Wall clock time and date at job start Tue Mar 31 2020 10:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86795 * 120.00274 * 2 1 4 4 H 1.48506 * 109.47296 * 270.00487 * 3 2 1 5 5 H 1.48504 * 109.47293 * 29.99922 * 3 2 1 6 6 H 1.48490 * 109.47345 * 150.00248 * 3 2 1 7 7 C 1.39864 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00291 * 193.50487 * 7 2 1 9 9 C 1.41200 * 119.99770 * 13.50629 * 7 2 1 10 10 C 1.40794 * 120.56343 * 207.46145 * 9 7 2 11 11 N 1.31469 * 120.39070 * 179.70298 * 10 9 7 12 12 C 1.32754 * 121.73665 * 0.56063 * 11 10 9 13 13 N 1.38406 * 119.43371 * 179.70824 * 12 11 10 14 14 C 1.46947 * 111.00085 * 295.73398 * 13 12 11 15 15 C 1.53057 * 109.38325 * 183.18121 * 14 13 12 16 16 N 1.46958 * 109.35851 * 301.63221 * 15 14 13 17 17 C 1.46904 * 110.99299 * 183.16692 * 16 15 14 18 18 C 1.52997 * 109.47173 * 66.18019 * 17 16 15 19 19 F 1.39903 * 109.46761 * 179.97438 * 18 17 16 20 20 C 1.46952 * 110.90053 * 59.29163 * 16 15 14 21 21 C 1.46959 * 110.99989 * 59.53755 * 13 12 11 22 22 C 1.39792 * 121.12188 * 359.43350 * 12 11 10 23 23 Cl 1.73606 * 120.25990 * 180.25460 * 22 12 11 24 24 C 1.36663 * 119.47780 * 0.27805 * 22 12 11 25 25 H 0.97007 * 119.99685 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.80495 * 359.97202 * 10 9 7 27 27 H 1.09000 * 109.49196 * 303.16021 * 14 13 12 28 28 H 1.09000 * 109.49200 * 63.20346 * 14 13 12 29 29 H 1.08992 * 109.48853 * 61.57470 * 15 14 13 30 30 H 1.08999 * 109.48696 * 181.64428 * 15 14 13 31 31 H 1.09010 * 109.46992 * 186.17871 * 17 16 15 32 32 H 1.08997 * 109.47239 * 306.17412 * 17 16 15 33 33 H 1.08998 * 109.47188 * 299.99135 * 18 17 16 34 34 H 1.09002 * 109.47283 * 59.99988 * 18 17 16 35 35 H 1.09000 * 109.48881 * 180.72305 * 20 16 15 36 36 H 1.08993 * 109.49239 * 60.65085 * 20 16 15 37 37 H 1.08999 * 109.48302 * 296.77222 * 21 13 12 38 38 H 1.08995 * 109.48750 * 56.82235 * 21 13 12 39 39 H 1.08004 * 120.79880 * 180.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4406 2.6527 0.7000 6 1 3.5406 1.4401 0.6999 7 6 2.0083 -1.2113 -0.0005 8 1 3.0659 -1.2243 0.2179 9 6 1.3316 -2.4170 -0.2867 10 6 1.7940 -3.6393 0.2372 11 7 1.1579 -4.7592 -0.0267 12 6 0.0760 -4.7833 -0.7956 13 7 -0.5529 -5.9902 -1.0471 14 6 0.3245 -6.8935 -1.8045 15 6 -0.4333 -8.1828 -2.1303 16 7 -0.8820 -8.8132 -0.8809 17 6 -1.5496 -10.0942 -1.1480 18 6 -0.5344 -11.0908 -1.7111 19 9 -1.1701 -12.3109 -1.9648 20 6 -1.7595 -7.9099 -0.1236 21 6 -1.0012 -6.6209 0.2023 22 6 -0.4420 -3.6096 -1.3510 23 17 -1.8620 -3.6661 -2.3481 24 6 0.1786 -2.4175 -1.1031 25 1 -0.4850 0.8401 0.0004 26 1 2.6741 -3.6564 0.8630 27 1 0.6329 -6.4090 -2.7309 28 1 1.2051 -7.1304 -1.2074 29 1 -1.2986 -7.9491 -2.7505 30 1 0.2252 -8.8660 -2.6668 31 1 -1.9677 -10.4863 -0.2207 32 1 -2.3501 -9.9428 -1.8720 33 1 -0.1164 -10.6988 -2.6383 34 1 0.2662 -11.2423 -0.9870 35 1 -2.0678 -8.3945 0.8028 36 1 -2.6398 -7.6727 -0.7209 37 1 -0.1357 -6.8550 0.8222 38 1 -1.6590 -5.9374 0.7390 39 1 -0.2036 -1.4978 -1.5209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165102423.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:35 Heat of formation + Delta-G solvation = -31.996397 kcal Electronic energy + Delta-G solvation = -23604.536722 eV Core-core repulsion = 19907.252087 eV Total energy + Delta-G solvation = -3697.284634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.105 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.57890 -41.13715 -39.62100 -37.15483 -36.89505 -35.49827 -32.47428 -32.12678 -31.82372 -30.44061 -27.69455 -25.97614 -24.62628 -23.93563 -23.10751 -22.55406 -20.71607 -19.41526 -18.36271 -17.46808 -17.19402 -17.15743 -16.76904 -16.43410 -16.03637 -15.95262 -15.74995 -15.38322 -15.07457 -14.73851 -14.41307 -14.22263 -13.93642 -13.69215 -13.45567 -13.28178 -12.98618 -12.93323 -12.63836 -12.55804 -12.37616 -12.19412 -11.96694 -11.95104 -11.78784 -11.61720 -11.40775 -11.22455 -10.35334 -10.06485 -9.50311 -9.39029 -9.28856 -8.75077 -6.52658 0.52138 0.85427 1.40665 1.48000 1.52813 1.54529 2.16424 2.59319 2.70898 2.95788 3.47612 3.68867 3.85419 3.90333 4.10862 4.17458 4.20407 4.33594 4.39747 4.39750 4.51411 4.59810 4.65205 4.68160 4.73187 4.81769 4.95786 4.97148 4.99914 5.03916 5.09826 5.18178 5.24000 5.70721 5.81305 5.89899 5.99680 6.15156 6.23343 6.49352 6.66428 6.75602 7.47805 8.17898 Molecular weight = 313.11amu Principal moments of inertia in cm(-1) A = 0.031398 B = 0.003082 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.550021 B = 9081.475587 C = 9520.247783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.034 3.966 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.464 4.464 8 H 0.095 0.905 9 C 0.052 3.948 10 C -0.020 4.020 11 N -0.476 5.476 12 C 0.143 3.857 13 N -0.464 5.464 14 C 0.069 3.931 15 C 0.063 3.937 16 N -0.542 5.542 17 C 0.029 3.971 18 C 0.065 3.935 19 F -0.230 7.230 20 C 0.072 3.928 21 C 0.070 3.930 22 C -0.021 4.021 23 Cl -0.077 7.077 24 C -0.146 4.146 25 H 0.295 0.705 26 H 0.144 0.856 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.034 0.966 38 H 0.060 0.940 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.081 -11.053 -2.810 11.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.183 4.183 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.493 4.493 8 H 0.113 0.887 9 C 0.047 3.953 10 C -0.184 4.184 11 N -0.187 5.187 12 C -0.086 4.086 13 N -0.187 5.187 14 C -0.058 4.058 15 C -0.065 4.065 16 N -0.268 5.268 17 C -0.099 4.099 18 C 0.009 3.991 19 F -0.211 7.211 20 C -0.056 4.056 21 C -0.058 4.058 22 C -0.051 4.051 23 Cl -0.048 7.048 24 C -0.173 4.173 25 H 0.106 0.894 26 H 0.162 0.838 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.168 -11.745 -2.551 12.212 hybrid contribution -0.256 1.797 -0.288 1.837 sum -2.423 -9.948 -2.839 10.625 Atomic orbital electron populations 1.69844 1.09151 1.31430 1.33435 1.26888 0.95565 1.04931 0.90938 0.85054 0.79092 0.75184 0.79639 1.18637 1.19403 1.17631 1.19864 0.97568 0.90918 1.40949 0.88688 1.18770 0.91984 0.94817 0.89743 1.22642 1.02922 0.87825 1.05010 1.67241 1.07237 1.31386 1.12818 1.18778 0.95178 0.90387 1.04272 1.59856 1.37241 1.01510 1.20109 1.22060 0.94188 0.92220 0.97342 1.22232 0.99262 0.94232 0.90754 1.62018 1.40229 1.03981 1.20531 1.22590 0.95761 0.89503 1.02089 1.22013 0.95007 0.79128 1.02904 1.92735 1.84885 1.47531 1.95976 1.22083 0.93473 0.91226 0.98830 1.22026 0.98409 0.94811 0.90525 1.21291 0.91004 0.94646 0.98162 1.98249 1.39274 1.98880 1.68445 1.21296 0.99152 0.95807 1.01029 0.89448 0.83817 0.91637 0.94800 0.93840 0.88022 0.88902 0.93505 0.89627 0.89130 0.88390 0.93880 0.94754 0.92136 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.36 10.93 21.82 0.24 -39.12 16 2 C 0.03 1.55 5.23 85.22 0.45 2.00 16 3 Si 0.99 34.58 29.58 68.60 2.03 36.61 16 4 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 5 H -0.27 -9.08 7.11 99.48 0.71 -8.38 16 6 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 7 C -0.46 -22.52 9.07 23.39 0.21 -22.31 16 8 H 0.10 4.31 7.88 -2.91 -0.02 4.29 16 9 C 0.05 2.61 5.56 -21.18 -0.12 2.49 16 10 C -0.02 -0.97 10.97 85.37 0.94 -0.03 16 11 N -0.48 -22.08 9.56 -191.07 -1.83 -23.91 16 12 C 0.14 6.32 5.33 133.32 0.71 7.03 16 13 N -0.46 -17.15 4.04 -701.00 -2.84 -19.98 16 14 C 0.07 2.24 5.45 86.31 0.47 2.71 16 15 C 0.06 1.52 5.41 86.31 0.47 1.98 16 16 N -0.54 -12.47 4.71 -895.71 -4.22 -16.68 16 17 C 0.03 0.52 5.41 86.30 0.47 0.98 16 18 C 0.06 1.05 7.49 71.98 0.54 1.59 16 19 F -0.23 -4.68 17.36 44.97 0.78 -3.90 16 20 C 0.07 1.80 5.61 86.31 0.48 2.28 16 21 C 0.07 2.34 5.41 86.31 0.47 2.81 16 22 C -0.02 -0.96 6.32 22.28 0.14 -0.82 16 23 Cl -0.08 -3.08 28.43 -2.72 -0.08 -3.16 16 24 C -0.15 -7.32 8.49 22.65 0.19 -7.13 16 25 H 0.29 12.87 8.30 -92.70 -0.77 12.10 16 26 H 0.14 6.28 8.06 -2.91 -0.02 6.26 16 27 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 28 H 0.03 1.20 7.99 -2.39 -0.02 1.18 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.93 6.34 -2.39 -0.02 1.91 16 31 H 0.09 1.53 8.03 -2.38 -0.02 1.51 16 32 H 0.05 0.84 8.12 -2.39 -0.02 0.82 16 33 H 0.09 1.22 6.49 -2.39 -0.02 1.20 16 34 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 2.05 8.07 -2.39 -0.02 2.03 16 36 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.03 1.26 7.90 -2.39 -0.02 1.24 16 38 H 0.06 2.15 8.13 -2.39 -0.02 2.13 16 39 H 0.12 6.47 6.32 -2.91 -0.02 6.45 16 Total: -1.00 -54.77 335.86 0.57 -54.20 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 1.06 Total: 22.35 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 5.41 Total: -6.40 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -8.64 Total: -99.69 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.78 Total: -3.90 kcal Atomic # 14 Polarization: 34.58 SS G_CDS: 2.03 Total: 36.61 kcal Atomic # 17 Polarization: -3.08 SS G_CDS: -0.08 Total: -3.16 kcal Total: -54.77 0.57 -54.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165102423.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.203 kcal (2) G-P(sol) polarization free energy of solvation -54.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds