Wall clock time and date at job start Tue Mar 31 2020 10:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37976 * 120.08066 * 2 1 4 4 C 1.38334 * 120.15269 * 180.29715 * 3 2 1 5 5 C 1.38379 * 120.30306 * 359.69840 * 4 3 2 6 6 C 1.37934 * 120.14475 * 0.02562 * 5 4 3 7 7 C 1.39592 * 120.07723 * 179.74193 * 2 1 3 8 8 C 1.47645 * 120.14835 * 0.02562 * 7 2 1 9 9 N 1.29086 * 125.86475 * 359.71917 * 8 7 2 10 10 O 1.41387 * 112.87646 * 179.68009 * 9 8 7 11 11 C 1.44731 * 107.62558 * 17.53373 * 10 9 8 12 12 H 1.08995 * 111.03554 * 92.57602 * 11 10 9 13 13 C 1.50698 * 111.13331 * 216.51430 * 11 10 9 14 14 O 1.21297 * 120.00339 * 1.30526 * 13 11 10 15 15 N 1.34782 * 119.99977 * 181.30836 * 13 11 10 16 16 C 1.37099 * 119.99830 * 184.69362 * 15 13 11 17 17 H 1.07996 * 120.00366 * 22.26769 * 16 15 13 18 18 C 1.38948 * 119.99616 * 202.26744 * 16 15 13 19 19 N 1.31415 * 120.00459 * 17.34727 * 18 16 15 20 20 Si 1.86800 * 119.99813 * 197.34932 * 18 16 15 21 21 H 1.48507 * 109.47239 * 89.99896 * 20 18 16 22 22 H 1.48496 * 109.47263 * 209.99856 * 20 18 16 23 23 H 1.48501 * 109.46967 * 329.99935 * 20 18 16 24 24 C 1.46501 * 119.99909 * 4.69318 * 15 13 11 25 25 C 1.47204 * 109.47167 * 83.98004 * 24 15 13 26 26 N 8.20321 * 92.42519 * 156.40369 * 2 1 3 27 27 C 1.51692 * 125.86933 * 179.72249 * 8 7 2 28 28 H 1.08996 * 109.47496 * 270.25809 * 1 2 3 29 29 H 1.09006 * 109.46877 * 30.25743 * 1 2 3 30 30 H 1.09006 * 109.47145 * 150.25362 * 1 2 3 31 31 H 1.08003 * 119.91833 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.84760 * 179.72157 * 4 3 2 33 33 H 1.07998 * 119.92781 * 180.02562 * 5 4 3 34 34 H 1.08007 * 120.07648 * 180.02562 * 6 5 4 35 35 H 0.96995 * 120.00173 * 180.02562 * 19 18 16 36 36 H 1.08994 * 109.46933 * 203.98238 * 24 15 13 37 37 H 1.09003 * 109.47106 * 323.97981 * 24 15 13 38 38 H 1.08996 * 110.78833 * 282.86960 * 27 8 7 39 39 H 1.09001 * 110.78978 * 46.14977 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5818 1.1957 -0.0062 5 6 4.2816 0.0019 -0.0062 6 6 3.6028 -1.1989 -0.0005 7 6 2.2066 -1.2079 0.0054 8 6 1.4734 -2.4895 0.0106 9 7 0.1898 -2.6264 0.0159 10 8 -0.2186 -3.9800 0.0127 11 6 0.9159 -4.7810 0.4202 12 1 0.9086 -4.9506 1.4969 13 6 0.9558 -6.0877 -0.3294 14 8 0.1134 -6.3323 -1.1671 15 7 1.9275 -6.9847 -0.0690 16 6 2.0212 -8.1302 -0.8164 17 1 1.5863 -8.1676 -1.8042 18 6 2.6758 -9.2430 -0.3029 19 7 2.9031 -9.3342 0.9883 20 14 3.2330 -10.6098 -1.4479 21 1 4.6115 -10.3269 -1.9225 22 1 3.2160 -11.9036 -0.7194 23 1 2.3144 -10.6852 -2.6123 24 6 2.8836 -6.7355 1.0128 25 6 2.3020 -7.1733 2.2922 26 7 1.8541 -7.5106 3.2807 27 6 2.0990 -3.8714 0.0108 28 1 -0.3634 0.0046 1.0276 29 1 -0.3633 0.8877 -0.5179 30 1 -0.3634 -0.8923 -0.5099 31 1 1.6585 2.1293 0.0004 32 1 4.1182 2.1331 -0.0107 33 1 5.3615 0.0103 -0.0106 34 1 4.1501 -2.1301 0.0000 35 1 3.3603 -10.1109 1.3466 36 1 3.8014 -7.2914 0.8217 37 1 3.1077 -5.6698 1.0613 38 1 2.4615 -4.1321 -0.9835 39 1 2.9044 -3.9313 0.7428 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906479545.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:25 Heat of formation + Delta-G solvation = 43.096733 kcal Electronic energy + Delta-G solvation = -25350.661540 eV Core-core repulsion = 21646.693248 eV Total energy + Delta-G solvation = -3703.968292 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.81429 -40.44536 -39.54251 -37.67271 -36.24909 -34.84131 -34.07226 -33.49984 -31.81673 -31.17462 -29.23820 -28.00774 -27.18742 -25.01552 -24.30868 -22.37446 -21.48877 -20.59986 -19.83502 -18.82329 -18.13280 -17.72232 -17.20564 -16.86577 -16.67090 -16.12104 -15.90102 -15.60961 -15.26200 -15.09727 -14.81506 -14.69458 -14.23857 -14.13856 -13.95896 -13.82582 -13.78259 -13.51324 -13.27002 -13.17453 -12.97323 -12.87810 -12.77143 -12.41269 -12.32642 -12.21242 -12.11522 -11.95807 -11.29622 -11.18445 -11.15577 -10.47227 -10.00973 -9.67098 -9.46693 -8.45541 -6.08823 -0.26034 0.49817 1.24412 1.32052 1.45758 1.54453 1.62905 1.81412 1.98112 2.19069 2.33935 2.77534 2.89183 2.95657 3.01683 3.34051 3.40731 3.46402 3.71662 3.93495 3.96857 4.04140 4.17882 4.27663 4.47977 4.49054 4.53894 4.63403 4.69297 4.79854 4.80912 4.88330 4.93100 5.13689 5.42649 5.42869 5.50821 5.61543 5.67385 5.91545 6.06386 6.21647 6.33940 6.94444 7.00574 7.19590 7.74232 8.57813 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019691 B = 0.003496 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.624530 B = 8006.939096 C = 8256.840822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.060 4.060 3 C -0.134 4.134 4 C -0.090 4.090 5 C -0.130 4.130 6 C -0.079 4.079 7 C -0.073 4.073 8 C 0.144 3.856 9 N -0.309 5.309 10 O -0.220 6.220 11 C 0.036 3.964 12 H 0.105 0.895 13 C 0.451 3.549 14 O -0.604 6.604 15 N -0.438 5.438 16 C -0.341 4.341 17 H 0.083 0.917 18 C 0.011 3.989 19 N -0.891 5.891 20 Si 0.992 3.008 21 H -0.252 1.252 22 H -0.287 1.287 23 H -0.280 1.280 24 C 0.218 3.782 25 C 0.252 3.748 26 N -0.503 5.503 27 C -0.134 4.134 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.145 0.855 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.278 0.722 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.484 21.057 -0.830 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.062 4.062 3 C -0.151 4.151 4 C -0.109 4.109 5 C -0.147 4.147 6 C -0.099 4.099 7 C -0.075 4.075 8 C -0.044 4.044 9 N -0.054 5.054 10 O -0.234 6.234 11 C -0.026 4.026 12 H 0.122 0.878 13 C 0.239 3.761 14 O -0.488 6.488 15 N -0.159 5.159 16 C -0.468 4.468 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.529 5.529 20 Si 0.816 3.184 21 H -0.176 1.176 22 H -0.213 1.213 23 H -0.205 1.205 24 C 0.092 3.908 25 C -0.065 4.065 26 N -0.184 5.184 27 C -0.172 4.172 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.163 0.837 32 H 0.173 0.827 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.088 0.912 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.137 0.863 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.269 20.607 0.286 22.598 hybrid contribution 0.274 -1.833 -0.615 1.953 sum 9.543 18.774 -0.329 21.063 Atomic orbital electron populations 1.21194 0.91094 1.03895 1.02853 1.20297 0.96559 0.92757 0.96565 1.21265 0.95162 0.97174 1.01532 1.21757 0.93784 0.99799 0.95521 1.21476 1.01771 0.91345 1.00141 1.21593 0.91163 1.00862 0.96281 1.17910 0.93658 0.87327 1.08568 1.24726 0.91647 0.95744 0.92276 1.78541 1.14970 0.95482 1.16429 1.91415 1.31936 1.11810 1.88274 1.23508 0.88098 0.91537 0.99438 0.87797 1.20341 0.82035 0.87111 0.86576 1.90561 1.39947 1.79898 1.38401 1.43652 1.24970 1.18191 1.29074 1.19668 1.37678 0.90683 0.98773 0.89941 1.25979 0.96688 0.99469 0.97090 1.69844 1.40027 1.31440 1.11551 0.84935 0.79419 0.76472 0.77552 1.17623 1.21253 1.20496 1.19252 0.93152 1.02101 0.76318 1.29760 0.92540 0.90263 0.93981 1.80935 1.09741 1.12136 1.15602 1.23137 0.99323 0.87370 1.07412 0.91131 0.89956 0.90718 0.83730 0.82696 0.82321 0.82793 0.91219 0.84685 0.84611 0.86323 0.82527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.18 71.23 0.65 -2.31 16 2 C -0.06 -1.22 5.91 -19.60 -0.12 -1.33 16 3 C -0.13 -1.91 9.69 22.23 0.22 -1.70 16 4 C -0.09 -0.95 10.04 22.33 0.22 -0.73 16 5 C -0.13 -1.38 10.03 22.23 0.22 -1.15 16 6 C -0.08 -1.15 9.61 22.53 0.22 -0.93 16 7 C -0.07 -1.56 5.87 -20.13 -0.12 -1.68 16 8 C 0.14 3.94 7.05 45.77 0.32 4.27 16 9 N -0.31 -10.85 8.97 -42.23 -0.38 -11.23 16 10 O -0.22 -9.58 11.86 -20.45 -0.24 -9.82 16 11 C 0.04 1.37 3.29 30.44 0.10 1.47 16 12 H 0.10 3.70 7.41 -2.39 -0.02 3.69 16 13 C 0.45 21.38 6.89 87.66 0.60 21.98 16 14 O -0.60 -35.06 16.32 14.78 0.24 -34.82 16 15 N -0.44 -19.80 2.59 -645.41 -1.67 -21.47 16 16 C -0.34 -17.28 9.24 84.04 0.78 -16.50 16 17 H 0.08 4.55 7.48 -2.91 -0.02 4.52 16 18 C 0.01 0.51 4.93 84.93 0.42 0.93 16 19 N -0.89 -42.88 9.41 21.66 0.20 -42.68 16 20 Si 0.99 38.71 29.59 68.60 2.03 40.74 16 21 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 22 H -0.29 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 24 C 0.22 7.70 4.84 84.57 0.41 8.11 16 25 C 0.25 10.58 12.85 89.44 1.15 11.73 16 26 N -0.50 -23.41 18.54 20.01 0.37 -23.04 16 27 C -0.13 -3.43 4.80 30.76 0.15 -3.29 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.43 8.09 -2.38 -0.02 1.41 16 30 H 0.07 2.12 5.19 -2.38 -0.01 2.11 16 31 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 33 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 34 H 0.15 1.48 7.37 -2.91 -0.02 1.45 16 35 H 0.28 12.90 8.31 -92.71 -0.77 12.13 16 36 H 0.14 4.71 6.66 -2.39 -0.02 4.69 16 37 H 0.14 3.21 4.71 -2.39 -0.01 3.20 16 38 H 0.12 3.01 7.90 -2.39 -0.02 2.99 16 39 H 0.16 2.45 6.49 -2.39 -0.02 2.43 16 Total: -1.00 -76.82 334.74 6.88 -69.94 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 1.11 Total: 13.52 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 5.23 Total: 18.87 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -1.48 Total: -98.42 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: 0.00 Total: -44.64 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -76.82 6.88 -69.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906479545.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.037 kcal (2) G-P(sol) polarization free energy of solvation -76.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds