Wall clock time and date at job start Tue Mar 31 2020 10:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86795 * 120.00274 * 2 1 4 4 H 1.48506 * 109.47296 * 270.00487 * 3 2 1 5 5 H 1.48504 * 109.47293 * 29.99922 * 3 2 1 6 6 H 1.48490 * 109.47345 * 150.00248 * 3 2 1 7 7 C 1.39864 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00291 * 193.50487 * 7 2 1 9 9 C 1.41200 * 119.99770 * 13.50629 * 7 2 1 10 10 C 1.40794 * 120.56343 * 207.46145 * 9 7 2 11 11 N 1.31469 * 120.39070 * 179.70298 * 10 9 7 12 12 C 1.32754 * 121.73665 * 0.56063 * 11 10 9 13 13 N 1.38406 * 119.43371 * 179.70824 * 12 11 10 14 14 C 1.46947 * 111.00085 * 295.73398 * 13 12 11 15 15 C 1.53057 * 109.38325 * 183.18121 * 14 13 12 16 16 N 1.46958 * 109.35851 * 301.63221 * 15 14 13 17 17 C 1.46904 * 110.99299 * 183.16692 * 16 15 14 18 18 C 1.52997 * 109.47173 * 66.18019 * 17 16 15 19 19 F 1.39903 * 109.46761 * 179.97438 * 18 17 16 20 20 C 1.46952 * 110.90053 * 59.29163 * 16 15 14 21 21 C 1.46959 * 110.99989 * 59.53755 * 13 12 11 22 22 C 1.39792 * 121.12188 * 359.43350 * 12 11 10 23 23 Cl 1.73606 * 120.25990 * 180.25460 * 22 12 11 24 24 C 1.36663 * 119.47780 * 0.27805 * 22 12 11 25 25 H 0.97007 * 119.99685 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.80495 * 359.97202 * 10 9 7 27 27 H 1.09000 * 109.49196 * 303.16021 * 14 13 12 28 28 H 1.09000 * 109.49200 * 63.20346 * 14 13 12 29 29 H 1.08992 * 109.48853 * 61.57470 * 15 14 13 30 30 H 1.08999 * 109.48696 * 181.64428 * 15 14 13 31 31 H 1.09010 * 109.46992 * 186.17871 * 17 16 15 32 32 H 1.08997 * 109.47239 * 306.17412 * 17 16 15 33 33 H 1.08998 * 109.47188 * 299.99135 * 18 17 16 34 34 H 1.09002 * 109.47283 * 59.99988 * 18 17 16 35 35 H 1.09000 * 109.48881 * 180.72305 * 20 16 15 36 36 H 1.08993 * 109.49239 * 60.65085 * 20 16 15 37 37 H 1.08999 * 109.48302 * 296.77222 * 21 13 12 38 38 H 1.08995 * 109.48750 * 56.82235 * 21 13 12 39 39 H 1.08004 * 120.79880 * 180.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4406 2.6527 0.7000 6 1 3.5406 1.4401 0.6999 7 6 2.0083 -1.2113 -0.0005 8 1 3.0659 -1.2243 0.2179 9 6 1.3316 -2.4170 -0.2867 10 6 1.7940 -3.6393 0.2372 11 7 1.1579 -4.7592 -0.0267 12 6 0.0760 -4.7833 -0.7956 13 7 -0.5529 -5.9902 -1.0471 14 6 0.3245 -6.8935 -1.8045 15 6 -0.4333 -8.1828 -2.1303 16 7 -0.8820 -8.8132 -0.8809 17 6 -1.5496 -10.0942 -1.1480 18 6 -0.5344 -11.0908 -1.7111 19 9 -1.1701 -12.3109 -1.9648 20 6 -1.7595 -7.9099 -0.1236 21 6 -1.0012 -6.6209 0.2023 22 6 -0.4420 -3.6096 -1.3510 23 17 -1.8620 -3.6661 -2.3481 24 6 0.1786 -2.4175 -1.1031 25 1 -0.4850 0.8401 0.0004 26 1 2.6741 -3.6564 0.8630 27 1 0.6329 -6.4090 -2.7309 28 1 1.2051 -7.1304 -1.2074 29 1 -1.2986 -7.9491 -2.7505 30 1 0.2252 -8.8660 -2.6668 31 1 -1.9677 -10.4863 -0.2207 32 1 -2.3501 -9.9428 -1.8720 33 1 -0.1164 -10.6988 -2.6383 34 1 0.2662 -11.2423 -0.9870 35 1 -2.0678 -8.3945 0.8028 36 1 -2.6398 -7.6727 -0.7209 37 1 -0.1357 -6.8550 0.8222 38 1 -1.6590 -5.9374 0.7390 39 1 -0.2036 -1.4978 -1.5209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165102423.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:35 Heat of formation + Delta-G solvation = -18.302203 kcal Electronic energy + Delta-G solvation = -23603.942897 eV Core-core repulsion = 19907.252087 eV Total energy + Delta-G solvation = -3696.690810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.105 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.76173 -39.62752 -38.19128 -35.50417 -35.40271 -33.86497 -30.94497 -30.68483 -30.41724 -29.04120 -26.28203 -24.49684 -23.39621 -22.32505 -21.81271 -21.07439 -19.43575 -17.63348 -17.02001 -16.36546 -16.04292 -15.72478 -15.46281 -15.13797 -14.73371 -14.60982 -14.29457 -14.25861 -13.90148 -13.32095 -13.00914 -12.67295 -12.46420 -12.26253 -11.93895 -11.85138 -11.52175 -11.47283 -11.37685 -11.03797 -10.98939 -10.91599 -10.76316 -10.62418 -10.42476 -10.38573 -9.88180 -9.54052 -8.63606 -8.40404 -8.24906 -7.80810 -7.59482 -7.02848 -4.70477 2.28840 2.68200 2.93174 2.96417 2.98278 3.28788 3.69981 3.71669 4.32630 4.40768 4.51625 4.67294 4.84332 5.07213 5.22852 5.26010 5.37976 5.41326 5.53633 5.65725 5.68361 5.74897 5.77188 5.90073 5.97327 6.14032 6.34584 6.43456 6.50464 6.58979 6.78504 6.89931 6.93407 6.98410 7.02748 7.50590 7.54289 7.66101 8.01070 8.24280 8.44667 8.50261 9.28772 9.87348 Molecular weight = 313.11amu Principal moments of inertia in cm(-1) A = 0.031398 B = 0.003082 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.550021 B = 9081.475587 C = 9520.247783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.439 4.439 8 H 0.088 0.912 9 C 0.075 3.925 10 C -0.009 4.009 11 N -0.469 5.469 12 C 0.138 3.862 13 N -0.461 5.461 14 C 0.068 3.932 15 C 0.054 3.946 16 N -0.536 5.536 17 C 0.025 3.975 18 C 0.063 3.937 19 F -0.220 7.220 20 C 0.062 3.938 21 C 0.067 3.933 22 C -0.009 4.009 23 Cl -0.099 7.099 24 C -0.131 4.131 25 H 0.288 0.712 26 H 0.132 0.868 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.993 -10.170 -2.492 10.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.149 4.149 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.468 4.468 8 H 0.106 0.894 9 C 0.070 3.930 10 C -0.174 4.174 11 N -0.180 5.180 12 C -0.090 4.090 13 N -0.183 5.183 14 C -0.060 4.060 15 C -0.074 4.074 16 N -0.261 5.261 17 C -0.104 4.104 18 C 0.007 3.993 19 F -0.202 7.202 20 C -0.066 4.066 21 C -0.061 4.061 22 C -0.039 4.039 23 Cl -0.070 7.070 24 C -0.158 4.158 25 H 0.099 0.901 26 H 0.150 0.850 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.075 -10.833 -2.232 11.254 hybrid contribution -0.212 1.613 -0.369 1.668 sum -2.287 -9.220 -2.601 9.849 Atomic orbital electron populations 1.69792 1.07680 1.30147 1.32992 1.26038 0.94930 1.01889 0.92037 0.86130 0.80374 0.79718 0.79599 1.18992 1.20009 1.18302 1.19576 0.97064 0.90274 1.39898 0.89366 1.18490 0.91434 0.93940 0.89150 1.22414 1.02354 0.87874 1.04727 1.67161 1.06793 1.31575 1.12447 1.18433 0.95806 0.89159 1.05604 1.59778 1.37354 1.01955 1.19258 1.22049 0.94483 0.91060 0.98438 1.22300 0.99187 0.95489 0.90400 1.62055 1.39912 1.03386 1.20797 1.22585 0.95637 0.90763 1.01408 1.21975 0.95284 0.79825 1.02171 1.92750 1.84643 1.46877 1.95895 1.22188 0.94173 0.92646 0.97568 1.22048 0.99022 0.93401 0.91592 1.21145 0.90251 0.94710 0.97787 1.98258 1.40668 1.98914 1.69192 1.21346 0.98428 0.95740 1.00242 0.90135 0.85031 0.90916 0.93219 0.93857 0.90668 0.89804 0.93780 0.90726 0.89821 0.90582 0.93945 0.93040 0.90834 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.62 10.93 55.54 0.61 -18.01 16 2 C 0.07 1.62 5.23 -17.34 -0.09 1.53 16 3 Si 0.92 17.04 29.58 -169.99 -5.03 12.01 16 4 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 5 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 6 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 7 C -0.44 -10.47 9.07 -37.85 -0.34 -10.81 16 8 H 0.09 1.98 7.88 -52.49 -0.41 1.57 16 9 C 0.07 1.83 5.56 -106.65 -0.59 1.24 16 10 C -0.01 -0.22 10.97 -16.74 -0.18 -0.40 16 11 N -0.47 -10.71 9.56 -11.75 -0.11 -10.82 16 12 C 0.14 3.03 5.33 -155.05 -0.83 2.20 16 13 N -0.46 -8.59 4.04 -172.92 -0.70 -9.28 16 14 C 0.07 1.12 5.45 -3.77 -0.02 1.10 16 15 C 0.05 0.71 5.41 -3.76 -0.02 0.69 16 16 N -0.54 -6.83 4.71 -234.46 -1.10 -7.93 16 17 C 0.02 0.26 5.41 -3.82 -0.02 0.24 16 18 C 0.06 0.60 7.49 37.16 0.28 0.88 16 19 F -0.22 -2.51 17.36 2.25 0.04 -2.47 16 20 C 0.06 0.84 5.61 -3.77 -0.02 0.82 16 21 C 0.07 1.14 5.41 -3.76 -0.02 1.12 16 22 C -0.01 -0.20 6.32 -39.57 -0.25 -0.45 16 23 Cl -0.10 -1.99 28.43 -51.86 -1.47 -3.46 16 24 C -0.13 -3.19 8.49 -39.00 -0.33 -3.53 16 25 H 0.29 6.22 8.30 -40.82 -0.34 5.88 16 26 H 0.13 2.82 8.06 -52.48 -0.42 2.40 16 27 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 28 H 0.05 0.89 7.99 -51.93 -0.41 0.48 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.83 6.34 -51.93 -0.33 0.50 16 31 H 0.08 0.82 8.03 -51.92 -0.42 0.41 16 32 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.07 0.65 6.49 -51.93 -0.34 0.32 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.95 7.90 -51.93 -0.41 0.54 16 38 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 39 H 0.14 3.46 6.32 -52.48 -0.33 3.13 16 LS Contribution 335.86 15.07 5.06 5.06 Total: -1.00 -25.33 335.86 -10.32 -35.65 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.16 Total: 4.62 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -2.44 Total: -5.36 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -1.31 Total: -46.05 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -1.47 Total: -3.46 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -25.33 -10.32 -35.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165102423.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.347 kcal (2) G-P(sol) polarization free energy of solvation -25.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds