Wall clock time and date at job start Tue Mar 31 2020 10:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36063 * 117.00267 * 2 1 4 4 C 1.38560 * 120.00005 * 0.02562 * 3 2 1 5 5 C 1.38189 * 120.07183 * 180.02562 * 4 3 2 6 6 C 1.38880 * 120.07042 * 359.97267 * 5 4 3 7 7 N 1.39931 * 120.00382 * 180.02562 * 6 5 4 8 8 C 1.38257 * 119.99917 * 6.26233 * 7 6 5 9 9 C 1.39025 * 119.99625 * 60.57590 * 8 7 6 10 10 H 1.07999 * 119.99844 * 198.58012 * 9 8 7 11 11 C 1.40821 * 120.00137 * 18.57858 * 9 8 7 12 12 N 1.30345 * 119.99725 * 9.19643 * 11 9 8 13 13 Si 1.86795 * 120.00263 * 189.19733 * 11 9 8 14 14 H 1.48498 * 109.46915 * 60.00070 * 13 11 9 15 15 H 1.48504 * 109.47551 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47190 * 300.00171 * 13 11 9 17 17 C 1.41167 * 120.00507 * 240.57683 * 8 7 6 18 18 C 1.43199 * 120.00337 * 174.74831 * 17 8 7 19 19 N 9.13645 * 91.44238 * 355.30071 * 2 1 3 20 20 C 1.43207 * 119.99849 * 354.47090 * 17 8 7 21 21 N 8.10152 * 114.44620 * 336.82921 * 2 1 3 22 22 C 1.38857 * 119.99918 * 0.27739 * 6 5 4 23 23 C 1.50698 * 120.04003 * 179.70012 * 22 6 5 24 24 C 1.38502 * 119.92108 * 359.44830 * 22 6 5 25 25 O 1.35999 * 120.02979 * 180.24948 * 24 22 6 26 26 C 1.42898 * 117.00022 * 270.31948 * 25 24 22 27 27 H 1.09004 * 109.46748 * 59.99772 * 1 2 3 28 28 H 1.09000 * 109.47865 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47172 * 300.00529 * 1 2 3 30 30 H 1.07994 * 119.96377 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.95822 * 179.97438 * 5 4 3 32 32 H 0.96997 * 120.00321 * 186.26922 * 7 6 5 33 33 H 0.97004 * 119.99674 * 184.98749 * 12 11 9 34 34 H 1.08995 * 109.47034 * 90.00041 * 23 22 6 35 35 H 1.09006 * 109.47519 * 210.00241 * 23 22 6 36 36 H 1.09001 * 109.47057 * 329.99813 * 23 22 6 37 37 H 1.08999 * 109.47124 * 60.00498 * 26 25 24 38 38 H 1.09005 * 109.46925 * 180.02562 * 26 25 24 39 39 H 1.08994 * 109.47438 * 300.00254 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2123 0.0000 4 6 1.2922 2.3744 0.0005 5 6 1.9181 3.6064 0.0000 6 6 3.3048 3.6825 -0.0005 7 7 3.9371 4.9308 -0.0005 8 6 3.1878 6.0853 0.1306 9 6 2.4198 6.2896 1.2713 10 1 1.6184 7.0135 1.2602 11 6 2.6867 5.5526 2.4412 12 7 3.7579 4.8138 2.5158 13 14 1.5057 5.6339 3.8862 14 1 0.1666 5.1553 3.4585 15 1 2.0106 4.7747 4.9872 16 1 1.4013 7.0368 4.3619 17 6 3.2024 7.0565 -0.8937 18 6 2.3416 8.1979 -0.8107 19 7 1.6590 9.1029 -0.7483 20 6 4.0824 6.9034 -2.0131 21 7 4.7817 6.7803 -2.9020 22 6 4.0639 2.5198 -0.0063 23 6 5.5686 2.6013 -0.0137 24 6 3.4364 1.2851 0.0000 25 8 4.1777 0.1449 -0.0005 26 6 4.5312 -0.3985 -1.2740 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2138 2.3173 0.0005 31 1 1.3281 4.5110 0.0000 32 1 4.9011 4.9862 -0.0926 33 1 3.9054 4.2503 3.2915 34 1 5.9365 2.6191 1.0122 35 1 5.9771 1.7331 -0.5311 36 1 5.8807 3.5105 -0.5275 37 1 5.1177 0.3323 -1.8308 38 1 5.1199 -1.3048 -1.1315 39 1 3.6255 -0.6379 -1.8310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:48 Heat of formation + Delta-G solvation = 0.925925 kcal Electronic energy + Delta-G solvation = -25904.628268 eV Core-core repulsion = 22198.831313 eV Total energy + Delta-G solvation = -3705.796955 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49498 -39.68242 -38.96295 -37.61744 -36.53618 -36.45888 -34.77811 -33.28390 -31.80033 -29.89703 -28.74741 -28.12982 -27.68387 -26.77105 -23.86586 -22.35944 -22.06899 -20.53570 -19.04388 -18.90822 -18.36215 -17.82475 -17.51442 -16.86244 -16.67490 -16.21762 -15.85943 -15.59473 -15.24490 -14.63688 -14.51890 -14.41708 -14.32305 -14.15168 -13.85479 -13.63364 -13.37872 -13.35423 -13.26100 -13.06493 -13.00054 -12.87850 -12.72378 -12.66602 -12.62057 -12.51730 -12.20897 -11.91629 -11.74675 -11.46409 -10.85429 -10.63918 -9.67868 -9.42044 -9.04191 -7.81416 -7.08834 0.33875 0.46768 0.96342 1.39265 1.51002 1.57699 2.06418 2.10427 2.25641 2.37641 2.52844 2.65685 2.70950 2.87165 3.20584 3.46004 3.89329 3.99050 4.20005 4.29157 4.43111 4.47847 4.48606 4.55912 4.58001 4.64037 4.68919 4.73620 4.77434 4.79675 4.84263 4.91346 5.18174 5.33962 5.44964 5.48150 5.53865 5.66660 5.84366 6.12111 6.26709 6.35384 6.78766 6.92398 7.06924 7.25191 7.38281 7.76933 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.005779 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.220640 B = 4843.842458 C = 5839.763208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.331 6.331 3 C 0.040 3.960 4 C -0.156 4.156 5 C -0.158 4.158 6 C 0.227 3.773 7 N -0.660 5.660 8 C 0.380 3.620 9 C -0.372 4.372 10 H 0.102 0.898 11 C 0.051 3.949 12 N -0.709 5.709 13 Si 0.968 3.032 14 H -0.250 1.250 15 H -0.261 1.261 16 H -0.259 1.259 17 C -0.331 4.331 18 C 0.330 3.670 19 N -0.560 5.560 20 C 0.317 3.683 21 N -0.561 5.561 22 C -0.145 4.145 23 C -0.088 4.088 24 C 0.088 3.912 25 O -0.339 6.339 26 C 0.033 3.967 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.057 0.943 30 H 0.149 0.851 31 H 0.130 0.870 32 H 0.400 0.600 33 H 0.311 0.689 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.113 0.887 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.780 -14.435 4.313 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C -0.007 4.007 4 C -0.175 4.175 5 C -0.180 4.180 6 C 0.125 3.875 7 N -0.283 5.283 8 C 0.275 3.725 9 C -0.399 4.399 10 H 0.120 0.880 11 C -0.181 4.181 12 N -0.327 5.327 13 Si 0.787 3.213 14 H -0.173 1.173 15 H -0.185 1.185 16 H -0.183 1.183 17 C -0.350 4.350 18 C 0.024 3.976 19 N -0.243 5.243 20 C 0.012 3.988 21 N -0.244 5.244 22 C -0.150 4.150 23 C -0.144 4.144 24 C 0.043 3.957 25 O -0.256 6.256 26 C -0.061 4.061 27 H 0.078 0.922 28 H 0.135 0.865 29 H 0.076 0.924 30 H 0.166 0.834 31 H 0.148 0.852 32 H 0.238 0.762 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.131 0.869 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.471 -13.572 3.344 14.194 hybrid contribution -0.247 0.228 0.588 0.677 sum -2.718 -13.344 3.932 14.174 Atomic orbital electron populations 1.23246 0.77403 1.05033 1.01769 1.86060 1.22517 1.26098 1.89877 1.19141 0.91342 0.85153 1.05025 1.21023 1.00492 0.90643 1.05326 1.20806 0.92976 0.98301 1.05938 1.17158 0.91244 0.84185 0.94871 1.41344 1.08351 1.01133 1.77476 1.16686 0.85322 0.82230 0.88275 1.20410 1.12364 1.14450 0.92690 0.87963 1.26861 0.96447 0.92587 1.02196 1.69483 1.20550 1.12147 1.30515 0.85349 0.79355 0.80165 0.76410 1.17346 1.18457 1.18331 1.13064 1.17674 1.02584 1.01702 1.24855 0.90846 0.90857 0.91043 1.81016 1.16918 1.14290 1.12114 1.25366 0.91064 0.91244 0.91155 1.81120 1.17297 1.12227 1.13780 1.19415 0.96990 0.90040 1.08552 1.20389 0.89807 1.01808 1.02425 1.17523 0.86485 0.85683 1.06026 1.86004 1.70761 1.38483 1.30379 1.23103 0.99871 0.99089 0.84048 0.92242 0.86482 0.92405 0.83366 0.85220 0.76177 0.87690 0.90973 0.91030 0.92484 0.93498 0.86851 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.33 -9.51 10.28 -80.30 -0.83 -10.33 16 3 C 0.04 1.27 6.70 22.57 0.15 1.42 16 4 C -0.16 -4.77 9.03 22.33 0.20 -4.56 16 5 C -0.16 -5.49 8.50 22.41 0.19 -5.30 16 6 C 0.23 8.13 4.95 38.15 0.19 8.32 16 7 N -0.66 -24.56 3.25 -179.72 -0.58 -25.14 16 8 C 0.38 15.21 4.99 39.04 0.19 15.40 16 9 C -0.37 -14.41 7.00 23.09 0.16 -14.25 16 10 H 0.10 4.06 6.96 -2.91 -0.02 4.04 16 11 C 0.05 1.80 4.71 85.55 0.40 2.21 16 12 N -0.71 -25.18 10.78 21.98 0.24 -24.94 16 13 Si 0.97 28.33 29.58 68.60 2.03 30.36 16 14 H -0.25 -7.24 7.11 99.48 0.71 -6.53 16 15 H -0.26 -7.30 7.11 99.48 0.71 -6.59 16 16 H -0.26 -7.84 7.11 99.48 0.71 -7.13 16 17 C -0.33 -14.29 5.88 -20.07 -0.12 -14.41 16 18 C 0.33 14.97 13.88 88.34 1.23 16.20 16 19 N -0.56 -26.37 18.53 18.99 0.35 -26.02 16 20 C 0.32 14.27 14.82 88.31 1.31 15.58 16 21 N -0.56 -26.20 18.55 19.03 0.35 -25.84 16 22 C -0.15 -4.87 5.91 -19.65 -0.12 -4.99 16 23 C -0.09 -2.57 9.39 71.24 0.67 -1.90 16 24 C 0.09 2.91 5.71 22.55 0.13 3.04 16 25 O -0.34 -10.53 9.42 -79.57 -0.75 -11.28 16 26 C 0.03 0.76 10.76 113.37 1.22 1.98 16 27 H 0.06 1.03 7.66 -2.38 -0.02 1.01 16 28 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.02 7.66 -2.39 -0.02 1.01 16 30 H 0.15 3.68 6.29 -2.91 -0.02 3.66 16 31 H 0.13 4.67 6.20 -2.91 -0.02 4.65 16 32 H 0.40 14.69 6.76 -92.71 -0.63 14.06 16 33 H 0.31 10.17 8.29 -92.70 -0.77 9.40 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 1.89 6.29 -2.38 -0.01 1.87 16 36 H 0.06 1.67 6.47 -2.39 -0.02 1.66 16 37 H 0.05 1.05 7.22 -2.39 -0.02 1.03 16 38 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -52.53 346.11 8.24 -44.28 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.51 Total: 28.69 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 6.92 Total: 20.23 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: 0.36 Total: -101.95 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -1.57 Total: -21.62 kcal Atomic # 14 Polarization: 28.33 SS G_CDS: 2.03 Total: 30.36 kcal Total: -52.53 8.24 -44.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.211 kcal (2) G-P(sol) polarization free energy of solvation -52.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds