Wall clock time and date at job start Tue Mar 31 2020 10:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37976 * 120.08066 * 2 1 4 4 C 1.38334 * 120.15269 * 180.29715 * 3 2 1 5 5 C 1.38379 * 120.30306 * 359.69840 * 4 3 2 6 6 C 1.37934 * 120.14475 * 0.02562 * 5 4 3 7 7 C 1.39592 * 120.07723 * 179.74193 * 2 1 3 8 8 C 1.47645 * 120.14835 * 0.02562 * 7 2 1 9 9 N 1.29086 * 125.86475 * 359.71917 * 8 7 2 10 10 O 1.41387 * 112.87646 * 179.68009 * 9 8 7 11 11 C 1.44731 * 107.62558 * 17.53373 * 10 9 8 12 12 H 1.08995 * 111.03554 * 92.57602 * 11 10 9 13 13 C 1.50698 * 111.13331 * 216.51430 * 11 10 9 14 14 O 1.21297 * 120.00339 * 1.30526 * 13 11 10 15 15 N 1.34782 * 119.99977 * 181.30836 * 13 11 10 16 16 C 1.37099 * 119.99830 * 184.69362 * 15 13 11 17 17 H 1.07996 * 120.00366 * 22.26769 * 16 15 13 18 18 C 1.38948 * 119.99616 * 202.26744 * 16 15 13 19 19 N 1.31415 * 120.00459 * 17.34727 * 18 16 15 20 20 Si 1.86800 * 119.99813 * 197.34932 * 18 16 15 21 21 H 1.48507 * 109.47239 * 89.99896 * 20 18 16 22 22 H 1.48496 * 109.47263 * 209.99856 * 20 18 16 23 23 H 1.48501 * 109.46967 * 329.99935 * 20 18 16 24 24 C 1.46501 * 119.99909 * 4.69318 * 15 13 11 25 25 C 1.47204 * 109.47167 * 83.98004 * 24 15 13 26 26 N 8.20321 * 92.42519 * 156.40369 * 2 1 3 27 27 C 1.51692 * 125.86933 * 179.72249 * 8 7 2 28 28 H 1.08996 * 109.47496 * 270.25809 * 1 2 3 29 29 H 1.09006 * 109.46877 * 30.25743 * 1 2 3 30 30 H 1.09006 * 109.47145 * 150.25362 * 1 2 3 31 31 H 1.08003 * 119.91833 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.84760 * 179.72157 * 4 3 2 33 33 H 1.07998 * 119.92781 * 180.02562 * 5 4 3 34 34 H 1.08007 * 120.07648 * 180.02562 * 6 5 4 35 35 H 0.96995 * 120.00173 * 180.02562 * 19 18 16 36 36 H 1.08994 * 109.46933 * 203.98238 * 24 15 13 37 37 H 1.09003 * 109.47106 * 323.97981 * 24 15 13 38 38 H 1.08996 * 110.78833 * 282.86960 * 27 8 7 39 39 H 1.09001 * 110.78978 * 46.14977 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5818 1.1957 -0.0062 5 6 4.2816 0.0019 -0.0062 6 6 3.6028 -1.1989 -0.0005 7 6 2.2066 -1.2079 0.0054 8 6 1.4734 -2.4895 0.0106 9 7 0.1898 -2.6264 0.0159 10 8 -0.2186 -3.9800 0.0127 11 6 0.9159 -4.7810 0.4202 12 1 0.9086 -4.9506 1.4969 13 6 0.9558 -6.0877 -0.3294 14 8 0.1134 -6.3323 -1.1671 15 7 1.9275 -6.9847 -0.0690 16 6 2.0212 -8.1302 -0.8164 17 1 1.5863 -8.1676 -1.8042 18 6 2.6758 -9.2430 -0.3029 19 7 2.9031 -9.3342 0.9883 20 14 3.2330 -10.6098 -1.4479 21 1 4.6115 -10.3269 -1.9225 22 1 3.2160 -11.9036 -0.7194 23 1 2.3144 -10.6852 -2.6123 24 6 2.8836 -6.7355 1.0128 25 6 2.3020 -7.1733 2.2922 26 7 1.8541 -7.5106 3.2807 27 6 2.0990 -3.8714 0.0108 28 1 -0.3634 0.0046 1.0276 29 1 -0.3633 0.8877 -0.5179 30 1 -0.3634 -0.8923 -0.5099 31 1 1.6585 2.1293 0.0004 32 1 4.1182 2.1331 -0.0107 33 1 5.3615 0.0103 -0.0106 34 1 4.1501 -2.1301 0.0000 35 1 3.3603 -10.1109 1.3466 36 1 3.8014 -7.2914 0.8217 37 1 3.1077 -5.6698 1.0613 38 1 2.4615 -4.1321 -0.9835 39 1 2.9044 -3.9313 0.7428 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906479545.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:26 Heat of formation + Delta-G solvation = 62.120942 kcal Electronic energy + Delta-G solvation = -25349.836588 eV Core-core repulsion = 21646.693248 eV Total energy + Delta-G solvation = -3703.143340 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.54060 -39.35422 -38.18674 -35.87431 -34.45138 -33.80449 -32.78471 -32.15195 -30.45178 -30.30895 -27.58418 -27.18812 -25.54512 -23.61810 -23.42785 -21.61128 -20.15790 -19.33854 -18.06038 -17.28506 -16.89895 -16.29058 -16.02534 -15.81974 -15.28299 -15.00532 -14.53942 -14.32378 -14.12146 -13.82481 -13.40905 -13.33632 -13.16778 -13.04995 -12.80784 -12.41331 -12.33721 -12.18452 -12.07428 -11.81074 -11.60080 -11.47849 -11.35593 -11.29355 -11.22391 -10.67952 -10.53513 -10.45143 -10.20897 -9.94855 -9.38115 -8.99078 -8.78293 -8.50532 -8.16236 -6.60084 -4.16422 0.57721 1.14766 2.18114 2.91896 3.04920 3.17536 3.22268 3.40935 3.58026 3.60027 3.87122 3.96676 4.05307 4.34720 4.58607 4.65805 4.70587 4.76519 4.80175 4.82063 4.96375 5.08768 5.13069 5.23593 5.36543 5.47939 5.48946 5.60173 5.68711 5.71116 5.75687 5.82466 5.94790 6.15421 6.21910 6.27999 6.33030 6.45775 6.71964 7.36185 7.40537 7.75977 8.14673 8.64651 8.84710 9.02973 9.54651 10.45794 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019691 B = 0.003496 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.624530 B = 8006.939096 C = 8256.840822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.043 4.043 3 C -0.128 4.128 4 C -0.100 4.100 5 C -0.130 4.130 6 C -0.082 4.082 7 C -0.042 4.042 8 C 0.120 3.880 9 N -0.281 5.281 10 O -0.166 6.166 11 C 0.034 3.966 12 H 0.099 0.901 13 C 0.460 3.540 14 O -0.545 6.545 15 N -0.435 5.435 16 C -0.313 4.313 17 H 0.109 0.891 18 C 0.034 3.966 19 N -0.877 5.877 20 Si 0.933 3.067 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.268 1.268 24 C 0.217 3.783 25 C 0.241 3.759 26 N -0.465 5.465 27 C -0.140 4.140 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.275 0.725 36 H 0.130 0.870 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.797 18.860 -1.047 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.045 4.045 3 C -0.146 4.146 4 C -0.119 4.119 5 C -0.148 4.148 6 C -0.102 4.102 7 C -0.043 4.043 8 C -0.069 4.069 9 N -0.021 5.021 10 O -0.185 6.185 11 C -0.029 4.029 12 H 0.117 0.883 13 C 0.246 3.754 14 O -0.425 6.425 15 N -0.157 5.157 16 C -0.440 4.440 17 H 0.127 0.873 18 C -0.170 4.170 19 N -0.516 5.516 20 Si 0.759 3.241 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.192 1.192 24 C 0.090 3.910 25 C -0.078 4.078 26 N -0.145 5.145 27 C -0.179 4.179 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.086 0.914 36 H 0.147 0.853 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.557 18.425 0.039 19.245 hybrid contribution 1.342 -1.309 -0.540 1.951 sum 6.899 17.115 -0.501 18.460 Atomic orbital electron populations 1.21266 0.90183 1.04479 1.03261 1.20170 0.96834 0.91825 0.95721 1.21007 0.94268 0.97374 1.01917 1.21309 0.94222 0.98318 0.98037 1.21059 1.00187 0.92024 1.01575 1.21282 0.92356 0.99047 0.97475 1.17771 0.92535 0.88564 1.05434 1.24220 0.92362 0.94508 0.95779 1.78376 1.13275 0.98296 1.12161 1.91445 1.30171 1.09473 1.87430 1.23654 0.85961 0.93045 1.00227 0.88328 1.19554 0.83000 0.85622 0.87205 1.90612 1.37741 1.78362 1.35742 1.43513 1.24473 1.18944 1.28813 1.19747 1.36408 0.88887 0.98922 0.87339 1.25363 0.97494 0.98189 0.95955 1.69762 1.40207 1.30916 1.10679 0.85802 0.79145 0.79325 0.79810 1.20008 1.20951 1.19209 1.18834 0.94506 0.98716 0.78951 1.29217 0.93419 0.91300 0.93837 1.80932 1.08644 1.10766 1.14142 1.23066 1.00146 0.88926 1.05812 0.90699 0.91729 0.87961 0.85576 0.85758 0.85357 0.84920 0.91381 0.85259 0.90137 0.86896 0.87203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.18 36.00 0.33 -1.17 16 2 C -0.04 -0.48 5.91 -104.21 -0.62 -1.09 16 3 C -0.13 -1.12 9.69 -39.64 -0.38 -1.50 16 4 C -0.10 -0.76 10.04 -39.49 -0.40 -1.16 16 5 C -0.13 -1.02 10.03 -39.64 -0.40 -1.41 16 6 C -0.08 -0.75 9.61 -39.17 -0.38 -1.13 16 7 C -0.04 -0.49 5.87 -105.03 -0.62 -1.11 16 8 C 0.12 1.69 7.05 -79.42 -0.56 1.13 16 9 N -0.28 -4.77 8.97 35.30 0.32 -4.45 16 10 O -0.17 -3.44 11.86 -30.05 -0.36 -3.79 16 11 C 0.03 0.63 3.29 -26.97 -0.09 0.54 16 12 H 0.10 1.76 7.41 -51.93 -0.38 1.37 16 13 C 0.46 10.57 6.89 -10.98 -0.08 10.50 16 14 O -0.54 -14.93 16.32 -13.14 -0.21 -15.14 16 15 N -0.44 -9.78 2.59 -117.93 -0.31 -10.08 16 16 C -0.31 -7.78 9.24 -14.93 -0.14 -7.92 16 17 H 0.11 2.85 7.48 -52.49 -0.39 2.46 16 18 C 0.03 0.81 4.93 -17.47 -0.09 0.73 16 19 N -0.88 -21.43 9.41 55.50 0.52 -20.91 16 20 Si 0.93 19.05 29.59 -169.99 -5.03 14.02 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 C 0.22 4.02 4.84 -6.83 -0.03 3.99 16 25 C 0.24 5.15 12.85 -20.74 -0.27 4.89 16 26 N -0.46 -10.87 18.54 42.17 0.78 -10.09 16 27 C -0.14 -1.93 4.80 -26.48 -0.13 -2.06 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 30 H 0.10 1.38 5.19 -51.93 -0.27 1.11 16 31 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 32 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.13 0.97 7.37 -52.48 -0.39 0.59 16 35 H 0.28 6.54 8.31 -40.82 -0.34 6.21 16 36 H 0.13 2.40 6.66 -51.93 -0.35 2.05 16 37 H 0.08 1.10 4.71 -51.93 -0.24 0.85 16 38 H 0.11 1.54 7.90 -51.93 -0.41 1.13 16 39 H 0.11 1.11 6.49 -51.93 -0.34 0.77 16 LS Contribution 334.74 15.07 5.04 5.04 Total: -1.00 -32.76 334.74 -7.09 -39.85 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -4.02 Total: 2.33 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -3.83 Total: 3.22 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 1.31 Total: -45.53 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.57 Total: -18.94 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.76 -7.09 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906479545.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.973 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds