Wall clock time and date at job start Tue Mar 31 2020 11:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.47350 * 2 1 4 4 N 1.31758 * 119.05257 * 89.99807 * 3 2 1 5 5 C 1.32672 * 121.00086 * 180.02562 * 4 3 2 6 6 Cl 1.73600 * 120.43208 * 180.02562 * 5 4 3 7 7 C 1.38467 * 119.14052 * 0.02562 * 5 4 3 8 8 F 1.35100 * 120.85830 * 180.02562 * 7 5 4 9 9 C 1.39693 * 118.28874 * 359.97438 * 7 5 4 10 10 N 1.38703 * 120.53565 * 179.97438 * 9 7 5 11 11 C 1.46499 * 119.99984 * 179.72432 * 10 9 7 12 12 H 1.08997 * 109.41397 * 35.27532 * 11 10 9 13 13 C 1.52958 * 109.41408 * 155.13866 * 11 10 9 14 14 C 1.53233 * 109.40695 * 183.70478 * 13 11 10 15 15 C 1.51268 * 108.53484 * 305.36976 * 14 13 11 16 16 C 1.37876 * 120.84829 * 231.32452 * 15 14 13 17 17 N 1.31510 * 120.00185 * 0.02562 * 16 15 14 18 18 Si 1.86800 * 119.99752 * 180.02562 * 16 15 14 19 19 H 1.48500 * 109.46988 * 90.00014 * 18 16 15 20 20 H 1.48503 * 109.46988 * 209.99730 * 18 16 15 21 21 H 1.48499 * 109.47448 * 330.00034 * 18 16 15 22 22 C 1.51274 * 118.30111 * 51.34844 * 15 14 13 23 23 C 1.52964 * 109.41687 * 275.41762 * 11 10 9 24 24 N 1.31772 * 119.05672 * 270.27731 * 3 2 1 25 25 H 1.08998 * 109.46996 * 300.00134 * 1 2 3 26 26 H 1.09004 * 109.46922 * 59.99739 * 1 2 3 27 27 H 1.08994 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46996 * 239.99866 * 2 1 3 29 29 H 1.09004 * 109.46922 * 120.00261 * 2 1 3 30 30 H 0.97001 * 120.00166 * 0.02562 * 10 9 7 31 31 H 1.09000 * 109.48175 * 303.68206 * 13 11 10 32 32 H 1.08992 * 109.48329 * 63.70794 * 13 11 10 33 33 H 1.09010 * 109.62438 * 65.08234 * 14 13 11 34 34 H 1.08998 * 109.62854 * 185.46005 * 14 13 11 35 35 H 0.96994 * 120.00280 * 180.02562 * 17 16 15 36 36 H 1.08994 * 109.62762 * 68.36213 * 22 15 14 37 37 H 1.08997 * 109.62288 * 188.74569 * 22 15 14 38 38 H 1.08996 * 109.48012 * 296.27885 * 23 11 10 39 39 H 1.09000 * 109.48048 * 56.31292 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2457 2.0240 1.1518 5 6 2.6873 3.2743 1.1969 6 17 2.9638 4.0546 2.7228 7 6 2.9246 3.9487 0.0111 8 9 3.3750 5.2224 0.0166 9 6 2.6875 3.2778 -1.1910 10 7 2.9091 3.9092 -2.4060 11 6 2.6623 3.1925 -3.6596 12 1 1.8040 2.5320 -3.5364 13 6 2.3725 4.2005 -4.7730 14 6 2.0236 3.4491 -6.0620 15 6 3.1443 2.4819 -6.3731 16 6 3.7326 2.4589 -7.6199 17 7 3.3210 3.2852 -8.5565 18 14 5.1144 1.2541 -7.9784 19 1 4.5428 -0.0140 -8.4985 20 1 6.0290 1.8374 -8.9926 21 1 5.8697 0.9811 -6.7294 22 6 3.6026 1.5401 -5.2816 23 6 3.8948 2.3622 -4.0219 24 7 2.2405 2.0260 -1.1519 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.2317 4.8237 -2.4256 31 1 1.5333 4.8322 -4.4820 32 1 3.2532 4.8204 -4.9403 33 1 1.0927 2.8988 -5.9245 34 1 1.9113 4.1595 -6.8810 35 1 3.7347 3.2688 -9.4337 36 1 2.8179 0.8133 -5.0719 37 1 4.5062 1.0213 -5.6014 38 1 4.7388 3.0264 -4.2076 39 1 4.1353 1.6901 -3.1981 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167843095.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:41 Heat of formation + Delta-G solvation = -21.995882 kcal Electronic energy + Delta-G solvation = -23931.558783 eV Core-core repulsion = 20234.707804 eV Total energy + Delta-G solvation = -3696.850980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.105 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.00809 -41.08115 -37.97418 -37.06189 -35.26134 -33.95708 -32.73096 -31.49411 -29.97782 -29.64616 -27.23948 -25.05202 -24.03936 -22.21229 -21.71636 -21.49018 -19.74185 -18.53343 -17.86400 -17.22731 -16.36757 -16.32564 -15.71308 -14.96491 -14.72073 -14.52262 -14.17790 -14.03032 -13.52617 -13.45617 -13.06773 -12.82655 -12.69778 -12.34137 -12.21223 -12.05194 -11.76896 -11.67176 -11.28268 -11.19536 -11.11492 -11.06462 -10.79297 -10.63446 -10.25922 -10.08874 -9.68054 -9.48594 -9.37173 -9.04560 -8.77912 -8.54619 -7.97977 -6.17475 -4.09071 0.56363 1.02594 1.36439 2.98396 3.22939 3.31594 3.31867 3.48206 3.69995 3.85103 4.24596 4.32192 4.59333 5.06066 5.09665 5.14225 5.17060 5.43845 5.57521 5.73359 5.75905 5.86564 5.94455 6.06474 6.13448 6.36541 6.42005 6.57159 6.59723 6.67983 6.78223 6.89421 7.03499 7.22546 7.32967 7.44935 7.57417 7.63146 7.74141 8.06435 8.29326 8.88191 9.47060 10.91933 Molecular weight = 313.11amu Principal moments of inertia in cm(-1) A = 0.018834 B = 0.003674 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.292663 B = 7619.399027 C = 8323.838589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C 0.378 3.622 4 N -0.544 5.544 5 C 0.225 3.775 6 Cl -0.009 7.009 7 C -0.077 4.077 8 F -0.119 7.119 9 C 0.444 3.556 10 N -0.684 5.684 11 C 0.159 3.841 12 H 0.087 0.913 13 C -0.117 4.117 14 C 0.015 3.985 15 C -0.490 4.490 16 C 0.077 3.923 17 N -0.889 5.889 18 Si 0.887 3.113 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.264 1.264 22 C -0.017 4.017 23 C -0.111 4.111 24 N -0.541 5.541 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.411 0.589 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.007 0.993 34 H 0.061 0.939 35 H 0.265 0.735 36 H 0.021 0.979 37 H 0.036 0.964 38 H 0.050 0.950 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.371 -1.408 17.494 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.093 4.093 3 C 0.109 3.891 4 N -0.267 5.267 5 C 0.055 3.945 6 Cl 0.020 6.980 7 C -0.109 4.109 8 F -0.098 7.098 9 C 0.194 3.806 10 N -0.312 5.312 11 C 0.057 3.943 12 H 0.105 0.895 13 C -0.155 4.155 14 C -0.022 4.022 15 C -0.509 4.509 16 C -0.126 4.126 17 N -0.527 5.527 18 Si 0.715 3.285 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.190 1.190 22 C -0.055 4.055 23 C -0.150 4.150 24 N -0.266 5.266 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.248 0.752 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.657 -2.195 17.196 17.538 hybrid contribution 1.450 1.124 -0.034 1.835 sum -1.206 -1.071 17.162 17.238 Atomic orbital electron populations 1.21692 0.93236 1.02653 1.02600 1.20403 0.96969 0.87209 1.04682 1.22966 0.88312 0.96618 0.81186 1.67686 1.20205 1.07932 1.30851 1.21746 0.95117 0.90789 0.86883 1.98425 1.93675 1.77563 1.28363 1.18217 1.15811 0.83648 0.93258 1.91498 1.87335 1.34110 1.96882 1.18668 0.87762 0.88407 0.85732 1.45451 1.66803 1.16265 1.02699 1.21286 0.99225 0.94144 0.79695 0.89490 1.21984 0.99610 0.97064 0.96850 1.19321 0.95016 0.95827 0.92074 1.20034 1.17833 1.17878 0.95190 1.24843 0.96699 0.95358 0.95670 1.69823 1.42151 1.36699 1.03993 0.86681 0.82535 0.81445 0.77823 1.20306 1.21644 1.18975 1.19772 0.97194 0.95465 0.93041 1.21913 0.96363 0.98231 0.98532 1.68029 1.20888 1.07596 1.30103 0.92352 0.91969 0.91271 0.88435 0.88871 0.75177 0.94485 0.92595 0.97466 0.92014 0.92511 0.96107 0.94575 0.93122 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.90 37.16 0.37 -0.96 16 2 C -0.05 -0.56 6.37 -27.88 -0.18 -0.73 16 3 C 0.38 5.21 6.90 -157.25 -1.08 4.13 16 4 N -0.54 -7.68 10.32 -7.90 -0.08 -7.77 16 5 C 0.23 3.17 7.33 -17.10 -0.13 3.04 16 6 Cl -0.01 -0.11 28.87 -51.86 -1.50 -1.60 16 7 C -0.08 -1.12 7.36 -38.95 -0.29 -1.41 16 8 F -0.12 -1.66 16.40 2.25 0.04 -1.62 16 9 C 0.44 6.89 7.49 -154.60 -1.16 5.73 16 10 N -0.68 -10.63 5.21 -53.76 -0.28 -10.91 16 11 C 0.16 2.86 2.38 -67.97 -0.16 2.70 16 12 H 0.09 1.66 7.57 -51.93 -0.39 1.27 16 13 C -0.12 -2.26 5.40 -26.63 -0.14 -2.40 16 14 C 0.02 0.36 5.96 -27.48 -0.16 0.20 16 15 C -0.49 -12.27 5.51 -98.92 -0.55 -12.82 16 16 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 17 N -0.89 -24.72 12.73 55.43 0.71 -24.01 16 18 Si 0.89 20.43 27.53 -169.99 -4.68 15.75 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.26 -5.91 6.11 56.52 0.35 -5.56 16 22 C -0.02 -0.37 5.60 -27.48 -0.15 -0.52 16 23 C -0.11 -2.18 5.51 -26.63 -0.15 -2.33 16 24 N -0.54 -8.42 9.25 -9.91 -0.09 -8.51 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.41 5.72 8.17 -40.82 -0.33 5.38 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.01 0.16 8.14 -51.92 -0.42 -0.26 16 34 H 0.06 1.59 7.08 -51.93 -0.37 1.23 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.04 0.81 4.59 -51.93 -0.24 0.57 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -26.93 337.10 -9.86 -36.79 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.17 Total: 0.26 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -3.88 Total: -3.45 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.25 Total: -51.21 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.68 Total: 15.75 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.50 Total: -1.60 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.93 -9.86 -36.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167843095.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.790 kcal (2) G-P(sol) polarization free energy of solvation -26.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds