Wall clock time and date at job start Tue Mar 31 2020 10:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00112 * 2 1 4 4 H 1.48503 * 109.47088 * 274.98387 * 3 2 1 5 5 H 1.48505 * 109.47133 * 34.98297 * 3 2 1 6 6 H 1.48502 * 109.47239 * 154.98093 * 3 2 1 7 7 C 1.38814 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99908 * 185.06804 * 7 2 1 9 9 N 1.36929 * 119.99965 * 5.07522 * 7 2 1 10 10 C 1.47581 * 134.49610 * 173.47986 * 9 7 2 11 11 C 1.53940 * 86.12130 * 155.35299 * 10 9 7 12 12 N 1.46496 * 113.74113 * 137.95338 * 11 10 9 13 13 C 1.34779 * 120.00075 * 156.92767 * 12 11 10 14 14 O 1.21520 * 120.00164 * 359.97438 * 13 12 11 15 15 C 1.48147 * 120.00217 * 180.02562 * 13 12 11 16 16 C 1.40031 * 120.86553 * 359.97438 * 15 13 12 17 17 C 1.38146 * 119.26880 * 179.97438 * 16 15 13 18 18 N 1.31712 * 121.06515 * 359.97438 * 17 16 15 19 19 C 1.32826 * 121.90018 * 0.02562 * 18 17 16 20 20 C 1.47657 * 119.69467 * 179.97438 * 19 18 17 21 21 C 1.36034 * 125.93995 * 0.02562 * 20 19 18 22 22 C 1.40828 * 106.73941 * 179.97438 * 21 20 19 23 23 C 1.34812 * 107.04151 * 0.02562 * 22 21 20 24 24 O 1.34234 * 108.68514 * 0.23899 * 23 22 21 25 25 C 1.39476 * 120.86767 * 180.25176 * 15 13 12 26 26 C 1.47821 * 134.45775 * 353.33789 * 9 7 2 27 27 H 0.96999 * 120.00229 * 0.02562 * 1 2 3 28 28 H 1.09002 * 113.77031 * 41.04750 * 10 9 7 29 29 H 1.09003 * 113.76901 * 269.65472 * 10 9 7 30 30 H 1.09004 * 113.74391 * 269.15717 * 11 10 9 31 31 H 0.96995 * 120.00225 * 336.91869 * 12 11 10 32 32 H 1.07996 * 120.36474 * 0.02562 * 16 15 13 33 33 H 1.07997 * 119.46384 * 180.02562 * 17 16 15 34 34 H 1.08002 * 126.63018 * 359.97438 * 21 20 19 35 35 H 1.07993 * 126.48296 * 180.02562 * 22 21 20 36 36 H 1.07997 * 125.65776 * 179.97438 * 23 22 21 37 37 H 1.08007 * 120.55241 * 0.02562 * 25 15 13 38 38 H 1.08999 * 113.76797 * 90.38461 * 26 9 7 39 39 H 1.09002 * 113.83579 * 318.92096 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0870 -1.2039 0.0832 9 7 1.3296 -2.3857 -0.1038 10 6 1.7286 -3.7985 -0.2553 11 6 0.3710 -4.1417 0.3841 12 7 -0.3173 -5.2633 -0.2595 13 6 -1.2388 -5.9704 0.4242 14 8 -1.4984 -5.6778 1.5747 15 6 -1.9345 -7.1050 -0.2265 16 6 -1.6492 -7.4583 -1.5511 17 6 -2.3172 -8.5226 -2.1252 18 7 -3.2148 -9.2073 -1.4467 19 6 -3.5198 -8.9108 -0.1884 20 6 -4.5345 -9.7109 0.5262 21 6 -5.2232 -10.7671 0.0157 22 6 -6.0778 -11.2258 1.0368 23 6 -5.8717 -10.4354 2.1092 24 8 -4.9432 -9.5182 1.7955 25 6 -2.8949 -7.8456 0.4624 26 6 -0.1002 -2.7610 -0.1074 27 1 -0.4850 0.8400 -0.0004 28 1 2.5860 -4.0808 0.3558 29 1 1.8196 -4.1205 -1.2926 30 1 0.4074 -4.2320 1.4698 31 1 -0.1100 -5.4971 -1.1778 32 1 -0.9144 -6.9054 -2.1174 33 1 -2.0993 -8.7980 -3.1464 34 1 -5.1322 -11.1750 -0.9802 35 1 -6.7677 -12.0541 0.9728 36 1 -6.3738 -10.5227 3.0614 37 1 -3.1472 -7.6021 1.4840 38 1 -0.5475 -2.7776 -1.1012 39 1 -0.7003 -2.2164 0.6216 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030495973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:45 Heat of formation + Delta-G solvation = 82.061934 kcal Electronic energy + Delta-G solvation = -24071.621527 eV Core-core repulsion = 20369.342893 eV Total energy + Delta-G solvation = -3702.278634 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.82650 -40.67003 -39.23106 -37.55739 -34.01701 -33.44395 -32.74436 -32.43675 -31.73378 -28.90913 -27.61291 -25.22168 -24.91020 -24.07864 -23.01928 -21.80426 -21.50620 -20.26371 -19.78330 -18.48533 -17.30786 -16.89068 -16.58349 -16.37817 -15.97923 -15.63418 -15.37687 -15.11662 -14.72866 -14.39205 -13.97929 -13.89033 -13.82052 -13.20954 -13.10448 -12.78464 -12.75322 -12.12969 -11.97671 -11.54599 -11.54076 -10.92770 -10.86435 -10.56084 -10.41388 -10.28367 -10.15095 -10.06820 -9.93239 -9.68248 -9.58958 -8.85979 -8.59691 -8.37328 -6.97765 -5.84278 -3.17823 0.20477 0.62814 1.62828 2.33384 2.40448 2.96275 3.15790 3.36517 3.41553 3.43899 3.68082 4.00898 4.30598 4.36486 4.50135 4.62666 4.68084 4.73361 4.78803 4.95981 5.07542 5.38101 5.39750 5.41806 5.49454 5.52929 5.63023 5.70247 5.82104 5.92980 6.10772 6.16433 6.23863 6.31522 6.46298 6.61060 6.75872 7.16575 7.24707 7.47834 7.50069 7.67818 7.89791 8.29403 8.96695 9.63121 10.49180 11.33035 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.031823 B = 0.002305 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.662820 B =12146.478074 C =12593.374212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.228 4.228 8 H 0.083 0.917 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.089 3.911 12 N -0.704 5.704 13 C 0.553 3.447 14 O -0.528 6.528 15 C -0.074 4.074 16 C -0.140 4.140 17 C 0.108 3.892 18 N -0.458 5.458 19 C 0.195 3.805 20 C 0.017 3.983 21 C -0.152 4.152 22 C -0.221 4.221 23 C -0.021 4.021 24 O -0.166 6.166 25 C -0.098 4.098 26 C 0.157 3.843 27 H 0.256 0.744 28 H 0.051 0.949 29 H 0.036 0.964 30 H 0.113 0.887 31 H 0.397 0.603 32 H 0.146 0.854 33 H 0.170 0.830 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.208 0.792 37 H 0.153 0.847 38 H 0.032 0.968 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.070 -23.074 -2.546 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.355 4.355 8 H 0.101 0.899 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.015 4.015 12 N -0.354 5.354 13 C 0.337 3.663 14 O -0.404 6.404 15 C -0.085 4.085 16 C -0.160 4.160 17 C -0.050 4.050 18 N -0.169 5.169 19 C 0.059 3.941 20 C -0.033 4.033 21 C -0.172 4.172 22 C -0.240 4.240 23 C -0.090 4.090 24 O -0.061 6.061 25 C -0.118 4.118 26 C 0.031 3.969 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.131 0.869 31 H 0.232 0.768 32 H 0.163 0.837 33 H 0.187 0.813 34 H 0.175 0.825 35 H 0.171 0.829 36 H 0.225 0.775 37 H 0.171 0.829 38 H 0.049 0.951 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.491 -22.905 -1.877 24.864 hybrid contribution 0.804 1.374 -0.351 1.630 sum -8.687 -21.531 -2.227 23.324 Atomic orbital electron populations 1.69839 1.05125 1.25645 1.55628 1.24868 0.95709 0.97736 1.01902 0.86085 0.78749 0.83310 0.77531 1.21532 1.21595 1.20431 1.18982 0.90754 0.81599 1.44199 0.89928 1.45699 1.02351 1.00550 1.84713 1.22870 0.94532 0.86812 0.97162 1.24063 0.93482 0.85058 0.98923 1.46072 1.40085 1.32852 1.16427 1.18103 0.80117 0.81874 0.86158 1.90799 1.63954 1.68653 1.17013 1.20490 0.97040 0.96518 0.94472 1.22495 1.00625 0.98314 0.94590 1.22652 0.91186 0.91329 0.99828 1.67299 1.14538 1.28816 1.06270 1.18146 0.93671 0.92407 0.89866 1.19660 1.00730 0.99454 0.83463 1.21894 0.97381 0.96771 1.01175 1.21858 1.04473 1.03951 0.93740 1.24265 0.93308 0.90416 1.01051 1.84065 1.46456 1.47842 1.27747 1.22279 0.94159 0.93451 1.01943 1.22665 0.88162 0.87773 0.98323 0.93440 0.93084 0.94643 0.86895 0.76814 0.83673 0.81283 0.82482 0.82940 0.77515 0.82929 0.95058 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.24 11.51 55.49 0.64 -26.60 16 2 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 21.96 29.56 -169.99 -5.02 16.93 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.23 -6.33 10.70 -15.06 -0.16 -6.49 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.61 -15.30 3.70 -177.86 -0.66 -15.96 16 10 C 0.11 2.18 8.69 -2.97 -0.03 2.15 16 11 C 0.09 1.68 4.40 -70.14 -0.31 1.37 16 12 N -0.70 -10.41 5.33 -56.19 -0.30 -10.71 16 13 C 0.55 8.71 7.80 -12.19 -0.10 8.61 16 14 O -0.53 -10.39 16.06 5.35 0.09 -10.30 16 15 C -0.07 -0.94 5.90 -104.70 -0.62 -1.56 16 16 C -0.14 -1.31 9.61 -38.94 -0.37 -1.69 16 17 C 0.11 0.96 11.16 -17.64 -0.20 0.76 16 18 N -0.46 -5.15 10.02 -9.92 -0.10 -5.25 16 19 C 0.19 2.39 6.74 -83.08 -0.56 1.83 16 20 C 0.02 0.20 7.03 -36.53 -0.26 -0.05 16 21 C -0.15 -1.53 10.58 -39.39 -0.42 -1.94 16 22 C -0.22 -1.78 10.89 -39.82 -0.43 -2.21 16 23 C -0.02 -0.17 12.08 29.52 0.36 0.19 16 24 O -0.17 -1.87 10.39 4.74 0.05 -1.82 16 25 C -0.10 -1.27 9.32 -38.61 -0.36 -1.63 16 26 C 0.16 3.69 7.24 -2.83 -0.02 3.67 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 30 H 0.11 2.31 7.51 -51.93 -0.39 1.92 16 31 H 0.40 4.53 6.85 -40.82 -0.28 4.26 16 32 H 0.15 0.95 6.52 -52.49 -0.34 0.61 16 33 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.21 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.15 2.07 7.58 -52.48 -0.40 1.68 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.99 7.37 -51.93 -0.38 1.61 16 LS Contribution 344.12 15.07 5.19 5.19 Total: -1.00 -34.86 344.12 -7.98 -42.84 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.30 Total: 2.91 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -3.57 Total: 2.78 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.42 Total: -58.52 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.14 Total: -12.12 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.86 -7.98 -42.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030495973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.902 kcal (2) G-P(sol) polarization free energy of solvation -34.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds