Wall clock time and date at job start Tue Mar 31 2020 10:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38664 * 120.41907 * 2 1 4 4 C 1.38630 * 118.42242 * 180.02562 * 3 2 1 5 5 C 1.38221 * 119.16084 * 0.02562 * 4 3 2 6 6 N 1.31854 * 120.76420 * 359.97438 * 5 4 3 7 7 C 1.31887 * 121.72493 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.61512 * 180.02562 * 7 6 5 9 9 N 1.46502 * 109.47253 * 90.00790 * 8 7 6 10 10 C 1.37652 * 120.00190 * 179.97438 * 9 8 7 11 11 C 1.40181 * 119.81398 * 359.97438 * 10 9 8 12 12 C 1.35796 * 120.18804 * 179.97438 * 11 10 9 13 13 C 1.41745 * 119.80973 * 0.02562 * 12 11 10 14 14 C 1.39516 * 120.18638 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00301 * 142.47210 * 14 13 12 16 16 C 1.46586 * 120.00001 * 322.46978 * 14 13 12 17 17 N 1.29500 * 119.99978 * 350.43174 * 16 14 13 18 18 Si 1.86796 * 120.00256 * 170.42899 * 16 14 13 19 19 H 1.48502 * 109.47513 * 89.99969 * 18 16 14 20 20 H 1.48498 * 109.47574 * 210.00234 * 18 16 14 21 21 H 1.48511 * 109.47242 * 330.00330 * 18 16 14 22 22 C 1.41719 * 119.62700 * 0.02562 * 13 12 11 23 23 N 1.48023 * 120.09275 * 179.97438 * 22 13 12 24 24 O 1.31704 * 119.99349 * 173.59677 * 23 22 13 25 25 O 1.31689 * 120.00204 * 353.59539 * 23 22 13 26 26 C 1.35826 * 119.80625 * 359.69776 * 22 13 12 27 27 H 1.08996 * 109.46818 * 269.97228 * 1 2 3 28 28 H 1.08991 * 109.46869 * 29.97483 * 1 2 3 29 29 H 1.08997 * 109.46838 * 149.97956 * 1 2 3 30 30 H 1.08006 * 120.79002 * 0.04532 * 3 2 1 31 31 H 1.08006 * 120.42146 * 180.02562 * 4 3 2 32 32 H 1.08001 * 119.62084 * 180.25986 * 5 4 3 33 33 H 1.09004 * 109.47073 * 210.00578 * 8 7 6 34 34 H 1.09002 * 109.47642 * 330.00274 * 8 7 6 35 35 H 0.97000 * 119.99582 * 359.97438 * 9 8 7 36 36 H 1.08002 * 119.90417 * 0.02562 * 11 10 9 37 37 H 1.08006 * 120.09395 * 180.02562 * 12 11 10 38 38 H 0.96997 * 119.99661 * 179.97438 * 17 16 14 39 39 H 1.08001 * 119.90266 * 180.28988 * 26 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 -0.0005 5 6 4.2256 -0.0823 -0.0016 6 7 3.5255 -1.1996 -0.0016 7 6 2.2067 -1.1916 -0.0001 8 6 1.4541 -2.4972 0.0005 9 7 1.2116 -2.9206 1.3818 10 6 0.5355 -4.0928 1.6339 11 6 0.0802 -4.8783 0.5658 12 6 -0.5871 -6.0364 0.8057 13 6 -0.8234 -6.4500 2.1407 14 6 -1.5077 -7.6386 2.3962 15 1 -1.2103 -8.2658 3.2235 16 6 -2.6304 -8.0362 1.5417 17 7 -3.1066 -7.2053 0.6700 18 14 -3.3742 -9.7414 1.7100 19 1 -4.4711 -9.7065 2.7104 20 1 -3.9149 -10.1774 0.3975 21 1 -2.3277 -10.6961 2.1561 22 6 -0.3605 -5.6492 3.2145 23 7 -0.6021 -6.0710 4.6126 24 8 -0.0643 -5.3947 5.6066 25 8 -1.3547 -7.1223 4.8626 26 6 0.3102 -4.4966 2.9569 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3633 0.8901 -0.5134 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6890 2.1423 0.0007 31 1 4.1736 2.0592 -0.0001 32 1 5.3046 -0.1286 0.0022 33 1 0.5010 -2.3674 -0.5124 34 1 2.0430 -3.2564 -0.5142 35 1 1.5275 -2.3748 2.1189 36 1 0.2615 -4.5619 -0.4508 37 1 -0.9368 -6.6406 -0.0184 38 1 -3.8493 -7.4685 0.1043 39 1 0.6677 -3.8875 3.7740 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161887176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:12 Heat of formation + Delta-G solvation = 52.660058 kcal Electronic energy + Delta-G solvation = -24662.930529 eV Core-core repulsion = 20959.376934 eV Total energy + Delta-G solvation = -3703.553595 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.42229 -40.42818 -38.31431 -37.14395 -35.67693 -34.54982 -34.13439 -33.30597 -32.03120 -31.16239 -28.79867 -27.91040 -26.51227 -25.80629 -23.66263 -23.29784 -22.68595 -21.60617 -20.06084 -18.75959 -18.13107 -17.77101 -17.51578 -17.44233 -16.56760 -16.50475 -15.88722 -15.85830 -15.56154 -15.16777 -14.93345 -14.65625 -14.61704 -14.06337 -13.97809 -13.79756 -13.68557 -13.62765 -13.31820 -13.10996 -12.87699 -12.78937 -12.30660 -12.06698 -11.93353 -11.55832 -11.14005 -10.99439 -10.94188 -10.69314 -10.59769 -10.39152 -10.07215 -9.83814 -9.43653 -8.57782 -6.67147 -0.94186 0.05111 0.32631 0.76237 1.06833 1.31454 1.46542 1.52021 1.61370 2.09741 2.25406 2.48956 3.02549 3.10328 3.27594 3.70899 3.92682 3.97658 4.05151 4.11483 4.25276 4.35892 4.42831 4.53477 4.57352 4.60942 4.69970 4.73628 4.78556 4.83999 5.02419 5.06030 5.20500 5.24751 5.29246 5.34512 5.48290 5.59732 5.76367 5.79134 6.00032 6.05287 6.35217 6.57148 6.78524 7.02969 7.18106 7.49476 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.003192 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.246336 B = 8768.711951 C = 9591.397404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.121 4.121 3 C -0.085 4.085 4 C -0.156 4.156 5 C 0.074 3.926 6 N -0.499 5.499 7 C 0.088 3.912 8 C 0.177 3.823 9 N -0.723 5.723 10 C 0.200 3.800 11 C -0.140 4.140 12 C -0.055 4.055 13 C 0.016 3.984 14 C -0.254 4.254 15 H 0.106 0.894 16 C 0.021 3.979 17 N -0.692 5.692 18 Si 1.002 2.998 19 H -0.265 1.265 20 H -0.225 1.225 21 H -0.254 1.254 22 C -0.029 4.029 23 N 0.018 4.982 24 O -0.502 6.502 25 O -0.417 6.417 26 C -0.214 4.214 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.175 0.825 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.395 0.605 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.333 0.667 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 12.848 -18.751 23.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.124 4.124 3 C -0.110 4.110 4 C -0.176 4.176 5 C -0.083 4.083 6 N -0.208 5.208 7 C -0.050 4.050 8 C 0.054 3.946 9 N -0.354 5.354 10 C 0.092 3.908 11 C -0.160 4.160 12 C -0.075 4.075 13 C 0.010 3.990 14 C -0.285 4.285 15 H 0.124 0.876 16 C -0.212 4.212 17 N -0.315 5.315 18 Si 0.818 3.182 19 H -0.190 1.190 20 H -0.147 1.147 21 H -0.177 1.177 22 C -0.144 4.144 23 N 0.380 4.620 24 O -0.606 6.606 25 O -0.537 6.537 26 C -0.241 4.241 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.180 0.820 31 H 0.185 0.815 32 H 0.192 0.808 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.229 0.771 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.148 0.852 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.339 12.237 -18.888 22.920 hybrid contribution -0.372 0.467 1.722 1.822 sum 3.967 12.704 -17.166 21.721 Atomic orbital electron populations 1.20889 0.89013 1.04343 1.03039 1.21002 0.98543 0.93478 0.99351 1.21912 0.94582 0.98670 0.95859 1.22548 0.95502 1.00251 0.99294 1.23207 1.01399 0.87724 0.96007 1.67451 1.08250 1.33336 1.11751 1.21033 0.89882 0.94783 0.99263 1.20203 0.98989 0.91800 0.83625 1.43796 1.62238 1.22339 1.07074 1.17264 0.94559 0.88191 0.90768 1.20846 1.01759 0.94990 0.98411 1.21222 0.95866 0.96529 0.93931 1.17735 0.96528 0.93298 0.91395 1.22754 1.01822 0.98840 1.05045 0.87634 1.28776 0.95965 1.04772 0.91675 1.68916 1.16275 1.37208 1.09085 0.84890 0.79070 0.73334 0.80916 1.19016 1.14684 1.17728 1.19965 1.16515 1.00147 0.77749 1.49353 1.05505 1.03507 1.03593 1.95901 1.64321 1.61774 1.38651 1.95844 1.43997 1.20731 1.93102 1.19157 1.10847 0.98330 0.95775 0.91206 0.89201 0.90552 0.81997 0.81524 0.80829 0.88653 0.90916 0.77138 0.82221 0.83147 0.85212 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 9.62 71.24 0.69 -1.08 16 2 C -0.12 -2.20 5.90 -19.77 -0.12 -2.32 16 3 C -0.08 -1.18 9.86 22.47 0.22 -0.96 16 4 C -0.16 -2.06 10.11 22.36 0.23 -1.83 16 5 C 0.07 1.32 11.18 84.69 0.95 2.27 16 6 N -0.50 -12.07 10.27 -183.89 -1.89 -13.96 16 7 C 0.09 1.98 6.15 42.54 0.26 2.24 16 8 C 0.18 4.16 4.76 85.63 0.41 4.57 16 9 N -0.72 -21.88 5.65 -342.66 -1.93 -23.82 16 10 C 0.20 7.60 6.67 39.17 0.26 7.86 16 11 C -0.14 -4.73 9.21 22.18 0.20 -4.53 16 12 C -0.06 -2.17 8.62 22.57 0.19 -1.97 16 13 C 0.02 0.80 5.48 -21.24 -0.12 0.68 16 14 C -0.25 -12.37 7.70 24.76 0.19 -12.18 16 15 H 0.11 5.71 6.05 -2.91 -0.02 5.69 16 16 C 0.02 0.80 5.39 87.22 0.47 1.27 16 17 N -0.69 -25.04 11.55 23.22 0.27 -24.77 16 18 Si 1.00 29.64 29.65 68.60 2.03 31.67 16 19 H -0.27 -8.45 7.11 99.48 0.71 -7.74 16 20 H -0.22 -5.24 7.11 99.48 0.71 -4.53 16 21 H -0.25 -7.88 7.11 99.48 0.71 -7.17 16 22 C -0.03 -1.63 6.89 36.67 0.25 -1.38 16 23 N 0.02 1.24 4.98 -45.74 -0.23 1.02 16 24 O -0.50 -35.86 19.14 3.51 0.07 -35.79 16 25 O -0.42 -28.46 16.32 3.53 0.06 -28.40 16 26 C -0.21 -10.61 9.35 22.17 0.21 -10.40 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.09 0.95 8.09 -2.39 -0.02 0.93 16 29 H 0.08 1.18 5.96 -2.39 -0.01 1.16 16 30 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 31 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 32 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.10 1.87 5.71 -2.39 -0.01 1.85 16 34 H 0.07 1.74 7.91 -2.39 -0.02 1.72 16 35 H 0.40 12.25 8.45 -92.71 -0.78 11.47 16 36 H 0.16 3.96 6.66 -2.91 -0.02 3.94 16 37 H 0.15 5.18 6.91 -2.91 -0.02 5.16 16 38 H 0.33 9.63 8.27 -92.71 -0.77 8.87 16 39 H 0.10 5.08 7.55 -2.91 -0.02 5.06 16 Total: -1.00 -82.75 339.64 3.01 -79.74 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.34 Total: 32.07 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 4.30 Total: -17.77 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -3.78 Total: -61.53 kcal Atomic # 8 Polarization: -64.32 SS G_CDS: 0.12 Total: -64.19 kcal Atomic # 14 Polarization: 29.64 SS G_CDS: 2.03 Total: 31.67 kcal Total: -82.75 3.01 -79.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161887176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.402 kcal (2) G-P(sol) polarization free energy of solvation -82.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds