.6806 -3.6904 2.9218 17 6 5.0858 -3.9684 3.3691 18 6 5.0269 -4.6847 4.7260 19 6 4.0325 -5.8463 4.6482 20 6 2.6034 -5.2984 4.5403 21 6 4.1339 -0.4724 -0.8194 22 6 5.5219 -0.4907 -0.7315 23 6 6.2636 0.2378 -1.6448 24 6 5.5889 0.9702 -2.6120 25 6 4.2079 0.9426 -2.6403 26 7 3.5274 0.2350 -1.7599 27 1 -0.4850 0.8400 -0.0004 28 1 5.6341 -3.0319 3.4712 29 1 5.5816 -4.6067 2.6377 30 1 4.7047 -3.9816 5.4941 31 1 6.0155 -5.0690 4.9770 32 1 4.1192 -6.4586 5.5457 33 1 4.2547 -6.4546 3.7714 34 1 2.3150 -4.8362 5.4844 35 1 1.9153 -6.1096 4.3030 36 1 6.0141 -1.0686 0.0367 37 1 7.3428 0.2392 -1.6039 38 1 6.1380 1.5520 -3.3376 39 1 3.6789 1.5076 -3.3937 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892464696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:07 Heat of formation + Delta-G solvation = 103.544912 kcal Electronic energy + Delta-G solvation = -26390.720601 eV Core-core repulsion = 22689.373539 eV Total energy + Delta-G solvation = -3701.347062 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.46048 -40.46111 -38.40804 -37.48544 -35.31384 -33.36465 -32.08277 -31.77837 -30.68439 -30.19063 -29.44069 -25.45888 -24.74120 -23.93191 -22.87630 -22.41820 -21.82650 -19.99462 -19.01170 -18.47565 -17.24438 -16.84998 -16.44859 -15.90305 -15.70958 -15.08726 -14.90368 -14.52194 -14.16307 -13.91720 -13.82299 -13.74870 -13.40948 -13.02815 -12.87885 -12.76862 -12.54745 -12.30642 -12.25730 -11.62535 -11.26631 -11.03298 -10.93227 -10.83093 -10.60148 -10.45968 -10.05522 -9.63975 -9.51503 -9.15164 -9.02942 -8.72047 -8.66031 -8.36584 -7.41674 -6.32739 -4.30622 1.48967 1.85558 1.93575 2.31392 3.31984 3.34703 3.38218 3.42973 3.64617 3.80321 4.28454 4.58952 4.68556 4.71717 4.80617 4.86095 5.08923 5.17887 5.23453 5.29945 5.30769 5.38505 5.49455 5.55752 5.65600 5.69856 5.79767 5.85865 5.94440 5.97892 6.01948 6.08653 6.22833 6.26361 6.45530 6.55466 6.59457 6.87274 6.99102 7.60753 7.79460 8.19096 8.45974 8.73788 8.92533 9.19108 9.28311 10.69418 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.005332 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.441618 B = 5250.348888 C = 6439.871765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.102 3.898 3 Si 0.921 3.079 4 H -0.260 1.260 5 H -0.311 1.311 6 H -0.285 1.285 7 C -0.356 4.356 8 H 0.120 0.880 9 N -0.377 5.377 10 C 0.578 3.422 11 O -0.543 6.543 12 C -0.006 4.006 13 N -0.267 5.267 14 O 0.120 5.880 15 C -0.066 4.066 16 C -0.158 4.158 17 C -0.041 4.041 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.031 4.031 21 C 0.352 3.648 22 C -0.229 4.229 23 C -0.063 4.063 24 C -0.228 4.228 25 C 0.122 3.878 26 N -0.493 5.493 27 H 0.276 0.724 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.191 0.809 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.211 -7.664 6.455 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.109 4.109 3 Si 0.754 3.246 4 H -0.186 1.186 5 H -0.242 1.242 6 H -0.212 1.212 7 C -0.483 4.483 8 H 0.137 0.863 9 N -0.087 5.087 10 C 0.369 3.631 11 O -0.425 6.425 12 C -0.164 4.164 13 N 0.034 4.966 14 O 0.044 5.956 15 C -0.129 4.129 16 C -0.163 4.163 17 C -0.079 4.079 18 C -0.159 4.159 19 C -0.155 4.155 20 C -0.069 4.069 21 C 0.125 3.875 22 C -0.251 4.251 23 C -0.089 4.089 24 C -0.250 4.250 25 C -0.036 4.036 26 N -0.210 5.210 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.207 0.793 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.687 -7.008 5.820 11.919 hybrid contribution 1.597 0.959 -0.102 1.866 sum 9.284 -6.049 5.718 12.469 Atomic orbital electron populations 1.69635 1.06407 1.28301 1.44141 1.25303 0.94991 0.99014 0.91578 0.86120 0.78539 0.82059 0.77901 1.18629 1.24164 1.21166 1.19122 0.76383 0.96673 1.56116 0.86262 1.41195 1.08071 1.38375 1.21032 1.17321 0.85534 0.81081 0.79117 1.90248 1.14185 1.67741 1.70306 1.22427 0.90412 1.02096 1.01432 1.75442 1.14001 1.03212 1.03941 1.84882 1.33652 1.40612 1.36447 1.23976 0.86543 1.01864 1.00553 1.20536 0.97813 0.99376 0.98553 1.19926 0.90455 1.01560 0.95943 1.21704 0.99445 0.97378 0.97421 1.21625 0.93130 0.98009 1.02698 1.20133 0.98654 0.94445 0.93667 1.19024 0.88162 0.91765 0.88591 1.23637 0.93576 1.03938 1.03969 1.21465 0.99799 0.94261 0.93380 1.21849 0.95729 1.05058 1.02324 1.22357 0.91277 0.94792 0.95174 1.66831 1.40256 1.09085 1.04821 0.91431 0.89421 0.90414 0.91511 0.91074 0.90577 0.91206 0.89306 0.89356 0.79270 0.85514 0.85772 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.27 13.95 55.50 0.77 -24.50 16 2 C 0.10 2.96 5.33 -17.47 -0.09 2.87 16 3 Si 0.92 24.45 23.91 -169.99 -4.06 20.38 16 4 H -0.26 -6.58 5.83 56.52 0.33 -6.25 16 5 H -0.31 -8.22 7.11 56.52 0.40 -7.82 16 6 H -0.29 -7.87 6.29 56.52 0.36 -7.52 16 7 C -0.36 -10.17 7.72 -14.97 -0.12 -10.29 16 8 H 0.12 3.62 6.82 -52.49 -0.36 3.26 16 9 N -0.38 -9.95 2.33 -61.62 -0.14 -10.10 16 10 C 0.58 14.07 7.58 -12.20 -0.09 13.98 16 11 O -0.54 -12.57 12.41 5.34 0.07 -12.51 16 12 C -0.01 -0.13 6.90 -82.84 -0.57 -0.70 16 13 N -0.27 -6.17 9.28 33.28 0.31 -5.86 16 14 O 0.12 2.30 11.18 19.15 0.21 2.52 16 15 C -0.07 -1.02 7.38 -35.39 -0.26 -1.28 16 16 C -0.16 -2.77 6.05 -104.90 -0.63 -3.40 16 17 C -0.04 -0.58 5.69 -27.90 -0.16 -0.74 16 18 C -0.12 -1.21 5.92 -26.39 -0.16 -1.37 16 19 C -0.12 -1.01 5.88 -26.45 -0.16 -1.16 16 20 C -0.03 -0.31 6.31 -27.70 -0.17 -0.48 16 21 C 0.35 8.79 4.97 -154.70 -0.77 8.02 16 22 C -0.23 -4.99 9.07 -39.22 -0.36 -5.34 16 23 C -0.06 -1.12 10.17 -39.31 -0.40 -1.52 16 24 C -0.23 -3.90 10.11 -39.39 -0.40 -4.30 16 25 C 0.12 2.45 9.97 -17.56 -0.18 2.27 16 26 N -0.49 -12.12 5.41 -12.35 -0.07 -12.19 16 27 H 0.28 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.09 1.32 7.76 -51.93 -0.40 0.92 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.19 4.13 4.50 -56.54 -0.25 3.88 16 37 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.15 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 315.23 15.07 4.75 4.75 Total: -1.00 -33.41 315.23 -7.16 -40.58 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.49 Total: 0.37 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -4.51 Total: -3.44 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.87 Total: -52.64 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.28 Total: -9.99 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -4.06 Total: 20.38 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.41 -7.16 -40.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.120 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds