Wall clock time and date at job start Tue Mar 31 2020 10:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00222 * 2 1 4 4 O 1.42904 * 109.46810 * 75.00332 * 3 2 1 5 5 C 1.35985 * 117.00138 * 75.00323 * 4 3 2 6 6 C 1.38523 * 120.08226 * 0.02562 * 5 4 3 7 7 C 1.38269 * 120.02274 * 179.97438 * 6 5 4 8 8 C 1.38283 * 120.17886 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.91078 * 180.02562 * 8 7 6 10 10 C 1.38191 * 120.17039 * 359.78714 * 8 7 6 11 11 C 1.38766 * 119.97775 * 0.44533 * 10 8 7 12 12 N 1.39956 * 120.08957 * 179.80843 * 11 10 8 13 13 C 1.38242 * 120.00323 * 354.25407 * 12 11 10 14 14 C 1.39026 * 119.99808 * 299.78726 * 13 12 11 15 15 H 1.08001 * 119.99867 * 151.64477 * 14 13 12 16 16 C 1.40816 * 120.00306 * 331.65259 * 14 13 12 17 17 N 1.30344 * 120.00273 * 168.01939 * 16 14 13 18 18 Si 1.86810 * 119.99860 * 348.01938 * 16 14 13 19 19 H 1.48500 * 109.47027 * 89.04829 * 18 16 14 20 20 H 1.48495 * 109.46867 * 209.04889 * 18 16 14 21 21 H 1.48504 * 109.46820 * 329.04591 * 18 16 14 22 22 C 1.41172 * 120.00249 * 119.79352 * 13 12 11 23 23 C 1.43204 * 120.00300 * 175.23104 * 22 13 12 24 24 N 9.64845 * 89.75636 * 54.79567 * 2 1 3 25 25 C 1.43202 * 119.99835 * 354.94989 * 22 13 12 26 26 N 7.45110 * 100.04358 * 30.39601 * 2 1 3 27 27 H 1.08997 * 109.46960 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46713 * 299.99644 * 1 2 3 29 29 H 1.08996 * 109.47134 * 59.99558 * 1 2 3 30 30 H 1.08998 * 109.47518 * 315.00588 * 3 2 1 31 31 H 1.08997 * 109.47895 * 195.00029 * 3 2 1 32 32 H 1.08008 * 119.99033 * 359.97438 * 6 5 4 33 33 H 1.07996 * 119.90985 * 180.02562 * 7 6 5 34 34 H 1.08995 * 109.47148 * 94.98322 * 9 8 7 35 35 H 1.09003 * 109.46720 * 214.98395 * 9 8 7 36 36 H 1.08997 * 109.47182 * 334.97830 * 9 8 7 37 37 H 1.08003 * 120.01308 * 180.23259 * 10 8 7 38 38 H 0.97008 * 119.99900 * 174.24708 * 12 11 10 39 39 H 0.97006 * 119.99952 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 1.8855 1.8824 1.3015 5 6 2.7194 1.4127 2.2675 6 6 3.6375 0.4192 1.9693 7 6 4.4852 -0.0570 2.9524 8 6 4.4194 0.4554 4.2351 9 6 5.3466 -0.0677 5.3018 10 6 3.5090 1.4493 4.5401 11 6 2.6518 1.9289 3.5599 12 7 1.7262 2.9327 3.8672 13 6 1.5823 3.3642 5.1727 14 6 1.1963 2.4676 6.1626 15 1 1.5057 2.6260 7.1851 16 6 0.4020 1.3528 5.8321 17 7 0.2334 0.3930 6.6976 18 14 -0.4103 1.2496 4.1529 19 1 0.5131 0.5881 3.1963 20 1 -1.6638 0.4603 4.2572 21 1 -0.7257 2.6182 3.6707 22 6 1.8272 4.7153 5.5006 23 6 1.5801 5.1855 6.8305 24 7 1.3879 5.5622 7.8837 25 6 2.3284 5.6142 4.5049 26 7 2.7284 6.3284 3.7123 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.4942 1.9330 -0.7266 31 1 3.0648 1.2337 -0.2660 32 1 3.6913 0.0165 0.9686 33 1 5.2006 -0.8313 2.7179 34 1 6.2237 0.5759 5.3684 35 1 4.8287 -0.0766 6.2609 36 1 5.6579 -1.0809 5.0477 37 1 3.4624 1.8504 5.5418 38 1 1.1856 3.3257 3.1641 39 1 -0.3141 -0.3748 6.4700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169084313.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:58 Heat of formation + Delta-G solvation = -1.285350 kcal Electronic energy + Delta-G solvation = -26049.421363 eV Core-core repulsion = 22343.528519 eV Total energy + Delta-G solvation = -3705.892843 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.33938 -38.61190 -37.14627 -36.35480 -35.24345 -34.71282 -33.91194 -31.72816 -30.87360 -28.45109 -27.88389 -27.28386 -26.34301 -24.82299 -22.62174 -20.98081 -20.84199 -18.95731 -18.27583 -17.39641 -17.18127 -16.94053 -16.20500 -15.88971 -15.54599 -15.25120 -14.37915 -14.09876 -13.79975 -13.67594 -13.48637 -13.09855 -13.02361 -12.88536 -12.73793 -12.58583 -12.17335 -11.85371 -11.75358 -11.65542 -11.55948 -11.51054 -11.39898 -11.23736 -11.06861 -10.97990 -10.78884 -10.72679 -10.54065 -10.19310 -10.06501 -9.49785 -8.29998 -7.92701 -7.72013 -6.80073 -5.43310 1.75621 1.79902 2.17680 2.81202 2.86322 2.94854 3.31539 3.52247 3.61615 3.76254 3.86853 4.03117 4.17194 4.29740 4.35733 4.85249 4.99777 5.12003 5.18208 5.22214 5.25414 5.30115 5.45441 5.53484 5.58185 5.65266 5.79893 5.94303 6.05701 6.13352 6.22689 6.30093 6.44038 6.50172 6.65381 6.74645 6.97149 7.11750 7.20511 7.25649 7.49447 7.63829 7.79168 8.11204 8.30834 8.92130 9.11461 9.21353 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.006079 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.299647 B = 4605.200195 C = 4741.258249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.395 6.395 3 C 0.215 3.785 4 O -0.335 6.335 5 C 0.057 3.943 6 C -0.157 4.157 7 C -0.139 4.139 8 C -0.080 4.080 9 C -0.108 4.108 10 C -0.132 4.132 11 C 0.196 3.804 12 N -0.689 5.689 13 C 0.345 3.655 14 C -0.362 4.362 15 H 0.121 0.879 16 C 0.082 3.918 17 N -0.730 5.730 18 Si 0.919 3.081 19 H -0.238 1.238 20 H -0.291 1.291 21 H -0.254 1.254 22 C -0.296 4.296 23 C 0.324 3.676 24 N -0.526 5.526 25 C 0.309 3.691 26 N -0.532 5.532 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.146 0.854 38 H 0.406 0.594 39 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 -10.219 -11.658 15.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.314 6.314 3 C 0.102 3.898 4 O -0.252 6.252 5 C 0.010 3.990 6 C -0.176 4.176 7 C -0.159 4.159 8 C -0.081 4.081 9 C -0.165 4.165 10 C -0.153 4.153 11 C 0.097 3.903 12 N -0.317 5.317 13 C 0.242 3.758 14 C -0.389 4.389 15 H 0.139 0.861 16 C -0.150 4.150 17 N -0.348 5.348 18 Si 0.745 3.255 19 H -0.162 1.162 20 H -0.219 1.219 21 H -0.179 1.179 22 C -0.314 4.314 23 C 0.015 3.985 24 N -0.208 5.208 25 C 0.001 3.999 26 N -0.214 5.214 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.164 0.836 38 H 0.244 0.756 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.910 -8.801 -10.954 14.181 hybrid contribution -0.887 -0.431 -1.119 1.492 sum 1.023 -9.232 -12.073 15.233 Atomic orbital electron populations 1.22821 0.80523 1.02905 1.00480 1.88028 1.20796 1.28910 1.93701 1.24078 0.99496 0.83114 0.83119 1.86133 1.58200 1.60908 1.19915 1.18243 0.94754 0.98313 0.87683 1.20864 0.97803 0.98638 1.00296 1.20545 1.00842 1.01992 0.92537 1.19591 0.97224 0.96573 0.94712 1.20709 0.98137 1.00209 0.97427 1.20762 0.95804 0.99110 0.99667 1.17036 0.91924 0.90955 0.90397 1.42155 1.41480 1.39870 1.08237 1.16836 0.88390 0.89349 0.81274 1.20076 1.19276 1.01668 0.97872 0.86132 1.26648 0.94915 0.92895 1.00544 1.69395 1.24420 1.04834 1.36138 0.86082 0.78613 0.80637 0.80200 1.16241 1.21893 1.17871 1.12923 1.41430 0.90846 0.86231 1.24601 0.90690 0.91797 0.91389 1.81018 1.17544 1.09820 1.12406 1.25318 0.90418 0.91909 0.92207 1.81207 1.18445 1.10212 1.11520 0.89592 0.93325 0.93805 0.88246 0.88232 0.85607 0.86620 0.91581 0.91271 0.92179 0.83645 0.75646 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.89 101.05 1.10 1.41 16 2 O -0.39 -4.96 10.19 -59.04 -0.60 -5.56 16 3 C 0.22 2.48 6.39 101.05 0.65 3.13 16 4 O -0.33 -5.16 9.39 -43.51 -0.41 -5.57 16 5 C 0.06 0.95 5.47 -39.07 -0.21 0.74 16 6 C -0.16 -2.34 8.78 -39.46 -0.35 -2.69 16 7 C -0.14 -2.02 9.67 -39.55 -0.38 -2.40 16 8 C -0.08 -1.25 5.88 -104.62 -0.62 -1.86 16 9 C -0.11 -1.38 10.01 36.01 0.36 -1.02 16 10 C -0.13 -2.35 8.50 -39.40 -0.33 -2.69 16 11 C 0.20 3.59 4.50 -83.55 -0.38 3.22 16 12 N -0.69 -13.16 2.22 -8.07 -0.02 -13.18 16 13 C 0.34 7.09 4.45 -83.57 -0.37 6.71 16 14 C -0.36 -7.71 7.09 -38.32 -0.27 -7.98 16 15 H 0.12 2.78 7.49 -52.49 -0.39 2.39 16 16 C 0.08 1.69 5.33 -17.21 -0.09 1.59 16 17 N -0.73 -15.37 13.90 55.59 0.77 -14.59 16 18 Si 0.92 17.08 24.37 -169.99 -4.14 12.94 16 19 H -0.24 -4.42 5.40 56.52 0.31 -4.11 16 20 H -0.29 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.25 -4.74 6.57 56.52 0.37 -4.37 16 22 C -0.30 -6.45 5.89 -104.93 -0.62 -7.07 16 23 C 0.32 7.48 14.05 -22.51 -0.32 7.16 16 24 N -0.53 -12.72 18.53 41.80 0.77 -11.94 16 25 C 0.31 6.92 14.83 -22.36 -0.33 6.59 16 26 N -0.53 -12.39 18.56 41.98 0.78 -11.61 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.60 8.03 -51.93 -0.42 0.18 16 29 H 0.04 0.36 8.11 -51.93 -0.42 -0.06 16 30 H 0.10 0.88 8.01 -51.93 -0.42 0.47 16 31 H 0.10 0.99 6.70 -51.93 -0.35 0.64 16 32 H 0.13 1.62 5.86 -52.48 -0.31 1.32 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 36 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 37 H 0.15 2.75 6.16 -52.48 -0.32 2.42 16 38 H 0.41 7.59 7.11 -40.82 -0.29 7.30 16 39 H 0.30 5.76 8.29 -40.82 -0.34 5.42 16 LS Contribution 344.23 15.07 5.19 5.19 Total: -1.00 -26.37 344.23 -4.10 -30.47 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -4.28 Total: 9.01 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -2.16 Total: 4.85 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 2.31 Total: -51.32 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.01 Total: -11.13 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -4.14 Total: 12.94 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.37 -4.10 -30.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084313.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.185 kcal (2) G-P(sol) polarization free energy of solvation -26.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds