Wall clock time and date at job start Tue Mar 31 2020 10:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00112 * 2 1 4 4 H 1.48503 * 109.47088 * 274.98387 * 3 2 1 5 5 H 1.48505 * 109.47133 * 34.98297 * 3 2 1 6 6 H 1.48502 * 109.47239 * 154.98093 * 3 2 1 7 7 C 1.38814 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99908 * 185.06804 * 7 2 1 9 9 N 1.36929 * 119.99965 * 5.07522 * 7 2 1 10 10 C 1.47581 * 134.49610 * 173.47986 * 9 7 2 11 11 C 1.53940 * 86.12130 * 155.35299 * 10 9 7 12 12 N 1.46496 * 113.74113 * 137.95338 * 11 10 9 13 13 C 1.34779 * 120.00075 * 156.92767 * 12 11 10 14 14 O 1.21520 * 120.00164 * 359.97438 * 13 12 11 15 15 C 1.48147 * 120.00217 * 180.02562 * 13 12 11 16 16 C 1.40031 * 120.86553 * 359.97438 * 15 13 12 17 17 C 1.38146 * 119.26880 * 179.97438 * 16 15 13 18 18 N 1.31712 * 121.06515 * 359.97438 * 17 16 15 19 19 C 1.32826 * 121.90018 * 0.02562 * 18 17 16 20 20 C 1.47657 * 119.69467 * 179.97438 * 19 18 17 21 21 C 1.36034 * 125.93995 * 0.02562 * 20 19 18 22 22 C 1.40828 * 106.73941 * 179.97438 * 21 20 19 23 23 C 1.34812 * 107.04151 * 0.02562 * 22 21 20 24 24 O 1.34234 * 108.68514 * 0.23899 * 23 22 21 25 25 C 1.39476 * 120.86767 * 180.25176 * 15 13 12 26 26 C 1.47821 * 134.45775 * 353.33789 * 9 7 2 27 27 H 0.96999 * 120.00229 * 0.02562 * 1 2 3 28 28 H 1.09002 * 113.77031 * 41.04750 * 10 9 7 29 29 H 1.09003 * 113.76901 * 269.65472 * 10 9 7 30 30 H 1.09004 * 113.74391 * 269.15717 * 11 10 9 31 31 H 0.96995 * 120.00225 * 336.91869 * 12 11 10 32 32 H 1.07996 * 120.36474 * 0.02562 * 16 15 13 33 33 H 1.07997 * 119.46384 * 180.02562 * 17 16 15 34 34 H 1.08002 * 126.63018 * 359.97438 * 21 20 19 35 35 H 1.07993 * 126.48296 * 180.02562 * 22 21 20 36 36 H 1.07997 * 125.65776 * 179.97438 * 23 22 21 37 37 H 1.08007 * 120.55241 * 0.02562 * 25 15 13 38 38 H 1.08999 * 113.76797 * 90.38461 * 26 9 7 39 39 H 1.09002 * 113.83579 * 318.92096 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0870 -1.2039 0.0832 9 7 1.3296 -2.3857 -0.1038 10 6 1.7286 -3.7985 -0.2553 11 6 0.3710 -4.1417 0.3841 12 7 -0.3173 -5.2633 -0.2595 13 6 -1.2388 -5.9704 0.4242 14 8 -1.4984 -5.6778 1.5747 15 6 -1.9345 -7.1050 -0.2265 16 6 -1.6492 -7.4583 -1.5511 17 6 -2.3172 -8.5226 -2.1252 18 7 -3.2148 -9.2073 -1.4467 19 6 -3.5198 -8.9108 -0.1884 20 6 -4.5345 -9.7109 0.5262 21 6 -5.2232 -10.7671 0.0157 22 6 -6.0778 -11.2258 1.0368 23 6 -5.8717 -10.4354 2.1092 24 8 -4.9432 -9.5182 1.7955 25 6 -2.8949 -7.8456 0.4624 26 6 -0.1002 -2.7610 -0.1074 27 1 -0.4850 0.8400 -0.0004 28 1 2.5860 -4.0808 0.3558 29 1 1.8196 -4.1205 -1.2926 30 1 0.4074 -4.2320 1.4698 31 1 -0.1100 -5.4971 -1.1778 32 1 -0.9144 -6.9054 -2.1174 33 1 -2.0993 -8.7980 -3.1464 34 1 -5.1322 -11.1750 -0.9802 35 1 -6.7677 -12.0541 0.9728 36 1 -6.3738 -10.5227 3.0614 37 1 -3.1472 -7.6021 1.4840 38 1 -0.5475 -2.7776 -1.1012 39 1 -0.7003 -2.2164 0.6216 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030495973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:44 Heat of formation + Delta-G solvation = 57.530051 kcal Electronic energy + Delta-G solvation = -24072.685309 eV Core-core repulsion = 20369.342893 eV Total energy + Delta-G solvation = -3703.342416 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.54806 -41.70838 -40.49869 -39.15354 -35.41851 -34.45545 -33.93859 -33.30821 -33.21645 -29.71148 -29.43426 -26.66325 -26.42546 -25.01875 -24.45926 -22.80747 -22.25144 -21.48644 -21.23296 -19.49411 -18.79163 -18.20548 -17.76137 -17.14928 -16.99374 -16.83377 -16.75232 -16.37719 -16.12984 -15.72181 -15.30330 -14.99696 -14.89996 -14.57230 -13.91655 -13.82995 -13.67989 -13.42802 -13.35931 -13.25054 -12.94122 -12.83513 -12.67039 -12.34671 -11.97450 -11.56255 -11.43839 -11.25296 -11.01397 -10.90631 -10.69642 -10.67960 -10.08225 -9.10996 -8.98757 -7.95330 -5.29821 -0.63528 -0.28956 0.90361 1.45401 1.47371 1.56689 1.60816 1.72703 1.84504 1.90383 2.47187 2.77622 3.20100 3.28105 3.33539 3.48565 3.56214 3.78571 3.82775 3.85813 4.08545 4.11424 4.22157 4.30613 4.48305 4.57044 4.64547 4.74222 4.81783 4.88923 4.92659 4.99472 5.05412 5.09522 5.19936 5.43254 5.46392 5.55071 5.62041 5.86455 6.06269 6.42588 6.69875 6.85866 7.06836 7.56069 8.48729 9.22300 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.031823 B = 0.002305 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.662820 B =12146.478074 C =12593.374212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.982 3.018 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.234 4.234 8 H 0.092 0.908 9 N -0.640 5.640 10 C 0.125 3.875 11 C 0.117 3.883 12 N -0.687 5.687 13 C 0.554 3.446 14 O -0.575 6.575 15 C -0.088 4.088 16 C -0.124 4.124 17 C 0.117 3.883 18 N -0.467 5.467 19 C 0.187 3.813 20 C -0.021 4.021 21 C -0.150 4.150 22 C -0.226 4.226 23 C -0.018 4.018 24 O -0.190 6.190 25 C -0.117 4.117 26 C 0.155 3.845 27 H 0.249 0.751 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.418 0.582 32 H 0.181 0.819 33 H 0.215 0.785 34 H 0.165 0.835 35 H 0.182 0.818 36 H 0.245 0.755 37 H 0.133 0.867 38 H 0.031 0.969 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 -25.177 -4.461 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.810 3.190 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.362 4.362 8 H 0.110 0.890 9 N -0.367 5.367 10 C -0.001 4.001 11 C 0.011 3.989 12 N -0.339 5.339 13 C 0.342 3.658 14 O -0.455 6.455 15 C -0.099 4.099 16 C -0.144 4.144 17 C -0.041 4.041 18 N -0.178 5.178 19 C 0.053 3.947 20 C -0.070 4.070 21 C -0.170 4.170 22 C -0.245 4.245 23 C -0.086 4.086 24 O -0.086 6.086 25 C -0.138 4.138 26 C 0.028 3.972 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.257 0.743 32 H 0.198 0.802 33 H 0.231 0.769 34 H 0.183 0.817 35 H 0.199 0.801 36 H 0.261 0.739 37 H 0.150 0.850 38 H 0.049 0.951 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.645 -25.073 -3.829 26.796 hybrid contribution 0.487 1.873 0.237 1.950 sum -8.158 -23.199 -3.591 24.853 Atomic orbital electron populations 1.70042 1.06732 1.25802 1.57750 1.25751 0.96549 1.01296 1.02666 0.85011 0.77905 0.78780 0.77349 1.21161 1.22471 1.18769 1.19427 0.91428 0.82855 1.42519 0.89024 1.46023 1.03272 1.02209 1.85176 1.23026 0.94719 0.83130 0.99187 1.23319 0.93364 0.84172 0.98019 1.45718 1.39534 1.31420 1.17261 1.18558 0.79520 0.82188 0.85574 1.90778 1.65319 1.70094 1.19315 1.20222 0.97651 0.95919 0.96062 1.22845 1.00550 0.98182 0.92858 1.23437 0.89415 0.90069 1.01160 1.67402 1.15295 1.29348 1.05729 1.18259 0.93864 0.92203 0.90380 1.19858 1.02196 1.00868 0.84111 1.22162 0.97003 0.96004 1.01876 1.22225 1.04571 1.04708 0.92986 1.25149 0.91910 0.89068 1.02505 1.84060 1.47502 1.49113 1.27897 1.22167 0.95443 0.94705 1.01522 1.22552 0.87396 0.90138 0.97137 0.94235 0.91470 0.91018 0.88796 0.74314 0.80219 0.76879 0.81726 0.80113 0.73872 0.84951 0.95148 0.95389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.69 11.51 21.65 0.25 -58.44 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.98 45.63 29.56 68.60 2.03 47.66 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.23 -12.97 10.70 84.04 0.90 -12.07 16 8 H 0.09 4.77 7.83 -2.91 -0.02 4.74 16 9 N -0.64 -32.19 3.70 -716.62 -2.65 -34.84 16 10 C 0.12 4.52 8.69 86.48 0.75 5.27 16 11 C 0.12 4.39 4.40 46.74 0.21 4.60 16 12 N -0.69 -19.44 5.33 -449.97 -2.40 -21.83 16 13 C 0.55 17.57 7.80 86.88 0.68 18.25 16 14 O -0.58 -23.79 16.06 -3.78 -0.06 -23.85 16 15 C -0.09 -2.18 5.90 -19.91 -0.12 -2.30 16 16 C -0.12 -1.96 9.61 22.68 0.22 -1.74 16 17 C 0.12 1.68 11.16 84.69 0.95 2.63 16 18 N -0.47 -9.71 10.02 -185.29 -1.86 -11.56 16 19 C 0.19 4.64 6.74 41.81 0.28 4.92 16 20 C -0.02 -0.49 7.03 24.25 0.17 -0.32 16 21 C -0.15 -2.90 10.58 22.39 0.24 -2.66 16 22 C -0.23 -3.26 10.89 22.12 0.24 -3.02 16 23 C -0.02 -0.27 12.08 67.03 0.81 0.54 16 24 O -0.19 -4.39 10.39 -5.97 -0.06 -4.45 16 25 C -0.12 -3.19 9.32 22.90 0.21 -2.98 16 26 C 0.15 7.43 7.24 86.44 0.63 8.06 16 27 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 28 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.07 2.17 8.11 -2.39 -0.02 2.15 16 30 H 0.09 3.94 7.51 -2.38 -0.02 3.92 16 31 H 0.42 8.20 6.85 -92.71 -0.63 7.56 16 32 H 0.18 1.49 6.52 -2.91 -0.02 1.47 16 33 H 0.21 1.11 8.06 -2.91 -0.02 1.08 16 34 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 36 H 0.25 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.13 4.01 7.58 -2.91 -0.02 3.99 16 38 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.03 1.58 7.37 -2.39 -0.02 1.56 16 Total: -1.00 -80.58 344.12 2.34 -78.24 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.46 Total: 13.42 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 6.62 Total: 15.66 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -6.66 Total: -126.68 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.12 Total: -28.30 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -80.58 2.34 -78.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030495973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.774 kcal (2) G-P(sol) polarization free energy of solvation -80.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds