Wall clock time and date at job start Tue Mar 31 2020 10:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86792 * 120.00316 * 2 1 4 4 H 1.48495 * 109.47709 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46928 * 299.99886 * 3 2 1 6 6 H 1.48500 * 109.47111 * 59.99431 * 3 2 1 7 7 C 1.40029 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99611 * 179.97438 * 7 2 1 9 9 C 1.41317 * 120.00258 * 0.02562 * 7 2 1 10 10 C 1.40592 * 119.78495 * 179.97438 * 9 7 2 11 11 C 1.38348 * 119.14694 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.67964 * 359.76050 * 11 10 9 13 13 C 1.39758 * 119.49358 * 0.48632 * 12 11 10 14 14 N 1.38823 * 119.58395 * 179.77268 * 13 12 11 15 15 C 1.46496 * 120.00383 * 359.72804 * 14 13 12 16 16 C 1.52997 * 109.47294 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47238 * 179.97438 * 16 15 14 18 18 C 1.38252 * 120.00076 * 269.73412 * 17 16 15 19 19 C 1.38210 * 119.99801 * 179.78933 * 18 17 16 20 20 C 1.38257 * 120.00384 * 0.45627 * 19 18 17 21 21 C 1.38218 * 119.99628 * 359.77151 * 20 19 18 22 22 N 1.48017 * 119.99955 * 180.02562 * 21 20 19 23 23 O 1.21809 * 119.99780 * 180.02562 * 22 21 20 24 24 O 1.21793 * 120.00151 * 0.02562 * 22 21 20 25 25 C 1.38213 * 119.99877 * 89.99996 * 17 16 15 26 26 N 1.31987 * 120.83003 * 359.49667 * 13 12 11 27 27 H 0.96996 * 120.00055 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.42437 * 0.02562 * 10 9 7 29 29 H 1.08001 * 120.65730 * 180.02562 * 11 10 9 30 30 H 1.08002 * 120.25212 * 180.26474 * 12 11 10 31 31 H 0.97006 * 119.99861 * 179.73076 * 14 13 12 32 32 H 1.09001 * 109.47059 * 60.00162 * 15 14 13 33 33 H 1.09004 * 109.47074 * 300.00119 * 15 14 13 34 34 H 1.09001 * 109.46832 * 60.00150 * 16 15 14 35 35 H 1.09000 * 109.47611 * 300.00447 * 16 15 14 36 36 H 1.07997 * 120.00071 * 359.97438 * 18 17 16 37 37 H 1.08009 * 120.00198 * 180.24697 * 19 18 17 38 38 H 1.07991 * 120.00512 * 179.79455 * 20 19 18 39 39 H 1.08009 * 119.99729 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8827 2.3963 -1.2126 6 1 1.8827 2.3964 1.2124 7 6 2.0075 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0001 9 6 1.3009 -2.4366 0.0005 10 6 2.0084 -3.6515 0.0005 11 6 1.3034 -4.8418 0.0000 12 6 -0.0821 -4.7945 0.0046 13 6 -0.7282 -3.5552 -0.0008 14 7 -2.1156 -3.5056 -0.0010 15 6 -2.8930 -4.7473 -0.0017 16 6 -4.3863 -4.4141 -0.0012 17 6 -5.1860 -5.6914 -0.0026 18 6 -5.5577 -6.2731 -1.2005 19 6 -6.2874 -7.4468 -1.2017 20 6 -6.6538 -8.0344 -0.0050 21 6 -6.2862 -7.4503 1.1926 22 7 -6.6780 -8.0796 2.4738 23 8 -6.3544 -7.5646 3.5293 24 8 -7.3238 -9.1122 2.4728 25 6 -5.5526 -6.2785 1.1938 26 7 -0.0360 -2.4314 -0.0001 27 1 -0.4850 0.8400 -0.0004 28 1 3.0885 -3.6554 0.0010 29 1 1.8221 -5.7891 0.0004 30 1 -0.6578 -5.7083 0.0086 31 1 -2.5703 -2.6487 -0.0007 32 1 -2.6505 -5.3283 0.8881 33 1 -2.6501 -5.3275 -0.8919 34 1 -4.6291 -3.8329 -0.8908 35 1 -4.6289 -3.8340 0.8892 36 1 -5.2752 -5.8118 -2.1352 37 1 -6.5743 -7.9034 -2.1375 38 1 -7.2268 -8.9497 -0.0059 39 1 -5.2655 -5.8220 2.1296 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:15 Heat of formation + Delta-G solvation = 39.678185 kcal Electronic energy + Delta-G solvation = -23899.830837 eV Core-core repulsion = 20195.714306 eV Total energy + Delta-G solvation = -3704.116531 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.28944 -40.71292 -40.07450 -37.73306 -37.22450 -35.37469 -34.15906 -32.86826 -32.28733 -31.13827 -28.95604 -27.65806 -27.25214 -24.87423 -23.65887 -23.38954 -22.45510 -22.05403 -19.96174 -19.72667 -19.27311 -18.64792 -17.99403 -17.52633 -16.80737 -16.71612 -16.47607 -16.10615 -15.57476 -15.40812 -15.10769 -14.77728 -14.29836 -14.20074 -14.11806 -13.73840 -13.23936 -12.94821 -12.91510 -12.79180 -12.71606 -12.61286 -12.54280 -12.37390 -12.35952 -12.18814 -12.17483 -11.71618 -11.29067 -10.67923 -10.56795 -10.19811 -9.84206 -9.46070 -8.31609 -8.23786 -6.48244 -1.26781 -0.07613 0.28524 0.35320 1.04623 1.33240 1.42361 1.56978 1.57244 2.24371 2.25397 2.62010 2.91989 3.35448 3.48165 3.75898 3.88635 3.94712 4.02562 4.04577 4.10181 4.29483 4.36356 4.50123 4.65514 4.70194 4.76758 4.88488 4.94138 4.99585 5.00767 5.02014 5.10424 5.14085 5.27763 5.37294 5.51431 5.70565 5.95463 6.05486 6.23027 6.42068 6.54263 6.83364 6.94625 7.21365 8.33375 8.50574 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.022224 B = 0.002388 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.613343 B =11720.381876 C =11889.894633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.026 3.974 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.470 4.470 8 H 0.085 0.915 9 C 0.258 3.742 10 C -0.344 4.344 11 C -0.031 4.031 12 C -0.368 4.368 13 C 0.395 3.605 14 N -0.733 5.733 15 C 0.146 3.854 16 C -0.082 4.082 17 C -0.074 4.074 18 C -0.050 4.050 19 C -0.102 4.102 20 C -0.059 4.059 21 C -0.064 4.064 22 N 0.030 4.970 23 O -0.204 6.204 24 O -0.164 6.164 25 C -0.061 4.061 26 N -0.564 5.564 27 H 0.277 0.723 28 H 0.101 0.899 29 H 0.127 0.873 30 H 0.116 0.884 31 H 0.396 0.604 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.172 0.828 37 H 0.187 0.813 38 H 0.166 0.834 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.915 -10.193 -5.317 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.502 4.502 8 H 0.103 0.897 9 C 0.131 3.869 10 C -0.367 4.367 11 C -0.055 4.055 12 C -0.394 4.394 13 C 0.154 3.846 14 N -0.369 5.369 15 C 0.022 3.978 16 C -0.119 4.119 17 C -0.076 4.076 18 C -0.068 4.068 19 C -0.120 4.120 20 C -0.078 4.078 21 C -0.147 4.147 22 N 0.544 4.456 23 O -0.411 6.411 24 O -0.383 6.383 25 C -0.081 4.081 26 N -0.287 5.287 27 H 0.087 0.913 28 H 0.119 0.881 29 H 0.145 0.855 30 H 0.134 0.866 31 H 0.231 0.769 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.190 0.810 37 H 0.204 0.796 38 H 0.184 0.816 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.361 -9.165 -5.870 18.826 hybrid contribution 0.689 -0.082 0.883 1.123 sum -14.672 -9.247 -4.986 18.046 Atomic orbital electron populations 1.70233 1.08670 1.28650 1.29613 1.26935 0.95791 1.04270 0.92573 0.85118 0.79380 0.76198 0.78723 1.18039 1.19030 1.19243 1.19960 0.94586 0.90505 1.45133 0.89672 1.18681 0.87745 0.93153 0.87311 1.21699 0.98996 0.93822 1.22197 1.21005 0.93835 0.97129 0.93551 1.20933 0.94934 0.96093 1.27454 1.18944 0.86071 0.90167 0.89434 1.44235 1.01346 1.08326 1.83039 1.21179 0.89674 0.86095 1.00866 1.20718 0.91429 0.94076 1.05707 1.19712 0.98674 0.97241 0.91957 1.22032 0.91964 0.93902 0.98886 1.21661 0.97001 0.95060 0.98243 1.21429 0.96480 1.00322 0.89522 1.21309 1.10658 0.99730 0.83010 1.44031 0.97929 0.99933 1.03686 1.94564 1.59545 1.66054 1.20975 1.94481 1.37062 1.12209 1.94509 1.21045 0.93777 0.92186 1.01048 1.68189 1.07926 1.26094 1.26497 0.91284 0.88055 0.85500 0.86608 0.76909 0.93686 0.92032 0.87581 0.89601 0.81020 0.79598 0.81614 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.82 11.46 21.84 0.25 -39.57 16 2 C 0.03 1.34 5.50 85.29 0.47 1.81 16 3 Si 0.99 38.20 29.56 68.60 2.03 40.23 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 6 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.47 -25.98 9.14 23.46 0.21 -25.76 16 8 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 9 C 0.26 14.67 6.55 40.19 0.26 14.93 16 10 C -0.34 -17.59 9.83 22.87 0.22 -17.36 16 11 C -0.03 -1.40 10.15 22.39 0.23 -1.17 16 12 C -0.37 -16.30 9.34 22.73 0.21 -16.08 16 13 C 0.39 18.74 7.65 133.40 1.02 19.76 16 14 N -0.73 -26.82 5.72 -345.00 -1.97 -28.80 16 15 C 0.15 3.75 4.87 86.38 0.42 4.17 16 16 C -0.08 -1.41 5.46 29.85 0.16 -1.25 16 17 C -0.07 -1.11 5.13 -19.87 -0.10 -1.21 16 18 C -0.05 -0.48 9.70 22.27 0.22 -0.26 16 19 C -0.10 -0.78 10.05 22.27 0.22 -0.55 16 20 C -0.06 -0.75 9.56 22.27 0.21 -0.54 16 21 C -0.06 -1.26 6.85 36.37 0.25 -1.02 16 22 N 0.03 0.79 4.45 -46.46 -0.21 0.58 16 23 O -0.20 -6.03 18.45 18.87 0.35 -5.68 16 24 O -0.16 -4.25 18.45 18.89 0.35 -3.90 16 25 C -0.06 -1.16 9.21 22.27 0.21 -0.95 16 26 N -0.56 -31.32 7.89 -186.59 -1.47 -32.80 16 27 H 0.28 13.17 8.29 -92.71 -0.77 12.40 16 28 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 29 H 0.13 4.72 8.06 -2.91 -0.02 4.69 16 30 H 0.12 4.39 6.68 -2.91 -0.02 4.37 16 31 H 0.40 14.37 8.59 -92.70 -0.80 13.57 16 32 H 0.04 1.24 7.91 -2.39 -0.02 1.22 16 33 H 0.06 1.51 7.93 -2.38 -0.02 1.49 16 34 H 0.11 1.50 8.08 -2.39 -0.02 1.48 16 35 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 36 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 37 H 0.19 0.07 8.06 -2.91 -0.02 0.04 16 38 H 0.17 1.63 7.61 -2.91 -0.02 1.61 16 39 H 0.14 2.92 7.61 -2.91 -0.02 2.90 16 Total: -1.00 -71.34 347.15 3.84 -67.50 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.30 Total: 27.93 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 4.22 Total: -25.49 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -3.40 Total: -100.59 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.70 Total: -9.58 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -71.34 3.84 -67.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.179 kcal (2) G-P(sol) polarization free energy of solvation -71.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds