Wall clock time and date at job start Tue Mar 31 2020 10:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47253 * 46.67969 * 3 2 1 5 5 N 1.46501 * 109.47367 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99565 * 274.61542 * 5 4 3 7 7 C 1.50702 * 109.47076 * 269.99600 * 6 5 4 8 8 H 1.07995 * 119.99606 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99853 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00160 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99871 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47190 * 60.00139 * 11 9 7 13 13 H 1.48501 * 109.46976 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46875 * 299.99970 * 11 9 7 15 15 C 1.34769 * 120.00061 * 94.61267 * 5 4 3 16 16 O 1.21615 * 120.00234 * 4.97833 * 15 5 4 17 17 C 1.47395 * 119.99928 * 184.97356 * 15 5 4 18 18 C 1.39267 * 120.31023 * 303.73480 * 17 15 5 19 19 C 1.38749 * 120.14908 * 179.97438 * 18 17 15 20 20 O 1.35960 * 119.62615 * 179.97438 * 19 18 17 21 21 C 1.38479 * 120.75229 * 0.27727 * 19 18 17 22 22 C 1.38942 * 120.23199 * 359.48720 * 21 19 18 23 23 N 1.37805 * 133.30235 * 180.18550 * 22 21 19 24 24 H 0.96999 * 125.08578 * 0.25268 * 23 22 21 25 25 C 1.36677 * 109.83848 * 180.27349 * 23 22 21 26 26 C 1.34486 * 109.89160 * 0.02562 * 25 23 22 27 27 C 1.40657 * 119.58047 * 0.48486 * 22 21 19 28 28 H 1.09000 * 109.46636 * 286.67697 * 3 2 1 29 29 H 1.09003 * 109.46925 * 166.68073 * 3 2 1 30 30 H 1.09004 * 109.47312 * 59.99805 * 4 3 2 31 31 H 1.09007 * 109.47034 * 300.00381 * 4 3 2 32 32 H 1.08997 * 109.47005 * 29.99889 * 6 5 4 33 33 H 1.08998 * 109.46632 * 149.99532 * 6 5 4 34 34 H 0.97000 * 120.00003 * 180.02562 * 10 9 7 35 35 H 1.07998 * 119.92856 * 359.97438 * 18 17 15 36 36 H 0.96701 * 114.00018 * 89.99728 * 20 19 18 37 37 H 1.08007 * 119.87776 * 179.72222 * 21 19 18 38 38 H 1.08000 * 125.05293 * 179.97438 * 25 23 22 39 39 H 1.07996 * 126.49177 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.9887 -1.0494 5 7 4.5835 -0.9885 -1.0490 6 6 5.3160 0.0018 -1.8421 7 6 5.5677 -0.5470 -3.2229 8 1 5.2167 -1.5344 -3.4837 9 6 6.2460 0.2117 -4.1531 10 7 6.6739 1.4140 -3.8353 11 14 6.5573 -0.4682 -5.8649 12 1 5.2597 -0.7665 -6.5226 13 1 7.3010 0.5351 -6.6683 14 1 7.3593 -1.7140 -5.7643 15 6 5.2573 -1.8993 -0.3191 16 8 4.6526 -2.7770 0.2667 17 6 6.7270 -1.8318 -0.2308 18 6 7.5022 -1.8498 -1.3877 19 6 8.8855 -1.7856 -1.3008 20 8 9.6319 -1.8045 -2.4370 21 6 9.5147 -1.7087 -0.0696 22 6 8.7642 -1.6842 1.0994 23 7 9.0967 -1.6101 2.4346 24 1 10.0007 -1.5557 2.7819 25 6 7.9622 -1.6252 3.1967 26 6 6.8793 -1.7081 2.4035 27 6 7.3610 -1.7483 1.0251 28 1 2.9714 -0.2941 0.9845 29 1 2.9709 1.0009 -0.2368 30 1 2.7550 -0.6940 -2.0339 31 1 2.7555 -1.9890 -0.8127 32 1 4.7268 0.9158 -1.9161 33 1 6.2682 0.2215 -1.3592 34 1 7.1507 1.9479 -4.4898 35 1 7.0256 -1.9140 -2.3547 36 1 9.8094 -0.9283 -2.8056 37 1 10.5927 -1.6638 -0.0182 38 1 7.9388 -1.5784 4.2754 39 1 5.8487 -1.7390 2.7248 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155961514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:24 Heat of formation + Delta-G solvation = -8.270081 kcal Electronic energy + Delta-G solvation = -25797.798806 eV Core-core repulsion = 22091.603082 eV Total energy + Delta-G solvation = -3706.195724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.20794 -40.65517 -39.23645 -37.92668 -36.75646 -36.07179 -34.66858 -32.96703 -32.19314 -30.26295 -29.22127 -28.81440 -25.93605 -24.98954 -23.82840 -22.68678 -21.69335 -20.57361 -19.04431 -18.70815 -18.42593 -18.29641 -17.65134 -16.95729 -16.85035 -16.35178 -16.17544 -15.76037 -15.71365 -15.17536 -15.11100 -14.72430 -14.42718 -14.28357 -14.15080 -13.88960 -13.60476 -13.57105 -13.27173 -13.04389 -12.74199 -12.69048 -12.61588 -12.55590 -12.14481 -11.97267 -11.78785 -11.71552 -11.59326 -10.76137 -10.55552 -10.42171 -9.50665 -9.01317 -8.51688 -8.11959 -6.21718 -0.07862 0.63132 1.47297 1.50396 1.55492 1.59329 1.78730 1.79926 1.91305 2.19677 2.33165 2.48664 2.88509 3.16714 3.19021 3.50626 3.69599 4.06295 4.09523 4.13972 4.31227 4.42089 4.43932 4.55341 4.62904 4.76222 4.87188 4.95781 5.03666 5.09439 5.13564 5.35108 5.47772 5.58281 5.68967 5.74674 5.81704 5.89067 6.13431 6.15473 6.54054 6.55085 6.81617 6.87159 6.92938 7.29995 7.47173 8.93030 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.008147 B = 0.007330 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3435.905979 B = 3818.786850 C = 6686.029163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.030 4.030 4 C 0.120 3.880 5 N -0.588 5.588 6 C 0.251 3.749 7 C -0.539 4.539 8 H 0.049 0.951 9 C 0.041 3.959 10 N -0.907 5.907 11 Si 0.935 3.065 12 H -0.280 1.280 13 H -0.282 1.282 14 H -0.273 1.273 15 C 0.568 3.432 16 O -0.581 6.581 17 C -0.089 4.089 18 C -0.123 4.123 19 C 0.103 3.897 20 O -0.505 6.505 21 C -0.133 4.133 22 C 0.087 3.913 23 N -0.580 5.580 24 H 0.434 0.566 25 C 0.086 3.914 26 C -0.237 4.237 27 C -0.098 4.098 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.139 0.861 36 H 0.403 0.597 37 H 0.153 0.847 38 H 0.221 0.779 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.290 -0.719 12.035 14.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.071 4.071 3 C -0.071 4.071 4 C -0.005 4.005 5 N -0.317 5.317 6 C 0.131 3.869 7 C -0.577 4.577 8 H 0.068 0.932 9 C -0.161 4.161 10 N -0.546 5.546 11 Si 0.762 3.238 12 H -0.205 1.205 13 H -0.207 1.207 14 H -0.199 1.199 15 C 0.357 3.643 16 O -0.463 6.463 17 C -0.093 4.093 18 C -0.142 4.142 19 C 0.057 3.943 20 O -0.316 6.316 21 C -0.154 4.154 22 C -0.020 4.020 23 N -0.185 5.185 24 H 0.275 0.725 25 C -0.041 4.041 26 C -0.262 4.262 27 C -0.104 4.104 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.156 0.844 36 H 0.260 0.740 37 H 0.171 0.829 38 H 0.237 0.763 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.479 -1.567 12.395 14.074 hybrid contribution 0.784 0.330 -1.550 1.768 sum 7.263 -1.237 10.845 13.111 Atomic orbital electron populations 1.81202 1.14201 1.10676 1.10519 1.29164 0.95009 0.91425 0.91513 1.19680 0.80182 1.04051 1.03150 1.21233 0.79946 0.99914 0.99413 1.48060 1.06195 1.32474 1.44986 1.19216 0.92143 0.86620 0.88939 1.21505 1.36671 1.01809 0.97759 0.93239 1.25315 0.95152 0.94849 1.00776 1.69974 1.38218 1.10273 1.36127 0.85963 0.78255 0.78444 0.81170 1.20523 1.20723 1.19859 1.18362 0.87512 0.80728 0.77702 1.90680 1.70474 1.36369 1.48820 1.18997 0.92376 1.05211 0.92699 1.21972 0.93820 0.99257 0.99194 1.17880 0.88584 1.01883 0.85952 1.84726 1.71925 1.35419 1.39558 1.20352 1.00537 1.05735 0.88751 1.17806 0.92825 1.05319 0.86038 1.41679 1.09842 1.64488 1.02507 0.72514 1.22478 0.83415 0.99731 0.98501 1.21800 0.99763 1.14757 0.89843 1.19278 0.93088 1.04925 0.93100 0.85959 0.85192 0.89388 0.90189 0.94718 0.94957 0.92351 0.84353 0.73961 0.82946 0.76255 0.84048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.99 18.54 20.01 0.37 -15.62 16 2 C 0.25 6.84 15.43 89.44 1.38 8.22 16 3 C -0.03 -0.73 6.03 28.79 0.17 -0.56 16 4 C 0.12 3.82 5.45 86.38 0.47 4.29 16 5 N -0.59 -22.61 2.46 -830.07 -2.04 -24.65 16 6 C 0.25 10.84 4.73 85.63 0.41 11.25 16 7 C -0.54 -25.71 6.56 25.60 0.17 -25.54 16 8 H 0.05 2.46 7.76 -2.91 -0.02 2.44 16 9 C 0.04 1.97 5.46 84.65 0.46 2.44 16 10 N -0.91 -45.44 13.29 21.45 0.28 -45.16 16 11 Si 0.94 39.68 29.54 68.60 2.03 41.70 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 15 C 0.57 23.37 7.06 86.66 0.61 23.98 16 16 O -0.58 -25.71 16.58 -4.08 -0.07 -25.77 16 17 C -0.09 -3.56 4.65 -19.96 -0.09 -3.65 16 18 C -0.12 -5.01 7.71 22.64 0.17 -4.83 16 19 C 0.10 3.63 6.68 22.45 0.15 3.78 16 20 O -0.50 -16.74 13.48 -93.10 -1.26 -18.00 16 21 C -0.13 -3.83 9.98 22.50 0.22 -3.61 16 22 C 0.09 2.49 7.26 38.96 0.28 2.77 16 23 N -0.58 -10.83 6.07 -187.61 -1.14 -11.97 16 24 H 0.43 4.53 8.96 -92.71 -0.83 3.70 16 25 C 0.09 1.55 11.82 83.08 0.98 2.53 16 26 C -0.24 -6.56 10.94 23.45 0.26 -6.30 16 27 C -0.10 -3.38 6.18 -19.99 -0.12 -3.50 16 28 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.13 2.86 8.14 -2.39 -0.02 2.85 16 30 H 0.09 2.81 8.11 -2.39 -0.02 2.79 16 31 H 0.08 2.66 7.23 -2.38 -0.02 2.65 16 32 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 33 H 0.03 1.50 6.13 -2.39 -0.01 1.49 16 34 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 35 H 0.14 6.37 5.19 -2.91 -0.02 6.36 16 36 H 0.40 10.73 9.06 -74.06 -0.67 10.06 16 37 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 38 H 0.22 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -67.32 346.50 3.34 -63.98 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -0.37 Total: 24.25 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 5.53 Total: 11.24 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -2.52 Total: -97.40 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -1.32 Total: -43.77 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.70 kcal Total: -67.32 3.34 -63.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155961514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.709 kcal (2) G-P(sol) polarization free energy of solvation -67.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds