Wall clock time and date at job start Tue Mar 31 2020 10:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47253 * 46.67969 * 3 2 1 5 5 N 1.46501 * 109.47367 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99565 * 274.61542 * 5 4 3 7 7 C 1.50702 * 109.47076 * 269.99600 * 6 5 4 8 8 H 1.07995 * 119.99606 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99853 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00160 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99871 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47190 * 60.00139 * 11 9 7 13 13 H 1.48501 * 109.46976 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46875 * 299.99970 * 11 9 7 15 15 C 1.34769 * 120.00061 * 94.61267 * 5 4 3 16 16 O 1.21615 * 120.00234 * 4.97833 * 15 5 4 17 17 C 1.47395 * 119.99928 * 184.97356 * 15 5 4 18 18 C 1.39267 * 120.31023 * 303.73480 * 17 15 5 19 19 C 1.38749 * 120.14908 * 179.97438 * 18 17 15 20 20 O 1.35960 * 119.62615 * 179.97438 * 19 18 17 21 21 C 1.38479 * 120.75229 * 0.27727 * 19 18 17 22 22 C 1.38942 * 120.23199 * 359.48720 * 21 19 18 23 23 N 1.37805 * 133.30235 * 180.18550 * 22 21 19 24 24 H 0.96999 * 125.08578 * 0.25268 * 23 22 21 25 25 C 1.36677 * 109.83848 * 180.27349 * 23 22 21 26 26 C 1.34486 * 109.89160 * 0.02562 * 25 23 22 27 27 C 1.40657 * 119.58047 * 0.48486 * 22 21 19 28 28 H 1.09000 * 109.46636 * 286.67697 * 3 2 1 29 29 H 1.09003 * 109.46925 * 166.68073 * 3 2 1 30 30 H 1.09004 * 109.47312 * 59.99805 * 4 3 2 31 31 H 1.09007 * 109.47034 * 300.00381 * 4 3 2 32 32 H 1.08997 * 109.47005 * 29.99889 * 6 5 4 33 33 H 1.08998 * 109.46632 * 149.99532 * 6 5 4 34 34 H 0.97000 * 120.00003 * 180.02562 * 10 9 7 35 35 H 1.07998 * 119.92856 * 359.97438 * 18 17 15 36 36 H 0.96701 * 114.00018 * 89.99728 * 20 19 18 37 37 H 1.08007 * 119.87776 * 179.72222 * 21 19 18 38 38 H 1.08000 * 125.05293 * 179.97438 * 25 23 22 39 39 H 1.07996 * 126.49177 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.9887 -1.0494 5 7 4.5835 -0.9885 -1.0490 6 6 5.3160 0.0018 -1.8421 7 6 5.5677 -0.5470 -3.2229 8 1 5.2167 -1.5344 -3.4837 9 6 6.2460 0.2117 -4.1531 10 7 6.6739 1.4140 -3.8353 11 14 6.5573 -0.4682 -5.8649 12 1 5.2597 -0.7665 -6.5226 13 1 7.3010 0.5351 -6.6683 14 1 7.3593 -1.7140 -5.7643 15 6 5.2573 -1.8993 -0.3191 16 8 4.6526 -2.7770 0.2667 17 6 6.7270 -1.8318 -0.2308 18 6 7.5022 -1.8498 -1.3877 19 6 8.8855 -1.7856 -1.3008 20 8 9.6319 -1.8045 -2.4370 21 6 9.5147 -1.7087 -0.0696 22 6 8.7642 -1.6842 1.0994 23 7 9.0967 -1.6101 2.4346 24 1 10.0007 -1.5557 2.7819 25 6 7.9622 -1.6252 3.1967 26 6 6.8793 -1.7081 2.4035 27 6 7.3610 -1.7483 1.0251 28 1 2.9714 -0.2941 0.9845 29 1 2.9709 1.0009 -0.2368 30 1 2.7550 -0.6940 -2.0339 31 1 2.7555 -1.9890 -0.8127 32 1 4.7268 0.9158 -1.9161 33 1 6.2682 0.2215 -1.3592 34 1 7.1507 1.9479 -4.4898 35 1 7.0256 -1.9140 -2.3547 36 1 9.8094 -0.9283 -2.8056 37 1 10.5927 -1.6638 -0.0182 38 1 7.9388 -1.5784 4.2754 39 1 5.8487 -1.7390 2.7248 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155961514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:25 Heat of formation + Delta-G solvation = 11.428074 kcal Electronic energy + Delta-G solvation = -25796.944630 eV Core-core repulsion = 22091.603082 eV Total energy + Delta-G solvation = -3705.341548 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03796 -39.20097 -37.97637 -36.64825 -35.19257 -34.80842 -32.94488 -31.66138 -30.94331 -29.03851 -27.86219 -27.24833 -24.61984 -23.27517 -22.50223 -21.44591 -20.56156 -19.29753 -17.63897 -17.34007 -17.30638 -16.64858 -16.18681 -15.57488 -15.44664 -15.02068 -14.64662 -14.44010 -14.34357 -14.04252 -13.81557 -13.40215 -13.22388 -12.97185 -12.75192 -12.43408 -12.29387 -12.16525 -11.70089 -11.64055 -11.41772 -11.30729 -11.06008 -10.90554 -10.68697 -10.59890 -10.45280 -10.14534 -9.85697 -9.42447 -9.11697 -8.63381 -7.91083 -7.76576 -7.36977 -6.26994 -4.33517 1.17294 1.94042 2.85047 2.90381 2.96508 3.21784 3.23749 3.26042 3.27701 3.34758 3.68519 4.19003 4.27642 4.40043 4.71687 4.99716 5.02878 5.05510 5.28361 5.35716 5.49104 5.58300 5.67523 5.69665 5.73831 5.91445 6.10011 6.26202 6.29431 6.29899 6.60836 6.72558 6.89072 6.94264 7.05875 7.13524 7.33908 7.42323 7.66349 7.67404 7.72541 7.96080 8.11817 8.16576 8.68615 8.87630 9.32449 10.78731 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.008147 B = 0.007330 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3435.905979 B = 3818.786850 C = 6686.029163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.222 3.778 3 C -0.045 4.045 4 C 0.124 3.876 5 N -0.590 5.590 6 C 0.233 3.767 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.072 3.928 10 N -0.885 5.885 11 Si 0.888 3.112 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.270 1.270 15 C 0.568 3.432 16 O -0.559 6.559 17 C -0.061 4.061 18 C -0.104 4.104 19 C 0.125 3.875 20 O -0.497 6.497 21 C -0.152 4.152 22 C 0.096 3.904 23 N -0.599 5.599 24 H 0.412 0.588 25 C 0.041 3.959 26 C -0.191 4.191 27 C -0.078 4.078 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.266 0.734 35 H 0.169 0.831 36 H 0.392 0.608 37 H 0.121 0.879 38 H 0.168 0.832 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.576 -1.053 9.874 11.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.096 4.096 3 C -0.087 4.087 4 C -0.002 4.002 5 N -0.320 5.320 6 C 0.113 3.887 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.132 4.132 10 N -0.522 5.522 11 Si 0.715 3.285 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.195 1.195 15 C 0.357 3.643 16 O -0.439 6.439 17 C -0.065 4.065 18 C -0.123 4.123 19 C 0.079 3.921 20 O -0.308 6.308 21 C -0.173 4.173 22 C -0.010 4.010 23 N -0.203 5.203 24 H 0.248 0.752 25 C -0.085 4.085 26 C -0.216 4.216 27 C -0.083 4.083 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.186 0.814 36 H 0.248 0.752 37 H 0.139 0.861 38 H 0.185 0.815 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.748 -1.912 10.233 11.442 hybrid contribution 1.254 0.478 -0.996 1.672 sum 6.002 -1.433 9.237 11.109 Atomic orbital electron populations 1.81176 1.13080 1.09353 1.09226 1.29110 0.95117 0.92654 0.92726 1.19782 0.81281 1.04114 1.03502 1.21131 0.81496 0.99232 0.98313 1.48131 1.05180 1.33140 1.45565 1.19581 0.92621 0.86607 0.89842 1.21417 1.37171 1.02544 0.96737 0.91829 1.24879 0.95150 0.94645 0.98554 1.69918 1.37366 1.09567 1.35387 0.86693 0.78792 0.79116 0.83890 1.20109 1.21155 1.19516 1.18153 0.86938 0.81115 0.78122 1.90717 1.69843 1.35619 1.47716 1.18967 0.92879 1.03006 0.91616 1.22205 0.92533 0.97266 1.00337 1.17826 0.89186 1.00293 0.84795 1.84761 1.72285 1.34266 1.39440 1.20156 0.99076 1.08331 0.89742 1.17728 0.93611 1.05263 0.84374 1.41620 1.08364 1.66278 1.04070 0.75158 1.21746 0.85016 1.05021 0.96674 1.21662 0.98458 1.11000 0.90527 1.18899 0.91643 1.05164 0.92628 0.87409 0.86896 0.89302 0.89596 0.94366 0.93591 0.92396 0.81395 0.75178 0.86116 0.81525 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.48 18.54 42.15 0.78 -6.70 16 2 C 0.22 3.16 15.43 -20.76 -0.32 2.84 16 3 C -0.05 -0.58 6.03 -29.52 -0.18 -0.76 16 4 C 0.12 1.96 5.45 -4.04 -0.02 1.93 16 5 N -0.59 -11.05 2.46 -176.34 -0.43 -11.49 16 6 C 0.23 4.90 4.73 -5.19 -0.02 4.87 16 7 C -0.54 -12.51 6.56 -34.44 -0.23 -12.73 16 8 H 0.06 1.52 7.76 -52.49 -0.41 1.11 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.88 -21.94 13.29 55.43 0.74 -21.21 16 11 Si 0.89 19.04 29.54 -169.99 -5.02 14.02 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 15 C 0.57 11.33 7.06 -12.54 -0.09 11.24 16 16 O -0.56 -12.02 16.58 5.26 0.09 -11.93 16 17 C -0.06 -1.18 4.65 -104.77 -0.49 -1.67 16 18 C -0.10 -2.04 7.71 -39.01 -0.30 -2.34 16 19 C 0.12 2.19 6.68 -39.30 -0.26 1.93 16 20 O -0.50 -8.21 13.48 -19.61 -0.26 -8.48 16 21 C -0.15 -2.33 9.98 -39.23 -0.39 -2.72 16 22 C 0.10 1.48 7.26 -84.01 -0.61 0.87 16 23 N -0.60 -6.89 6.07 -10.65 -0.06 -6.96 16 24 H 0.41 3.25 8.96 -40.82 -0.37 2.88 16 25 C 0.04 0.46 11.82 -16.72 -0.20 0.27 16 26 C -0.19 -2.83 10.94 -37.77 -0.41 -3.24 16 27 C -0.08 -1.37 6.18 -104.82 -0.65 -2.02 16 28 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 31 H 0.09 1.40 7.23 -51.92 -0.38 1.02 16 32 H 0.04 0.82 8.07 -51.93 -0.42 0.41 16 33 H 0.05 1.03 6.13 -51.93 -0.32 0.71 16 34 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 35 H 0.17 3.63 5.19 -52.49 -0.27 3.36 16 36 H 0.39 5.17 9.06 45.56 0.41 5.59 16 37 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 38 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.14 2.06 8.06 -52.49 -0.42 1.63 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -30.19 346.50 -6.64 -36.82 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -3.42 Total: 10.60 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -4.27 Total: 0.09 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 1.02 Total: -46.35 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.18 Total: -20.41 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.19 -6.64 -36.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155961514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.253 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds