Wall clock time and date at job start Tue Mar 31 2020 10:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31329 * 1 3 3 Si 1.86801 * 120.00161 * 2 1 4 4 H 1.48493 * 109.46919 * 275.08790 * 3 2 1 5 5 H 1.48501 * 109.47007 * 35.08974 * 3 2 1 6 6 H 1.48500 * 109.46955 * 155.08598 * 3 2 1 7 7 C 1.39038 * 119.99642 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00456 * 4.35130 * 7 2 1 9 9 N 1.36939 * 119.99739 * 184.35208 * 7 2 1 10 10 C 1.34769 * 119.99834 * 125.32229 * 9 7 2 11 11 O 1.21534 * 120.00100 * 186.40308 * 10 9 7 12 12 C 1.48133 * 120.00354 * 6.39937 * 10 9 7 13 13 N 1.31588 * 127.16452 * 355.05014 * 12 10 9 14 14 O 1.21434 * 111.50286 * 179.97438 * 13 12 10 15 15 C 1.33205 * 111.58889 * 359.96739 * 14 13 12 16 16 C 1.35338 * 106.66043 * 359.82478 * 15 14 13 17 17 C 1.50067 * 124.94502 * 179.44175 * 16 15 14 18 18 C 1.53549 * 108.29491 * 344.45453 * 17 16 15 19 19 C 1.53104 * 109.50640 * 48.96346 * 18 17 16 20 20 C 1.50609 * 129.57968 * 180.18208 * 15 14 13 21 21 C 1.39359 * 119.99802 * 305.32421 * 9 7 2 22 22 C 1.39083 * 119.69653 * 180.72391 * 21 9 7 23 23 C 1.38378 * 119.09503 * 179.74136 * 22 21 9 24 24 C 1.38822 * 118.49830 * 0.47685 * 23 22 21 25 25 C 1.38159 * 119.30670 * 359.52555 * 24 23 22 26 26 N 1.31874 * 120.85616 * 0.22771 * 25 24 23 27 27 H 0.97000 * 119.99990 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.86350 * 224.64343 * 17 16 15 29 29 H 1.09004 * 109.53727 * 104.07447 * 17 16 15 30 30 H 1.09004 * 109.45995 * 288.95785 * 18 17 16 31 31 H 1.08999 * 109.46510 * 168.97735 * 18 17 16 32 32 H 1.08998 * 109.43276 * 170.07503 * 19 18 17 33 33 H 1.09002 * 109.38348 * 50.20436 * 19 18 17 34 34 H 1.09002 * 109.69177 * 282.91682 * 20 15 14 35 35 H 1.08993 * 109.69765 * 43.46842 * 20 15 14 36 36 H 1.07998 * 120.45194 * 359.97438 * 22 21 9 37 37 H 1.08002 * 120.75184 * 180.26950 * 23 22 21 38 38 H 1.07994 * 120.34737 * 179.80020 * 24 23 22 39 39 H 1.08008 * 119.56792 * 180.25788 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.3873 2.1084 -1.3945 5 1 1.5027 2.6192 0.8049 6 1 3.5945 1.4114 0.5898 7 6 2.0084 -1.2041 0.0005 8 1 1.4708 -2.1381 -0.0700 9 7 3.3748 -1.2058 0.0905 10 6 3.9854 -1.9167 1.0591 11 8 5.1877 -1.8271 1.2125 12 6 3.1912 -2.8073 1.9368 13 7 1.8825 -2.9433 1.9563 14 8 1.5316 -3.7535 2.7899 15 6 2.5729 -4.2691 3.4412 16 6 3.6806 -3.6904 2.9218 17 6 5.0858 -3.9684 3.3691 18 6 5.0269 -4.6847 4.7260 19 6 4.0325 -5.8463 4.6482 20 6 2.6034 -5.2984 4.5403 21 6 4.1339 -0.4724 -0.8194 22 6 5.5219 -0.4907 -0.7315 23 6 6.2636 0.2378 -1.6448 24 6 5.5889 0.9702 -2.6120 25 6 4.2079 0.9426 -2.6403 26 7 3.5274 0.2350 -1.7599 27 1 -0.4850 0.8400 -0.0004 28 1 5.6341 -3.0319 3.4712 29 1 5.5816 -4.6067 2.6377 30 1 4.7047 -3.9816 5.4941 31 1 6.0155 -5.0690 4.9770 32 1 4.1192 -6.4586 5.5457 33 1 4.2547 -6.4546 3.7714 34 1 2.3150 -4.8362 5.4844 35 1 1.9153 -6.1096 4.3030 36 1 6.0141 -1.0686 0.0367 37 1 7.3428 0.2392 -1.6039 38 1 6.1380 1.5520 -3.3376 39 1 3.6789 1.5076 -3.3937 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892464696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:06 Heat of formation + Delta-G solvation = 82.196987 kcal Electronic energy + Delta-G solvation = -26391.646316 eV Core-core repulsion = 22689.373539 eV Total energy + Delta-G solvation = -3702.272778 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.02307 -42.21191 -40.10062 -38.51741 -37.17658 -34.83063 -34.20241 -33.37849 -31.85591 -31.50957 -30.88269 -27.44723 -26.36189 -25.10252 -24.44947 -23.59958 -23.40269 -21.52693 -20.46431 -20.27344 -18.81515 -18.33043 -18.02272 -17.84578 -17.24297 -16.74402 -16.46079 -16.13778 -15.75500 -15.53003 -15.14553 -14.80670 -14.71540 -14.51687 -14.47263 -14.15725 -14.06359 -14.00904 -13.39632 -13.17229 -13.13653 -12.56140 -12.23643 -12.07241 -11.80420 -11.77252 -11.48104 -11.38260 -11.14809 -11.02488 -10.76609 -10.54023 -10.14047 -9.98568 -9.20011 -8.49977 -6.48949 -0.14851 0.27239 0.51097 0.79894 1.19770 1.25705 1.34479 1.84023 2.06039 2.17624 2.22589 2.81861 3.00284 3.12760 3.57202 3.71064 3.77599 3.96663 4.02760 4.09667 4.13502 4.23241 4.33792 4.37246 4.46354 4.50347 4.58415 4.65190 4.91212 4.98278 5.01228 5.07623 5.07865 5.21803 5.26798 5.31373 5.38151 5.42950 5.49346 5.74093 5.86377 6.16095 6.52878 6.90430 7.17694 7.31352 7.36411 8.55020 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.005332 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.441618 B = 5250.348888 C = 6439.871765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.976 3.024 4 H -0.242 1.242 5 H -0.318 1.318 6 H -0.304 1.304 7 C -0.344 4.344 8 H 0.086 0.914 9 N -0.400 5.400 10 C 0.572 3.428 11 O -0.541 6.541 12 C -0.044 4.044 13 N -0.318 5.318 14 O 0.124 5.876 15 C -0.046 4.046 16 C -0.169 4.169 17 C -0.042 4.042 18 C -0.116 4.116 19 C -0.112 4.112 20 C -0.031 4.031 21 C 0.315 3.685 22 C -0.245 4.245 23 C -0.051 4.051 24 C -0.199 4.199 25 C 0.102 3.898 26 N -0.536 5.536 27 H 0.278 0.722 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.184 0.816 37 H 0.175 0.825 38 H 0.179 0.821 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.101 -8.148 7.076 16.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.809 3.191 4 H -0.167 1.167 5 H -0.249 1.249 6 H -0.231 1.231 7 C -0.471 4.471 8 H 0.104 0.896 9 N -0.112 5.112 10 C 0.363 3.637 11 O -0.422 6.422 12 C -0.200 4.200 13 N -0.016 5.016 14 O 0.046 5.954 15 C -0.110 4.110 16 C -0.174 4.174 17 C -0.079 4.079 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.069 4.069 21 C 0.089 3.911 22 C -0.267 4.267 23 C -0.077 4.077 24 C -0.219 4.219 25 C -0.055 4.055 26 N -0.254 5.254 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.133 0.867 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.200 0.800 37 H 0.193 0.807 38 H 0.197 0.803 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 10.604 -7.476 6.399 14.467 hybrid contribution 0.876 0.988 -0.336 1.362 sum 11.481 -6.488 6.064 14.514 Atomic orbital electron populations 1.69707 1.07384 1.28913 1.46855 1.25845 0.95484 1.01316 0.91759 0.85280 0.76234 0.79262 0.78368 1.16667 1.24892 1.23133 1.18725 0.77752 0.95341 1.55308 0.89628 1.41268 1.07391 1.39986 1.22559 1.17640 0.86007 0.80873 0.79174 1.90221 1.13762 1.67782 1.70442 1.22677 0.90738 1.03597 1.02964 1.75408 1.14962 1.05230 1.06034 1.84800 1.34787 1.39899 1.35911 1.25091 0.84665 1.01190 1.00080 1.20992 1.00244 0.98615 0.97581 1.20060 0.87932 1.01318 0.98610 1.21720 1.01581 0.97615 0.94406 1.21686 0.91196 0.97551 1.04539 1.20589 1.00669 0.93492 0.92158 1.19253 0.89326 0.93031 0.89506 1.23666 0.92472 1.05236 1.05350 1.22023 1.01985 0.92077 0.91579 1.22404 0.94585 1.03122 1.01838 1.23056 0.93242 0.94349 0.94860 1.66666 1.42165 1.10519 1.06040 0.91207 0.91278 0.90247 0.91276 0.88491 0.86667 0.91393 0.86872 0.86923 0.80020 0.80734 0.80319 0.80677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.93 13.95 21.68 0.30 -55.63 16 2 C 0.06 3.80 5.33 84.96 0.45 4.26 16 3 Si 0.98 52.65 23.91 68.60 1.64 54.29 16 4 H -0.24 -12.01 5.83 99.48 0.58 -11.43 16 5 H -0.32 -16.94 7.11 99.48 0.71 -16.24 16 6 H -0.30 -17.14 6.29 99.48 0.63 -16.51 16 7 C -0.34 -20.99 7.72 84.09 0.65 -20.34 16 8 H 0.09 5.68 6.82 -2.91 -0.02 5.66 16 9 N -0.40 -22.33 2.33 -467.14 -1.09 -23.42 16 10 C 0.57 29.52 7.58 86.87 0.66 30.18 16 11 O -0.54 -26.15 12.41 -3.82 -0.05 -26.20 16 12 C -0.04 -2.08 6.90 42.50 0.29 -1.78 16 13 N -0.32 -15.74 9.28 -48.95 -0.45 -16.20 16 14 O 0.12 4.95 11.18 78.55 0.88 5.83 16 15 C -0.05 -1.41 7.38 24.99 0.18 -1.23 16 16 C -0.17 -6.04 6.05 -20.04 -0.12 -6.16 16 17 C -0.04 -1.14 5.69 29.83 0.17 -0.97 16 18 C -0.12 -1.96 5.92 30.81 0.18 -1.78 16 19 C -0.11 -1.47 5.88 30.77 0.18 -1.29 16 20 C -0.03 -0.53 6.31 29.96 0.19 -0.34 16 21 C 0.31 16.07 4.97 132.93 0.66 16.73 16 22 C -0.25 -10.56 9.07 22.51 0.20 -10.36 16 23 C -0.05 -1.62 10.17 22.44 0.23 -1.40 16 24 C -0.20 -5.88 10.11 22.39 0.23 -5.65 16 25 C 0.10 3.84 9.97 84.67 0.84 4.68 16 26 N -0.54 -26.46 5.41 -192.98 -1.04 -27.50 16 27 H 0.28 16.24 8.31 -92.71 -0.77 15.47 16 28 H 0.07 2.13 7.76 -2.39 -0.02 2.11 16 29 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.07 1.16 8.12 -2.38 -0.02 1.14 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.96 8.12 -2.39 -0.02 0.94 16 34 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.18 8.03 4.50 -67.14 -0.30 7.72 16 37 H 0.18 3.88 8.06 -2.91 -0.02 3.86 16 38 H 0.18 3.39 8.06 -2.91 -0.02 3.37 16 39 H 0.18 5.42 8.06 -2.91 -0.02 5.39 16 Total: -1.00 -81.71 315.23 5.79 -75.92 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.60 Total: 8.35 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 5.00 Total: 4.55 kcal Atomic # 7 Polarization: -120.46 SS G_CDS: -2.28 Total: -122.75 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.83 Total: -20.37 kcal Atomic # 14 Polarization: 52.65 SS G_CDS: 1.64 Total: 54.29 kcal Total: -81.71 5.79 -75.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.119 kcal (2) G-P(sol) polarization free energy of solvation -81.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds