Wall clock time and date at job start Tue Mar 31 2020 10:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86792 * 120.00316 * 2 1 4 4 H 1.48495 * 109.47709 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46928 * 299.99886 * 3 2 1 6 6 H 1.48500 * 109.47111 * 59.99431 * 3 2 1 7 7 C 1.40029 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99611 * 179.97438 * 7 2 1 9 9 C 1.41317 * 120.00258 * 0.02562 * 7 2 1 10 10 C 1.40592 * 119.78495 * 179.97438 * 9 7 2 11 11 C 1.38348 * 119.14694 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.67964 * 359.76050 * 11 10 9 13 13 C 1.39758 * 119.49358 * 0.48632 * 12 11 10 14 14 N 1.38823 * 119.58395 * 179.77268 * 13 12 11 15 15 C 1.46496 * 120.00383 * 359.72804 * 14 13 12 16 16 C 1.52997 * 109.47294 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47238 * 179.97438 * 16 15 14 18 18 C 1.38252 * 120.00076 * 269.73412 * 17 16 15 19 19 C 1.38210 * 119.99801 * 179.78933 * 18 17 16 20 20 C 1.38257 * 120.00384 * 0.45627 * 19 18 17 21 21 C 1.38218 * 119.99628 * 359.77151 * 20 19 18 22 22 N 1.48017 * 119.99955 * 180.02562 * 21 20 19 23 23 O 1.21809 * 119.99780 * 180.02562 * 22 21 20 24 24 O 1.21793 * 120.00151 * 0.02562 * 22 21 20 25 25 C 1.38213 * 119.99877 * 89.99996 * 17 16 15 26 26 N 1.31987 * 120.83003 * 359.49667 * 13 12 11 27 27 H 0.96996 * 120.00055 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.42437 * 0.02562 * 10 9 7 29 29 H 1.08001 * 120.65730 * 180.02562 * 11 10 9 30 30 H 1.08002 * 120.25212 * 180.26474 * 12 11 10 31 31 H 0.97006 * 119.99861 * 179.73076 * 14 13 12 32 32 H 1.09001 * 109.47059 * 60.00162 * 15 14 13 33 33 H 1.09004 * 109.47074 * 300.00119 * 15 14 13 34 34 H 1.09001 * 109.46832 * 60.00150 * 16 15 14 35 35 H 1.09000 * 109.47611 * 300.00447 * 16 15 14 36 36 H 1.07997 * 120.00071 * 359.97438 * 18 17 16 37 37 H 1.08009 * 120.00198 * 180.24697 * 19 18 17 38 38 H 1.07991 * 120.00512 * 179.79455 * 20 19 18 39 39 H 1.08009 * 119.99729 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8827 2.3963 -1.2126 6 1 1.8827 2.3964 1.2124 7 6 2.0075 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0001 9 6 1.3009 -2.4366 0.0005 10 6 2.0084 -3.6515 0.0005 11 6 1.3034 -4.8418 0.0000 12 6 -0.0821 -4.7945 0.0046 13 6 -0.7282 -3.5552 -0.0008 14 7 -2.1156 -3.5056 -0.0010 15 6 -2.8930 -4.7473 -0.0017 16 6 -4.3863 -4.4141 -0.0012 17 6 -5.1860 -5.6914 -0.0026 18 6 -5.5577 -6.2731 -1.2005 19 6 -6.2874 -7.4468 -1.2017 20 6 -6.6538 -8.0344 -0.0050 21 6 -6.2862 -7.4503 1.1926 22 7 -6.6780 -8.0796 2.4738 23 8 -6.3544 -7.5646 3.5293 24 8 -7.3238 -9.1122 2.4728 25 6 -5.5526 -6.2785 1.1938 26 7 -0.0360 -2.4314 -0.0001 27 1 -0.4850 0.8400 -0.0004 28 1 3.0885 -3.6554 0.0010 29 1 1.8221 -5.7891 0.0004 30 1 -0.6578 -5.7083 0.0086 31 1 -2.5703 -2.6487 -0.0007 32 1 -2.6505 -5.3283 0.8881 33 1 -2.6501 -5.3275 -0.8919 34 1 -4.6291 -3.8329 -0.8908 35 1 -4.6289 -3.8340 0.8892 36 1 -5.2752 -5.8118 -2.1352 37 1 -6.5743 -7.9034 -2.1375 38 1 -7.2268 -8.9497 -0.0059 39 1 -5.2655 -5.8220 2.1296 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:15 Heat of formation + Delta-G solvation = 55.948615 kcal Electronic energy + Delta-G solvation = -23899.125298 eV Core-core repulsion = 20195.714306 eV Total energy + Delta-G solvation = -3703.410992 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.38045 -39.99580 -38.31848 -36.76675 -35.89685 -33.75274 -32.88840 -32.19530 -30.49020 -29.64275 -27.65919 -26.82484 -25.39417 -23.81858 -22.91780 -21.87532 -21.26007 -20.38900 -19.11764 -18.80167 -17.72356 -17.41500 -16.96417 -16.31993 -16.07170 -15.24745 -14.90707 -14.71126 -14.41969 -14.34900 -13.72753 -13.69548 -13.12674 -12.93324 -12.65479 -12.43551 -12.17289 -11.87525 -11.76265 -11.66591 -11.49929 -11.33365 -11.33269 -11.15366 -11.00490 -10.65908 -10.47139 -9.95506 -9.93980 -9.55084 -9.52096 -8.95310 -7.95935 -7.56400 -6.59617 -6.37325 -4.51330 -0.42670 0.54432 1.08955 1.16799 2.82782 2.89520 3.09170 3.13579 3.18962 3.25721 3.80424 3.95468 4.05640 4.23448 4.42679 4.51095 4.54705 4.78260 4.80768 5.00069 5.05009 5.20054 5.37015 5.48116 5.56039 5.68381 5.87202 5.95739 5.98016 6.10067 6.11121 6.21287 6.51737 6.80255 6.84713 6.88611 7.20643 7.42272 7.54271 7.75692 7.86687 8.12334 8.30216 8.60849 8.75816 9.06699 10.19533 10.35712 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.022224 B = 0.002388 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.613343 B =11720.381876 C =11889.894633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.433 4.433 8 H 0.084 0.916 9 C 0.291 3.709 10 C -0.315 4.315 11 C -0.032 4.032 12 C -0.368 4.368 13 C 0.410 3.590 14 N -0.740 5.740 15 C 0.148 3.852 16 C -0.095 4.095 17 C -0.068 4.068 18 C -0.062 4.062 19 C -0.115 4.115 20 C -0.062 4.062 21 C -0.043 4.043 22 N 0.029 4.971 23 O -0.158 6.158 24 O -0.164 6.164 25 C -0.051 4.051 26 N -0.531 5.531 27 H 0.269 0.731 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.396 0.604 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.975 -9.635 -3.277 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.154 4.154 3 Si 0.730 3.270 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.465 4.465 8 H 0.102 0.898 9 C 0.165 3.835 10 C -0.338 4.338 11 C -0.056 4.056 12 C -0.394 4.394 13 C 0.171 3.829 14 N -0.378 5.378 15 C 0.022 3.978 16 C -0.133 4.133 17 C -0.070 4.070 18 C -0.080 4.080 19 C -0.134 4.134 20 C -0.081 4.081 21 C -0.126 4.126 22 N 0.548 4.452 23 O -0.374 6.374 24 O -0.379 6.379 25 C -0.070 4.070 26 N -0.252 5.252 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.231 0.769 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.404 -8.605 -3.888 17.223 hybrid contribution 0.514 -0.085 0.360 0.634 sum -13.889 -8.690 -3.528 16.759 Atomic orbital electron populations 1.70154 1.07164 1.27242 1.29224 1.26056 0.94878 1.00965 0.93518 0.86314 0.80942 0.81345 0.78446 1.18422 1.19944 1.19920 1.19630 0.94219 0.89356 1.43292 0.89807 1.18212 0.86872 0.91884 0.86580 1.21552 0.98477 0.93456 1.20277 1.20599 0.93439 0.96407 0.95196 1.20587 0.94646 0.95388 1.28748 1.18476 0.84113 0.90305 0.90030 1.44054 1.02878 1.06479 1.84373 1.20963 0.87704 0.88112 1.01000 1.20874 0.94266 0.93253 1.04863 1.19824 0.98035 0.97500 0.91620 1.21648 0.93447 0.94130 0.98766 1.21223 0.98631 0.95856 0.97645 1.21067 0.97111 0.99997 0.89975 1.21117 1.08846 0.98900 0.83700 1.43652 0.98469 1.00154 1.02942 1.94571 1.57871 1.65386 1.19617 1.94523 1.37266 1.11902 1.94248 1.21036 0.93229 0.91977 1.00731 1.68204 1.07717 1.24285 1.25035 0.92002 0.88644 0.88931 0.89357 0.76897 0.92891 0.92850 0.89280 0.89428 0.83684 0.83449 0.83079 0.82752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.66 11.46 55.55 0.64 -18.02 16 2 C 0.07 1.79 5.50 -17.34 -0.10 1.69 16 3 Si 0.91 18.45 29.56 -169.99 -5.02 13.43 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.43 -11.60 9.14 -37.74 -0.34 -11.95 16 8 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 9 C 0.29 8.03 6.55 -85.00 -0.56 7.48 16 10 C -0.31 -7.90 9.83 -38.65 -0.38 -8.28 16 11 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 12 C -0.37 -8.33 9.34 -38.87 -0.36 -8.69 16 13 C 0.41 9.73 7.65 -155.31 -1.19 8.55 16 14 N -0.74 -13.75 5.72 -60.40 -0.35 -14.09 16 15 C 0.15 2.03 4.87 -4.05 -0.02 2.01 16 16 C -0.09 -0.91 5.46 -27.88 -0.15 -1.06 16 17 C -0.07 -0.59 5.13 -104.62 -0.54 -1.13 16 18 C -0.06 -0.43 9.70 -39.59 -0.38 -0.81 16 19 C -0.12 -0.70 10.05 -39.58 -0.40 -1.10 16 20 C -0.06 -0.49 9.56 -39.58 -0.38 -0.87 16 21 C -0.04 -0.44 6.85 -79.95 -0.55 -0.99 16 22 N 0.03 0.36 4.45 33.96 0.15 0.51 16 23 O -0.16 -2.20 18.45 -29.46 -0.54 -2.74 16 24 O -0.16 -2.14 18.45 -29.46 -0.54 -2.69 16 25 C -0.05 -0.49 9.21 -39.58 -0.36 -0.86 16 26 N -0.53 -14.40 7.89 -10.33 -0.08 -14.48 16 27 H 0.27 6.32 8.29 -40.82 -0.34 5.98 16 28 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 29 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 30 H 0.09 1.78 6.68 -52.49 -0.35 1.43 16 31 H 0.40 7.21 8.59 -40.82 -0.35 6.86 16 32 H 0.05 0.76 7.91 -51.93 -0.41 0.35 16 33 H 0.05 0.73 7.93 -51.93 -0.41 0.32 16 34 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 36 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.15 0.48 8.06 -52.48 -0.42 0.06 16 38 H 0.15 0.98 7.61 -52.49 -0.40 0.58 16 39 H 0.15 1.49 7.61 -52.48 -0.40 1.09 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -31.38 347.15 -11.03 -42.41 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.40 Total: 7.60 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -6.11 Total: -17.16 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.36 Total: -46.08 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -1.09 Total: -5.43 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.38 -11.03 -42.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.360 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds