Wall clock time and date at job start Tue Mar 31 2020 10:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36063 * 117.00267 * 2 1 4 4 C 1.38560 * 120.00005 * 0.02562 * 3 2 1 5 5 C 1.38189 * 120.07183 * 180.02562 * 4 3 2 6 6 C 1.38880 * 120.07042 * 359.97267 * 5 4 3 7 7 N 1.39931 * 120.00382 * 180.02562 * 6 5 4 8 8 C 1.38257 * 119.99917 * 6.26233 * 7 6 5 9 9 C 1.39025 * 119.99625 * 60.57590 * 8 7 6 10 10 H 1.07999 * 119.99844 * 198.58012 * 9 8 7 11 11 C 1.40821 * 120.00137 * 18.57858 * 9 8 7 12 12 N 1.30345 * 119.99725 * 9.19643 * 11 9 8 13 13 Si 1.86795 * 120.00263 * 189.19733 * 11 9 8 14 14 H 1.48498 * 109.46915 * 60.00070 * 13 11 9 15 15 H 1.48504 * 109.47551 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47190 * 300.00171 * 13 11 9 17 17 C 1.41167 * 120.00507 * 240.57683 * 8 7 6 18 18 C 1.43199 * 120.00337 * 174.74831 * 17 8 7 19 19 N 9.13645 * 91.44238 * 355.30071 * 2 1 3 20 20 C 1.43207 * 119.99849 * 354.47090 * 17 8 7 21 21 N 8.10152 * 114.44620 * 336.82921 * 2 1 3 22 22 C 1.38857 * 119.99918 * 0.27739 * 6 5 4 23 23 C 1.50698 * 120.04003 * 179.70012 * 22 6 5 24 24 C 1.38502 * 119.92108 * 359.44830 * 22 6 5 25 25 O 1.35999 * 120.02979 * 180.24948 * 24 22 6 26 26 C 1.42898 * 117.00022 * 270.31948 * 25 24 22 27 27 H 1.09004 * 109.46748 * 59.99772 * 1 2 3 28 28 H 1.09000 * 109.47865 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47172 * 300.00529 * 1 2 3 30 30 H 1.07994 * 119.96377 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.95822 * 179.97438 * 5 4 3 32 32 H 0.96997 * 120.00321 * 186.26922 * 7 6 5 33 33 H 0.97004 * 119.99674 * 184.98749 * 12 11 9 34 34 H 1.08995 * 109.47034 * 90.00041 * 23 22 6 35 35 H 1.09006 * 109.47519 * 210.00241 * 23 22 6 36 36 H 1.09001 * 109.47057 * 329.99813 * 23 22 6 37 37 H 1.08999 * 109.47124 * 60.00498 * 26 25 24 38 38 H 1.09005 * 109.46925 * 180.02562 * 26 25 24 39 39 H 1.08994 * 109.47438 * 300.00254 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2123 0.0000 4 6 1.2922 2.3744 0.0005 5 6 1.9181 3.6064 0.0000 6 6 3.3048 3.6825 -0.0005 7 7 3.9371 4.9308 -0.0005 8 6 3.1878 6.0853 0.1306 9 6 2.4198 6.2896 1.2713 10 1 1.6184 7.0135 1.2602 11 6 2.6867 5.5526 2.4412 12 7 3.7579 4.8138 2.5158 13 14 1.5057 5.6339 3.8862 14 1 0.1666 5.1553 3.4585 15 1 2.0106 4.7747 4.9872 16 1 1.4013 7.0368 4.3619 17 6 3.2024 7.0565 -0.8937 18 6 2.3416 8.1979 -0.8107 19 7 1.6590 9.1029 -0.7483 20 6 4.0824 6.9034 -2.0131 21 7 4.7817 6.7803 -2.9020 22 6 4.0639 2.5198 -0.0063 23 6 5.5686 2.6013 -0.0137 24 6 3.4364 1.2851 0.0000 25 8 4.1777 0.1449 -0.0005 26 6 4.5312 -0.3985 -1.2740 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2138 2.3173 0.0005 31 1 1.3281 4.5110 0.0000 32 1 4.9011 4.9862 -0.0926 33 1 3.9054 4.2503 3.2915 34 1 5.9365 2.6191 1.0122 35 1 5.9771 1.7331 -0.5311 36 1 5.8807 3.5105 -0.5275 37 1 5.1177 0.3323 -1.8308 38 1 5.1199 -1.3048 -1.1315 39 1 3.6255 -0.6379 -1.8310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:49 Heat of formation + Delta-G solvation = 12.596000 kcal Electronic energy + Delta-G solvation = -25904.122216 eV Core-core repulsion = 22198.831313 eV Total energy + Delta-G solvation = -3705.290903 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.23888 -38.32946 -37.78393 -36.08457 -34.96602 -34.70297 -33.33428 -31.96616 -30.35918 -28.69831 -27.18696 -27.09423 -26.43632 -25.64763 -22.44030 -20.96023 -20.79528 -18.95665 -17.77404 -17.37945 -17.06754 -16.46246 -16.12133 -15.71485 -15.41681 -14.96045 -14.68323 -14.47908 -13.86223 -13.42536 -13.17395 -12.99215 -12.78203 -12.60976 -12.41786 -12.31151 -11.98459 -11.80410 -11.70847 -11.66134 -11.63580 -11.55507 -11.50600 -11.48870 -11.16600 -10.97947 -10.91063 -10.57403 -10.49428 -10.07033 -9.68679 -9.29556 -8.19800 -8.09293 -7.60816 -6.42499 -5.45567 1.63604 1.86716 2.34072 2.70543 2.74581 2.88666 3.39330 3.59459 3.82004 3.89934 4.02575 4.04957 4.25356 4.33821 4.54971 5.13490 5.16788 5.24811 5.28898 5.43830 5.49977 5.50337 5.55604 5.57328 5.64269 5.74611 5.78081 5.91595 6.06334 6.11065 6.21624 6.33062 6.44553 6.59751 6.78743 6.86233 6.97417 7.06630 7.32309 7.48892 7.67350 7.79849 8.02098 8.36152 8.55650 8.96865 9.12490 9.21428 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.005779 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.220640 B = 4843.842458 C = 5839.763208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.042 3.958 4 C -0.158 4.158 5 C -0.145 4.145 6 C 0.243 3.757 7 N -0.660 5.660 8 C 0.384 3.616 9 C -0.378 4.378 10 H 0.108 0.892 11 C 0.073 3.927 12 N -0.709 5.709 13 Si 0.919 3.081 14 H -0.252 1.252 15 H -0.269 1.269 16 H -0.254 1.254 17 C -0.317 4.317 18 C 0.325 3.675 19 N -0.536 5.536 20 C 0.311 3.689 21 N -0.537 5.537 22 C -0.139 4.139 23 C -0.092 4.092 24 C 0.098 3.902 25 O -0.325 6.325 26 C 0.037 3.963 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.125 0.875 31 H 0.139 0.861 32 H 0.401 0.599 33 H 0.303 0.697 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 -12.659 3.233 13.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C -0.004 4.004 4 C -0.178 4.178 5 C -0.167 4.167 6 C 0.140 3.860 7 N -0.283 5.283 8 C 0.279 3.721 9 C -0.406 4.406 10 H 0.126 0.874 11 C -0.159 4.159 12 N -0.327 5.327 13 Si 0.741 3.259 14 H -0.176 1.176 15 H -0.193 1.193 16 H -0.177 1.177 17 C -0.335 4.335 18 C 0.018 3.982 19 N -0.218 5.218 20 C 0.004 3.996 21 N -0.220 5.220 22 C -0.144 4.144 23 C -0.149 4.149 24 C 0.053 3.947 25 O -0.242 6.242 26 C -0.058 4.058 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.142 0.858 31 H 0.156 0.844 32 H 0.239 0.761 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.849 -11.767 2.279 12.128 hybrid contribution -0.416 -0.139 0.853 0.959 sum -2.265 -11.906 3.131 12.518 Atomic orbital electron populations 1.22925 0.79727 1.02938 1.00995 1.86075 1.20096 1.26794 1.90096 1.19007 0.91203 0.84443 1.05747 1.20820 0.99257 0.91464 1.06253 1.20768 0.93032 0.97915 1.04967 1.17020 0.90903 0.84262 0.93821 1.41431 1.08545 1.01271 1.77024 1.16713 0.84858 0.81998 0.88521 1.20267 1.13048 1.14941 0.92309 0.87397 1.26399 0.95394 0.92938 1.01184 1.69488 1.20318 1.12895 1.29968 0.86068 0.80782 0.80542 0.78541 1.17551 1.19295 1.17733 1.12990 1.17227 1.02146 1.01176 1.24691 0.91063 0.90935 0.91549 1.81031 1.15905 1.13559 1.11310 1.25250 0.91301 0.91765 0.91308 1.81136 1.16323 1.11417 1.13088 1.19229 0.96098 0.90221 1.08845 1.20409 0.90858 1.01379 1.02282 1.17327 0.85867 0.85349 1.06142 1.86045 1.70820 1.38865 1.28455 1.22896 0.99506 0.98079 0.85307 0.93178 0.89081 0.93117 0.85750 0.84364 0.76105 0.88497 0.91035 0.92203 0.92291 0.93865 0.89580 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.32 16 2 O -0.32 -4.87 10.28 -34.55 -0.36 -5.23 16 3 C 0.04 0.70 6.70 -39.12 -0.26 0.44 16 4 C -0.16 -2.55 9.03 -39.48 -0.36 -2.90 16 5 C -0.14 -2.56 8.50 -39.36 -0.33 -2.90 16 6 C 0.24 4.40 4.95 -83.69 -0.41 3.99 16 7 N -0.66 -12.32 3.25 -8.16 -0.03 -12.34 16 8 C 0.38 7.67 4.99 -83.56 -0.42 7.26 16 9 C -0.38 -7.42 7.00 -38.31 -0.27 -7.68 16 10 H 0.11 2.16 6.96 -52.49 -0.37 1.79 16 11 C 0.07 1.34 4.71 -17.21 -0.08 1.26 16 12 N -0.71 -13.04 10.78 55.59 0.60 -12.44 16 13 Si 0.92 14.60 29.58 -169.99 -5.03 9.58 16 14 H -0.25 -4.01 7.11 56.52 0.40 -3.61 16 15 H -0.27 -4.22 7.11 56.52 0.40 -3.81 16 16 H -0.25 -4.14 7.11 56.52 0.40 -3.73 16 17 C -0.32 -6.77 5.88 -104.93 -0.62 -7.39 16 18 C 0.33 7.31 13.88 -22.50 -0.31 6.99 16 19 N -0.54 -12.54 18.53 41.81 0.77 -11.76 16 20 C 0.31 6.91 14.82 -22.42 -0.33 6.58 16 21 N -0.54 -12.44 18.55 41.90 0.78 -11.67 16 22 C -0.14 -2.39 5.91 -104.30 -0.62 -3.00 16 23 C -0.09 -1.40 9.39 36.00 0.34 -1.06 16 24 C 0.10 1.69 5.71 -39.14 -0.22 1.46 16 25 O -0.33 -5.31 9.42 -34.34 -0.32 -5.63 16 26 C 0.04 0.46 10.76 101.05 1.09 1.55 16 27 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 30 H 0.12 1.68 6.29 -52.49 -0.33 1.35 16 31 H 0.14 2.51 6.20 -52.49 -0.33 2.18 16 32 H 0.40 7.33 6.76 -40.82 -0.28 7.05 16 33 H 0.30 5.23 8.29 -40.82 -0.34 4.89 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.83 6.29 -51.93 -0.33 0.50 16 36 H 0.06 0.88 6.47 -51.93 -0.34 0.54 16 37 H 0.04 0.52 7.22 -51.93 -0.37 0.14 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -25.18 346.11 -4.14 -29.31 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -3.95 Total: 9.07 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -1.82 Total: 5.90 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 2.12 Total: -48.22 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -0.68 Total: -10.86 kcal Atomic # 14 Polarization: 14.60 SS G_CDS: -5.03 Total: 9.58 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -25.18 -4.14 -29.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.910 kcal (2) G-P(sol) polarization free energy of solvation -25.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds