Wall clock time and date at job start Tue Mar 31 2020 11:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.47350 * 2 1 4 4 N 1.31758 * 119.05257 * 89.99807 * 3 2 1 5 5 C 1.32672 * 121.00086 * 180.02562 * 4 3 2 6 6 Cl 1.73600 * 120.43208 * 180.02562 * 5 4 3 7 7 C 1.38467 * 119.14052 * 0.02562 * 5 4 3 8 8 F 1.35100 * 120.85830 * 180.02562 * 7 5 4 9 9 C 1.39693 * 118.28874 * 359.97438 * 7 5 4 10 10 N 1.38703 * 120.53565 * 179.97438 * 9 7 5 11 11 C 1.46499 * 119.99984 * 179.72432 * 10 9 7 12 12 H 1.08997 * 109.41397 * 35.27532 * 11 10 9 13 13 C 1.52958 * 109.41408 * 155.13866 * 11 10 9 14 14 C 1.53233 * 109.40695 * 183.70478 * 13 11 10 15 15 C 1.51268 * 108.53484 * 305.36976 * 14 13 11 16 16 C 1.37876 * 120.84829 * 231.32452 * 15 14 13 17 17 N 1.31510 * 120.00185 * 0.02562 * 16 15 14 18 18 Si 1.86800 * 119.99752 * 180.02562 * 16 15 14 19 19 H 1.48500 * 109.46988 * 90.00014 * 18 16 15 20 20 H 1.48503 * 109.46988 * 209.99730 * 18 16 15 21 21 H 1.48499 * 109.47448 * 330.00034 * 18 16 15 22 22 C 1.51274 * 118.30111 * 51.34844 * 15 14 13 23 23 C 1.52964 * 109.41687 * 275.41762 * 11 10 9 24 24 N 1.31772 * 119.05672 * 270.27731 * 3 2 1 25 25 H 1.08998 * 109.46996 * 300.00134 * 1 2 3 26 26 H 1.09004 * 109.46922 * 59.99739 * 1 2 3 27 27 H 1.08994 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46996 * 239.99866 * 2 1 3 29 29 H 1.09004 * 109.46922 * 120.00261 * 2 1 3 30 30 H 0.97001 * 120.00166 * 0.02562 * 10 9 7 31 31 H 1.09000 * 109.48175 * 303.68206 * 13 11 10 32 32 H 1.08992 * 109.48329 * 63.70794 * 13 11 10 33 33 H 1.09010 * 109.62438 * 65.08234 * 14 13 11 34 34 H 1.08998 * 109.62854 * 185.46005 * 14 13 11 35 35 H 0.96994 * 120.00280 * 180.02562 * 17 16 15 36 36 H 1.08994 * 109.62762 * 68.36213 * 22 15 14 37 37 H 1.08997 * 109.62288 * 188.74569 * 22 15 14 38 38 H 1.08996 * 109.48012 * 296.27885 * 23 11 10 39 39 H 1.09000 * 109.48048 * 56.31292 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2457 2.0240 1.1518 5 6 2.6873 3.2743 1.1969 6 17 2.9638 4.0546 2.7228 7 6 2.9246 3.9487 0.0111 8 9 3.3750 5.2224 0.0166 9 6 2.6875 3.2778 -1.1910 10 7 2.9091 3.9092 -2.4060 11 6 2.6623 3.1925 -3.6596 12 1 1.8040 2.5320 -3.5364 13 6 2.3725 4.2005 -4.7730 14 6 2.0236 3.4491 -6.0620 15 6 3.1443 2.4819 -6.3731 16 6 3.7326 2.4589 -7.6199 17 7 3.3210 3.2852 -8.5565 18 14 5.1144 1.2541 -7.9784 19 1 4.5428 -0.0140 -8.4985 20 1 6.0290 1.8374 -8.9926 21 1 5.8697 0.9811 -6.7294 22 6 3.6026 1.5401 -5.2816 23 6 3.8948 2.3622 -4.0219 24 7 2.2405 2.0260 -1.1519 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.2317 4.8237 -2.4256 31 1 1.5333 4.8322 -4.4820 32 1 3.2532 4.8204 -4.9403 33 1 1.0927 2.8988 -5.9245 34 1 1.9113 4.1595 -6.8810 35 1 3.7347 3.2688 -9.4337 36 1 2.8179 0.8133 -5.0719 37 1 4.5062 1.0213 -5.6014 38 1 4.7388 3.0264 -4.2076 39 1 4.1353 1.6901 -3.1981 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167843095.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:41 Heat of formation + Delta-G solvation = -35.454288 kcal Electronic energy + Delta-G solvation = -23932.142384 eV Core-core repulsion = 20234.707804 eV Total energy + Delta-G solvation = -3697.434580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.105 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.10873 -42.19412 -39.43905 -38.10847 -36.68633 -34.93129 -34.28299 -32.93230 -31.51973 -30.98324 -28.85827 -26.02459 -25.33748 -23.62964 -23.30964 -22.79022 -21.32267 -19.76139 -19.02242 -18.36226 -18.00759 -17.48173 -16.94955 -16.41340 -16.33712 -15.75405 -15.23140 -15.08475 -14.83541 -14.69445 -14.54956 -14.37234 -14.06325 -13.85437 -13.61785 -13.34049 -13.01742 -12.79830 -12.69683 -12.62331 -12.53371 -12.13953 -12.07152 -11.92773 -11.91848 -11.77055 -11.33042 -10.90983 -10.78291 -10.58918 -10.45615 -10.43765 -9.23562 -8.16281 -6.10453 -0.52954 -0.11888 0.30985 1.39916 1.43355 1.50320 1.78060 2.38090 2.41706 2.60543 2.82087 3.07607 3.15589 3.48096 3.97598 4.10174 4.16899 4.35111 4.39017 4.48762 4.53890 4.70165 4.86518 4.93115 4.96396 5.05770 5.06399 5.13892 5.16916 5.24990 5.27690 5.37836 5.44645 5.58156 5.62911 5.74927 5.80933 5.88495 6.30206 6.35773 6.94109 6.96003 7.47979 8.94328 Molecular weight = 313.11amu Principal moments of inertia in cm(-1) A = 0.018834 B = 0.003674 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.292663 B = 7619.399027 C = 8323.838589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 C 0.373 3.627 4 N -0.545 5.545 5 C 0.221 3.779 6 Cl 0.010 6.990 7 C -0.080 4.080 8 F -0.117 7.117 9 C 0.435 3.565 10 N -0.683 5.683 11 C 0.177 3.823 12 H 0.079 0.921 13 C -0.105 4.105 14 C 0.012 3.988 15 C -0.497 4.497 16 C 0.024 3.976 17 N -0.931 5.931 18 Si 0.937 3.063 19 H -0.275 1.275 20 H -0.295 1.295 21 H -0.251 1.251 22 C -0.018 4.018 23 C -0.103 4.103 24 N -0.558 5.558 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.419 0.581 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.003 0.997 34 H 0.030 0.970 35 H 0.262 0.738 36 H 0.025 0.975 37 H 0.035 0.965 38 H 0.045 0.955 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.080 -2.345 19.770 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.092 4.092 3 C 0.106 3.894 4 N -0.267 5.267 5 C 0.050 3.950 6 Cl 0.039 6.961 7 C -0.112 4.112 8 F -0.096 7.096 9 C 0.187 3.813 10 N -0.313 5.313 11 C 0.073 3.927 12 H 0.097 0.903 13 C -0.144 4.144 14 C -0.026 4.026 15 C -0.516 4.516 16 C -0.174 4.174 17 N -0.571 5.571 18 Si 0.763 3.237 19 H -0.200 1.200 20 H -0.221 1.221 21 H -0.175 1.175 22 C -0.056 4.056 23 C -0.142 4.142 24 N -0.283 5.283 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.129 0.871 30 H 0.258 0.742 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.022 0.978 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.365 -3.139 19.520 19.911 hybrid contribution 1.283 1.415 -0.619 2.008 sum -1.082 -1.724 18.900 19.010 Atomic orbital electron populations 1.21663 0.92339 1.03919 1.01690 1.20583 0.97570 0.85333 1.05734 1.23628 0.87454 0.97678 0.80666 1.67810 1.20083 1.07909 1.30936 1.21959 0.94563 0.90867 0.87596 1.98432 1.93467 1.77212 1.27009 1.18169 1.16059 0.83807 0.93137 1.91505 1.87320 1.33864 1.96864 1.18754 0.88054 0.88716 0.85780 1.45088 1.67678 1.16533 1.01959 1.20828 0.98151 0.93405 0.80292 0.90264 1.21749 1.00160 0.97052 0.95392 1.19267 0.94725 0.95414 0.93223 1.20625 1.17401 1.17914 0.95703 1.25564 0.99039 0.96935 0.95863 1.69957 1.43869 1.38845 1.04389 0.85870 0.80273 0.79588 0.77930 1.20038 1.22146 1.17506 1.19769 0.97114 0.95315 0.93363 1.21775 0.96828 0.98141 0.97488 1.68077 1.21391 1.07769 1.31107 0.92562 0.93502 0.88954 0.88088 0.87056 0.74219 0.92536 0.93005 0.97825 0.95103 0.92849 0.95694 0.94704 0.93642 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.90 71.98 0.71 -1.54 16 2 C -0.05 -0.98 6.37 29.85 0.19 -0.79 16 3 C 0.37 9.55 6.90 138.77 0.96 10.51 16 4 N -0.55 -14.22 10.32 -178.90 -1.85 -16.07 16 5 C 0.22 5.77 7.33 84.62 0.62 6.39 16 6 Cl 0.01 0.22 28.87 -2.72 -0.08 0.14 16 7 C -0.08 -2.17 7.36 22.68 0.17 -2.01 16 8 F -0.12 -3.03 16.40 44.97 0.74 -2.29 16 9 C 0.44 12.76 7.49 133.13 1.00 13.76 16 10 N -0.68 -20.06 5.21 -324.00 -1.69 -21.75 16 11 C 0.18 6.12 2.38 44.97 0.11 6.23 16 12 H 0.08 2.92 7.57 -2.39 -0.02 2.90 16 13 C -0.11 -3.99 5.40 30.66 0.17 -3.83 16 14 C 0.01 0.56 5.96 30.11 0.18 0.74 16 15 C -0.50 -24.91 5.51 -16.17 -0.09 -25.00 16 16 C 0.02 1.29 5.46 84.65 0.46 1.76 16 17 N -0.93 -53.14 12.73 21.45 0.27 -52.87 16 18 Si 0.94 41.91 27.53 68.60 1.89 43.80 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 21 H -0.25 -10.53 6.11 99.48 0.61 -9.93 16 22 C -0.02 -0.76 5.60 30.11 0.17 -0.59 16 23 C -0.10 -3.88 5.51 30.66 0.17 -3.71 16 24 N -0.56 -16.38 9.25 -185.28 -1.71 -18.09 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.42 10.92 8.17 -92.71 -0.76 10.17 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 34 H 0.03 1.63 7.08 -2.39 -0.02 1.61 16 35 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.03 1.50 4.59 -2.39 -0.01 1.49 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -57.21 337.10 2.61 -54.60 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.23 Total: 10.61 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 4.81 Total: 1.92 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -4.98 Total: -108.78 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.74 Total: -2.29 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.89 Total: 43.80 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -0.08 Total: 0.14 kcal Total: -57.21 2.61 -54.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167843095.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.141 kcal (2) G-P(sol) polarization free energy of solvation -57.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds