Wall clock time and date at job start Tue Mar 31 2020 10:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00222 * 2 1 4 4 O 1.42904 * 109.46810 * 75.00332 * 3 2 1 5 5 C 1.35985 * 117.00138 * 75.00323 * 4 3 2 6 6 C 1.38523 * 120.08226 * 0.02562 * 5 4 3 7 7 C 1.38269 * 120.02274 * 179.97438 * 6 5 4 8 8 C 1.38283 * 120.17886 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.91078 * 180.02562 * 8 7 6 10 10 C 1.38191 * 120.17039 * 359.78714 * 8 7 6 11 11 C 1.38766 * 119.97775 * 0.44533 * 10 8 7 12 12 N 1.39956 * 120.08957 * 179.80843 * 11 10 8 13 13 C 1.38242 * 120.00323 * 354.25407 * 12 11 10 14 14 C 1.39026 * 119.99808 * 299.78726 * 13 12 11 15 15 H 1.08001 * 119.99867 * 151.64477 * 14 13 12 16 16 C 1.40816 * 120.00306 * 331.65259 * 14 13 12 17 17 N 1.30344 * 120.00273 * 168.01939 * 16 14 13 18 18 Si 1.86810 * 119.99860 * 348.01938 * 16 14 13 19 19 H 1.48500 * 109.47027 * 89.04829 * 18 16 14 20 20 H 1.48495 * 109.46867 * 209.04889 * 18 16 14 21 21 H 1.48504 * 109.46820 * 329.04591 * 18 16 14 22 22 C 1.41172 * 120.00249 * 119.79352 * 13 12 11 23 23 C 1.43204 * 120.00300 * 175.23104 * 22 13 12 24 24 N 9.64845 * 89.75636 * 54.79567 * 2 1 3 25 25 C 1.43202 * 119.99835 * 354.94989 * 22 13 12 26 26 N 7.45110 * 100.04358 * 30.39601 * 2 1 3 27 27 H 1.08997 * 109.46960 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46713 * 299.99644 * 1 2 3 29 29 H 1.08996 * 109.47134 * 59.99558 * 1 2 3 30 30 H 1.08998 * 109.47518 * 315.00588 * 3 2 1 31 31 H 1.08997 * 109.47895 * 195.00029 * 3 2 1 32 32 H 1.08008 * 119.99033 * 359.97438 * 6 5 4 33 33 H 1.07996 * 119.90985 * 180.02562 * 7 6 5 34 34 H 1.08995 * 109.47148 * 94.98322 * 9 8 7 35 35 H 1.09003 * 109.46720 * 214.98395 * 9 8 7 36 36 H 1.08997 * 109.47182 * 334.97830 * 9 8 7 37 37 H 1.08003 * 120.01308 * 180.23259 * 10 8 7 38 38 H 0.97008 * 119.99900 * 174.24708 * 12 11 10 39 39 H 0.97006 * 119.99952 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 1.8855 1.8824 1.3015 5 6 2.7194 1.4127 2.2675 6 6 3.6375 0.4192 1.9693 7 6 4.4852 -0.0570 2.9524 8 6 4.4194 0.4554 4.2351 9 6 5.3466 -0.0677 5.3018 10 6 3.5090 1.4493 4.5401 11 6 2.6518 1.9289 3.5599 12 7 1.7262 2.9327 3.8672 13 6 1.5823 3.3642 5.1727 14 6 1.1963 2.4676 6.1626 15 1 1.5057 2.6260 7.1851 16 6 0.4020 1.3528 5.8321 17 7 0.2334 0.3930 6.6976 18 14 -0.4103 1.2496 4.1529 19 1 0.5131 0.5881 3.1963 20 1 -1.6638 0.4603 4.2572 21 1 -0.7257 2.6182 3.6707 22 6 1.8272 4.7153 5.5006 23 6 1.5801 5.1855 6.8305 24 7 1.3879 5.5622 7.8837 25 6 2.3284 5.6142 4.5049 26 7 2.7284 6.3284 3.7123 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.4942 1.9330 -0.7266 31 1 3.0648 1.2337 -0.2660 32 1 3.6913 0.0165 0.9686 33 1 5.2006 -0.8313 2.7179 34 1 6.2237 0.5759 5.3684 35 1 4.8287 -0.0766 6.2609 36 1 5.6579 -1.0809 5.0477 37 1 3.4624 1.8504 5.5418 38 1 1.1856 3.3257 3.1641 39 1 -0.3141 -0.3748 6.4700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169084313.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:57 Heat of formation + Delta-G solvation = -15.339196 kcal Electronic energy + Delta-G solvation = -26050.030783 eV Core-core repulsion = 22343.528519 eV Total energy + Delta-G solvation = -3706.502264 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.53455 -39.80060 -38.53829 -37.38630 -36.98415 -36.55158 -35.51597 -33.08806 -32.18888 -29.82857 -29.07437 -28.69040 -27.39345 -25.76267 -24.02116 -22.38376 -22.17164 -20.62677 -19.43823 -19.04838 -18.40277 -17.99578 -17.67572 -17.15692 -16.83087 -16.29582 -15.53529 -15.25839 -15.07641 -14.84770 -14.80232 -14.59148 -14.46175 -14.34480 -14.18267 -14.07406 -13.59657 -13.52941 -13.42781 -13.18592 -12.86604 -12.85126 -12.72824 -12.67125 -12.51236 -12.29131 -12.10906 -11.95060 -11.77672 -11.57195 -11.10185 -10.93110 -9.89182 -9.36120 -9.18667 -8.17910 -7.18741 0.28748 0.56755 0.76190 1.27048 1.37564 1.45668 1.97168 1.99449 2.17808 2.19738 2.35191 2.51098 2.70567 2.77047 3.00998 3.33683 3.71300 3.95990 4.08249 4.14332 4.21604 4.37969 4.43183 4.45855 4.53223 4.56027 4.63736 4.74349 4.81017 4.89216 4.96425 5.05204 5.18063 5.33064 5.41385 5.50982 5.59814 5.79429 5.82501 5.87989 6.04198 6.12753 6.36521 6.70700 6.75976 7.12409 7.28271 7.62305 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.006079 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.299647 B = 4605.200195 C = 4741.258249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.408 6.408 3 C 0.205 3.795 4 O -0.350 6.350 5 C 0.054 3.946 6 C -0.157 4.157 7 C -0.131 4.131 8 C -0.090 4.090 9 C -0.106 4.106 10 C -0.150 4.150 11 C 0.168 3.832 12 N -0.689 5.689 13 C 0.360 3.640 14 C -0.363 4.363 15 H 0.097 0.903 16 C 0.064 3.936 17 N -0.748 5.748 18 Si 0.960 3.040 19 H -0.235 1.235 20 H -0.286 1.286 21 H -0.257 1.257 22 C -0.306 4.306 23 C 0.329 3.671 24 N -0.551 5.551 25 C 0.317 3.683 26 N -0.548 5.548 27 H 0.098 0.902 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.127 0.873 31 H 0.117 0.883 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.407 0.593 39 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.110 -11.983 -13.960 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.328 6.328 3 C 0.093 3.907 4 O -0.267 6.267 5 C 0.007 3.993 6 C -0.176 4.176 7 C -0.150 4.150 8 C -0.090 4.090 9 C -0.162 4.162 10 C -0.172 4.172 11 C 0.070 3.930 12 N -0.319 5.319 13 C 0.256 3.744 14 C -0.391 4.391 15 H 0.115 0.885 16 C -0.166 4.166 17 N -0.366 5.366 18 Si 0.783 3.217 19 H -0.159 1.159 20 H -0.214 1.214 21 H -0.181 1.181 22 C -0.324 4.324 23 C 0.021 3.979 24 N -0.234 5.234 25 C 0.011 3.989 26 N -0.231 5.231 27 H 0.116 0.884 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.135 0.865 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.142 0.858 38 H 0.245 0.755 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.358 -10.587 -13.265 17.134 hybrid contribution -0.983 -0.007 -0.439 1.076 sum 1.375 -10.593 -13.704 17.375 Atomic orbital electron populations 1.22968 0.79791 1.03862 1.00696 1.88001 1.21726 1.29423 1.93604 1.24536 1.01036 0.83344 0.81812 1.86131 1.58038 1.61478 1.21067 1.18384 0.95109 0.98316 0.87451 1.21196 0.97001 0.97853 1.01539 1.20946 1.00624 1.01781 0.91671 1.19922 0.97028 0.95937 0.96155 1.20740 0.97760 1.01668 0.96072 1.20762 0.97150 1.00396 0.98882 1.17233 0.92509 0.91633 0.91587 1.42040 1.42086 1.40510 1.07269 1.16640 0.87162 0.88543 0.82084 1.19979 1.19676 1.02470 0.96941 0.88543 1.27078 0.94815 0.92339 1.02370 1.69380 1.24785 1.05356 1.37107 0.85489 0.78064 0.80478 0.77664 1.15937 1.21387 1.18150 1.12977 1.42401 0.91406 0.85658 1.24816 0.90227 0.91269 0.91561 1.80999 1.18766 1.10554 1.13065 1.25306 0.90045 0.91582 0.91976 1.81196 1.19268 1.10591 1.11996 0.88398 0.95303 0.91366 0.85555 0.86544 0.83276 0.83387 0.90549 0.92391 0.89805 0.85765 0.75520 0.87320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.89 113.37 1.23 1.66 16 2 O -0.41 -9.02 10.19 -126.21 -1.29 -10.31 16 3 C 0.21 4.11 6.39 113.37 0.72 4.84 16 4 O -0.35 -10.09 9.39 -70.62 -0.66 -10.75 16 5 C 0.05 1.72 5.47 22.60 0.12 1.85 16 6 C -0.16 -4.22 8.78 22.35 0.20 -4.03 16 7 C -0.13 -3.37 9.67 22.29 0.22 -3.16 16 8 C -0.09 -2.65 5.88 -19.86 -0.12 -2.77 16 9 C -0.11 -2.51 10.01 71.24 0.71 -1.80 16 10 C -0.15 -5.35 8.50 22.38 0.19 -5.16 16 11 C 0.17 6.06 4.50 38.23 0.17 6.23 16 12 N -0.69 -26.28 2.22 -179.44 -0.40 -26.68 16 13 C 0.36 15.03 4.45 39.04 0.17 15.20 16 14 C -0.36 -15.85 7.09 23.09 0.16 -15.69 16 15 H 0.10 4.65 7.49 -2.91 -0.02 4.63 16 16 C 0.06 2.66 5.33 85.54 0.46 3.12 16 17 N -0.75 -31.43 13.90 21.97 0.31 -31.13 16 18 Si 0.96 34.52 24.37 68.60 1.67 36.19 16 19 H -0.24 -8.37 5.40 99.48 0.54 -7.83 16 20 H -0.29 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.26 -9.30 6.57 99.48 0.65 -8.65 16 22 C -0.31 -13.53 5.89 -20.06 -0.12 -13.65 16 23 C 0.33 15.50 14.05 88.34 1.24 16.74 16 24 N -0.55 -27.18 18.53 18.99 0.35 -26.82 16 25 C 0.32 14.30 14.83 88.29 1.31 15.61 16 26 N -0.55 -25.44 18.56 19.05 0.35 -25.08 16 27 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.03 0.65 8.03 -2.39 -0.02 0.63 16 29 H 0.07 0.92 8.11 -2.39 -0.02 0.90 16 30 H 0.13 1.81 8.01 -2.39 -0.02 1.79 16 31 H 0.12 1.90 6.70 -2.39 -0.02 1.88 16 32 H 0.15 3.26 5.86 -2.91 -0.02 3.25 16 33 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.49 8.12 -2.39 -0.02 1.48 16 36 H 0.08 1.57 8.05 -2.39 -0.02 1.55 16 37 H 0.12 4.87 6.16 -2.91 -0.02 4.85 16 38 H 0.41 15.10 7.11 -92.70 -0.66 14.44 16 39 H 0.31 11.74 8.29 -92.70 -0.77 10.98 16 Total: -1.00 -56.25 344.23 7.25 -49.00 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.24 Total: 26.59 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 6.68 Total: 18.99 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: 0.61 Total: -109.72 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -1.95 Total: -21.06 kcal Atomic # 14 Polarization: 34.52 SS G_CDS: 1.67 Total: 36.19 kcal Total: -56.25 7.25 -49.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084313.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.662 kcal (2) G-P(sol) polarization free energy of solvation -56.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds