Wall clock time and date at job start Tue Mar 31 2020 10:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32177 * 119.14052 * 2 1 4 4 C 1.32370 * 120.60275 * 180.02562 * 3 2 1 5 5 C 1.47466 * 120.51305 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00110 * 179.97438 * 5 4 3 7 7 N 1.34779 * 119.99461 * 359.97438 * 5 4 3 8 8 C 1.39834 * 119.99483 * 174.89329 * 7 5 4 9 9 C 1.39318 * 119.95349 * 325.53489 * 8 7 5 10 10 C 1.38481 * 120.42743 * 179.72247 * 9 8 7 11 11 C 1.37695 * 120.32333 * 0.55460 * 10 9 8 12 12 C 1.40749 * 119.88752 * 359.72298 * 11 10 9 13 13 C 1.41410 * 120.20467 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00579 * 25.12707 * 13 12 11 15 15 C 1.39936 * 119.99702 * 205.13714 * 13 12 11 16 16 N 1.30827 * 120.00180 * 16.78982 * 15 13 12 17 17 Si 1.86800 * 119.99957 * 196.79729 * 15 13 12 18 18 H 1.48502 * 109.46704 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47243 * 119.99605 * 17 15 13 20 20 H 1.48494 * 109.46894 * 239.99748 * 17 15 13 21 21 C 1.38273 * 119.94988 * 145.81253 * 8 7 5 22 22 C 1.46698 * 118.98113 * 359.97438 * 4 3 2 23 23 O 1.21848 * 120.78757 * 179.97438 * 22 4 3 24 24 N 1.35158 * 118.42585 * 359.76116 * 22 4 3 25 25 H 0.96999 * 120.36506 * 180.25632 * 24 22 4 26 26 C 1.34902 * 119.26364 * 0.50172 * 24 22 4 27 27 C 1.50698 * 119.49776 * 179.73264 * 26 24 22 28 28 H 1.09001 * 109.46938 * 269.97699 * 1 2 3 29 29 H 1.09004 * 109.46826 * 29.97561 * 1 2 3 30 30 H 1.08993 * 109.47171 * 149.97569 * 1 2 3 31 31 H 0.96996 * 120.00378 * 354.89342 * 7 5 4 32 32 H 1.07999 * 119.78413 * 359.97438 * 9 8 7 33 33 H 1.07993 * 119.84162 * 180.25779 * 10 9 8 34 34 H 1.07995 * 120.05560 * 179.74413 * 11 10 9 35 35 H 0.97000 * 120.00185 * 180.02562 * 16 15 13 36 36 H 1.08003 * 120.16118 * 359.97438 * 21 8 7 37 37 H 1.08997 * 109.47205 * 269.72843 * 27 26 24 38 38 H 1.09003 * 109.47080 * 149.73185 * 27 26 24 39 39 H 1.09002 * 109.47184 * 29.73739 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1545 0.0000 4 6 3.4739 1.1882 -0.0005 5 6 4.1900 2.4774 -0.0011 6 8 5.4059 2.4975 -0.0011 7 7 3.4968 3.6332 -0.0016 8 6 4.1716 4.8532 0.1057 9 6 5.3235 4.9449 0.8839 10 6 6.0028 6.1467 0.9924 11 6 5.5402 7.2680 0.3407 12 6 4.3746 7.1920 -0.4445 13 6 3.8939 8.3393 -1.1171 14 1 4.5739 9.1364 -1.3790 15 6 2.5369 8.4419 -1.4431 16 7 1.6629 7.6640 -0.8579 17 14 1.9735 9.6894 -2.7142 18 1 3.1481 10.4417 -3.2239 19 1 1.3104 8.9839 -3.8402 20 1 1.0142 10.6347 -2.0887 21 6 3.6915 5.9682 -0.5563 22 6 4.2172 -0.0765 -0.0005 23 8 5.4357 -0.0838 -0.0014 24 7 3.5185 -1.2334 0.0050 25 1 3.9814 -2.0858 0.0089 26 6 2.1702 -1.1895 -0.0001 27 6 1.3859 -2.4763 -0.0001 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8897 -0.5142 31 1 2.5298 3.6188 -0.0764 32 1 5.6913 4.0720 1.4027 33 1 6.8971 6.2061 1.5949 34 1 6.0711 8.2041 0.4317 35 1 0.7223 7.7349 -1.0842 36 1 2.7964 5.8993 -1.1566 37 1 1.1964 -2.7863 -1.0278 38 1 0.4370 -2.3234 0.5141 39 1 1.9568 -3.2499 0.5134 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193967197.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:01 Heat of formation + Delta-G solvation = -7.896890 kcal Electronic energy + Delta-G solvation = -24867.735131 eV Core-core repulsion = 21161.555590 eV Total energy + Delta-G solvation = -3706.179541 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90979 -39.38645 -38.08733 -37.07019 -35.58815 -34.14848 -33.44926 -33.07014 -29.73465 -29.41596 -28.33475 -26.79423 -25.16847 -24.86551 -23.48988 -21.39422 -21.01164 -19.80703 -18.79109 -18.48577 -17.26798 -16.91159 -16.41179 -16.07862 -15.42964 -14.87682 -14.69238 -14.38229 -14.35643 -14.12639 -14.00207 -13.59279 -13.47685 -13.23444 -12.95988 -12.70603 -12.27720 -12.23727 -12.00003 -11.63855 -11.48249 -11.37231 -11.17783 -11.06430 -10.65912 -10.58873 -10.07804 -9.77624 -9.64733 -9.33925 -9.12643 -8.84961 -8.20449 -7.30201 -6.92403 -6.61443 -4.29703 -0.03856 1.49034 2.18599 2.58253 2.87877 3.11255 3.12537 3.17777 3.29634 3.47513 3.70480 3.84320 3.99190 4.01903 4.15620 4.39698 4.71950 4.75327 4.93680 5.02100 5.14750 5.25838 5.36208 5.62786 5.75466 5.82783 6.09154 6.15203 6.36185 6.72859 6.77955 6.98581 7.12398 7.14326 7.30265 7.36219 7.59489 7.68779 7.79232 8.01431 8.10898 8.24412 8.41107 8.63229 8.83456 8.96196 9.03639 10.26097 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.003469 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.296597 B = 8068.511119 C = 9408.922876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.028 4.028 3 N -0.353 5.353 4 C 0.020 3.980 5 C 0.569 3.431 6 O -0.492 6.492 7 N -0.643 5.643 8 C 0.146 3.854 9 C -0.225 4.225 10 C -0.085 4.085 11 C -0.227 4.227 12 C 0.120 3.880 13 C -0.463 4.463 14 H 0.078 0.922 15 C 0.076 3.924 16 N -0.798 5.798 17 Si 0.906 3.094 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.276 1.276 21 C -0.177 4.177 22 C 0.496 3.504 23 O -0.481 6.481 24 N -0.588 5.588 25 H 0.420 0.580 26 C 0.147 3.853 27 C -0.130 4.130 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.410 0.590 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.278 0.722 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.736 -20.100 0.855 21.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.154 4.154 3 N -0.070 5.070 4 C -0.149 4.149 5 C 0.353 3.647 6 O -0.364 6.364 7 N -0.288 5.288 8 C 0.054 3.946 9 C -0.246 4.246 10 C -0.104 4.104 11 C -0.247 4.247 12 C 0.117 3.883 13 C -0.493 4.493 14 H 0.096 0.904 15 C -0.140 4.140 16 N -0.424 5.424 17 Si 0.731 3.269 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.199 4.199 22 C 0.287 3.713 23 O -0.351 6.351 24 N -0.224 5.224 25 H 0.260 0.740 26 C 0.031 3.969 27 C -0.187 4.187 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.246 0.754 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.141 0.859 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.890 -19.365 0.886 20.929 hybrid contribution -0.316 -0.720 -0.554 0.962 sum -8.206 -20.085 0.331 21.699 Atomic orbital electron populations 1.20560 0.86957 1.03795 1.03116 1.20155 0.97924 0.85593 1.11679 1.67567 1.08473 1.29526 1.01480 1.24095 0.88772 0.94099 1.07948 1.17063 0.86723 0.82025 0.78884 1.90900 1.12128 1.86101 1.47239 1.43208 1.10777 1.04102 1.70684 1.17599 0.94780 0.83559 0.98635 1.20331 0.99429 0.97791 1.07099 1.20410 0.97911 0.92940 0.99167 1.21045 1.01951 0.96946 1.04781 1.17360 0.90129 0.91957 0.88885 1.19552 0.93288 1.03410 1.33046 0.90355 1.25870 0.96747 0.96276 0.95151 1.69825 1.03048 1.34995 1.34574 0.86296 0.79259 0.80552 0.80791 1.18473 1.19835 1.20108 1.21077 1.04030 0.91012 1.03778 1.19093 0.88448 0.83924 0.79792 1.91064 1.11376 1.85199 1.47494 1.43720 1.06350 1.11907 1.60375 0.74020 1.21503 0.83539 0.98913 0.92914 1.21226 1.00932 0.91797 1.04790 0.90681 0.89910 0.90773 0.75351 0.88045 0.88984 0.88842 0.91119 0.85860 0.88495 0.87944 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 9.25 36.01 0.33 -0.21 16 2 C -0.03 -0.27 6.70 -83.18 -0.56 -0.83 16 3 N -0.35 -4.97 9.58 -4.85 -0.05 -5.02 16 4 C 0.02 0.34 6.96 -80.46 -0.56 -0.22 16 5 C 0.57 12.12 7.53 -12.50 -0.09 12.03 16 6 O -0.49 -12.26 13.25 -15.21 -0.20 -12.46 16 7 N -0.64 -13.77 5.32 -10.87 -0.06 -13.83 16 8 C 0.15 3.65 6.24 -83.79 -0.52 3.13 16 9 C -0.23 -5.70 8.66 -39.09 -0.34 -6.04 16 10 C -0.09 -2.09 10.02 -39.69 -0.40 -2.49 16 11 C -0.23 -5.84 9.79 -38.83 -0.38 -6.22 16 12 C 0.12 3.28 5.57 -106.85 -0.59 2.68 16 13 C -0.46 -12.46 9.06 -37.74 -0.34 -12.80 16 14 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 15 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 16 N -0.80 -20.44 10.94 55.55 0.61 -19.83 16 17 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 18 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 C -0.18 -4.71 8.60 -38.68 -0.33 -5.04 16 22 C 0.50 7.75 7.93 -12.67 -0.10 7.65 16 23 O -0.48 -9.45 16.40 -15.42 -0.25 -9.70 16 24 N -0.59 -5.58 5.29 -9.45 -0.05 -5.63 16 25 H 0.42 2.62 8.81 -40.82 -0.36 2.26 16 26 C 0.15 1.09 6.78 -81.98 -0.56 0.53 16 27 C -0.13 -0.30 9.18 36.00 0.33 0.03 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.25 6.53 -51.93 -0.34 -0.09 16 31 H 0.41 7.85 8.19 -40.82 -0.33 7.52 16 32 H 0.10 2.56 6.47 -52.49 -0.34 2.22 16 33 H 0.09 1.99 8.06 -52.49 -0.42 1.56 16 34 H 0.09 2.24 8.06 -52.49 -0.42 1.81 16 35 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 36 H 0.12 3.30 6.17 -52.48 -0.32 2.98 16 37 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.10 0.12 6.54 -51.93 -0.34 -0.22 16 39 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 LS Contribution 336.70 15.07 5.07 5.07 Total: -1.00 -35.41 336.70 -8.28 -43.69 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -4.12 Total: 9.89 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -4.20 Total: -5.97 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.45 Total: -44.31 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.45 Total: -22.16 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.41 -8.28 -43.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193967197.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.792 kcal (2) G-P(sol) polarization free energy of solvation -35.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds