Wall clock time and date at job start Tue Mar 31 2020 10:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32177 * 119.14052 * 2 1 4 4 C 1.32370 * 120.60275 * 180.02562 * 3 2 1 5 5 C 1.47466 * 120.51305 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00110 * 179.97438 * 5 4 3 7 7 N 1.34779 * 119.99461 * 359.97438 * 5 4 3 8 8 C 1.39834 * 119.99483 * 174.89329 * 7 5 4 9 9 C 1.39318 * 119.95349 * 325.53489 * 8 7 5 10 10 C 1.38481 * 120.42743 * 179.72247 * 9 8 7 11 11 C 1.37695 * 120.32333 * 0.55460 * 10 9 8 12 12 C 1.40749 * 119.88752 * 359.72298 * 11 10 9 13 13 C 1.41410 * 120.20467 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00579 * 25.12707 * 13 12 11 15 15 C 1.39936 * 119.99702 * 205.13714 * 13 12 11 16 16 N 1.30827 * 120.00180 * 16.78982 * 15 13 12 17 17 Si 1.86800 * 119.99957 * 196.79729 * 15 13 12 18 18 H 1.48502 * 109.46704 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47243 * 119.99605 * 17 15 13 20 20 H 1.48494 * 109.46894 * 239.99748 * 17 15 13 21 21 C 1.38273 * 119.94988 * 145.81253 * 8 7 5 22 22 C 1.46698 * 118.98113 * 359.97438 * 4 3 2 23 23 O 1.21848 * 120.78757 * 179.97438 * 22 4 3 24 24 N 1.35158 * 118.42585 * 359.76116 * 22 4 3 25 25 H 0.96999 * 120.36506 * 180.25632 * 24 22 4 26 26 C 1.34902 * 119.26364 * 0.50172 * 24 22 4 27 27 C 1.50698 * 119.49776 * 179.73264 * 26 24 22 28 28 H 1.09001 * 109.46938 * 269.97699 * 1 2 3 29 29 H 1.09004 * 109.46826 * 29.97561 * 1 2 3 30 30 H 1.08993 * 109.47171 * 149.97569 * 1 2 3 31 31 H 0.96996 * 120.00378 * 354.89342 * 7 5 4 32 32 H 1.07999 * 119.78413 * 359.97438 * 9 8 7 33 33 H 1.07993 * 119.84162 * 180.25779 * 10 9 8 34 34 H 1.07995 * 120.05560 * 179.74413 * 11 10 9 35 35 H 0.97000 * 120.00185 * 180.02562 * 16 15 13 36 36 H 1.08003 * 120.16118 * 359.97438 * 21 8 7 37 37 H 1.08997 * 109.47205 * 269.72843 * 27 26 24 38 38 H 1.09003 * 109.47080 * 149.73185 * 27 26 24 39 39 H 1.09002 * 109.47184 * 29.73739 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1545 0.0000 4 6 3.4739 1.1882 -0.0005 5 6 4.1900 2.4774 -0.0011 6 8 5.4059 2.4975 -0.0011 7 7 3.4968 3.6332 -0.0016 8 6 4.1716 4.8532 0.1057 9 6 5.3235 4.9449 0.8839 10 6 6.0028 6.1467 0.9924 11 6 5.5402 7.2680 0.3407 12 6 4.3746 7.1920 -0.4445 13 6 3.8939 8.3393 -1.1171 14 1 4.5739 9.1364 -1.3790 15 6 2.5369 8.4419 -1.4431 16 7 1.6629 7.6640 -0.8579 17 14 1.9735 9.6894 -2.7142 18 1 3.1481 10.4417 -3.2239 19 1 1.3104 8.9839 -3.8402 20 1 1.0142 10.6347 -2.0887 21 6 3.6915 5.9682 -0.5563 22 6 4.2172 -0.0765 -0.0005 23 8 5.4357 -0.0838 -0.0014 24 7 3.5185 -1.2334 0.0050 25 1 3.9814 -2.0858 0.0089 26 6 2.1702 -1.1895 -0.0001 27 6 1.3859 -2.4763 -0.0001 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8897 -0.5142 31 1 2.5298 3.6188 -0.0764 32 1 5.6913 4.0720 1.4027 33 1 6.8971 6.2061 1.5949 34 1 6.0711 8.2041 0.4317 35 1 0.7223 7.7349 -1.0842 36 1 2.7964 5.8993 -1.1566 37 1 1.1964 -2.7863 -1.0278 38 1 0.4370 -2.3234 0.5141 39 1 1.9568 -3.2499 0.5134 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193967197.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:00 Heat of formation + Delta-G solvation = -33.665780 kcal Electronic energy + Delta-G solvation = -24868.852554 eV Core-core repulsion = 21161.555590 eV Total energy + Delta-G solvation = -3707.296964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.93903 -41.05191 -39.25891 -38.88976 -36.64260 -35.98216 -35.08103 -34.13793 -31.49832 -30.71794 -29.64934 -27.86173 -27.15856 -25.63404 -24.73453 -23.14675 -22.67012 -21.46785 -19.97067 -19.62190 -19.13939 -18.25624 -17.52828 -17.37877 -16.98613 -16.67662 -16.49718 -15.94122 -15.59992 -15.04520 -14.99862 -14.89373 -14.56178 -14.20017 -14.11584 -13.92616 -13.90143 -13.49658 -13.09441 -12.83364 -12.79207 -12.65470 -12.60132 -12.43889 -12.39458 -12.31395 -11.87001 -11.57883 -11.32353 -11.11154 -10.85007 -10.50515 -9.34206 -9.18737 -8.83355 -8.53290 -6.34413 -1.03274 0.46805 0.81520 1.03526 1.20493 1.41714 1.49288 1.56938 1.65478 2.15522 2.24509 2.49679 2.77604 2.89100 2.97441 3.38706 3.69713 3.72383 3.86774 4.43232 4.57113 4.63970 4.69073 4.70474 4.84037 4.87095 4.91291 5.06221 5.10465 5.14578 5.16984 5.20198 5.24232 5.36322 5.49674 5.77094 5.83717 6.01469 6.08574 6.27707 6.37954 6.52419 6.60807 6.71474 6.94260 6.97409 7.20194 8.36796 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.003469 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.296597 B = 8068.511119 C = 9408.922876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.050 4.050 3 N -0.345 5.345 4 C -0.066 4.066 5 C 0.571 3.429 6 O -0.544 6.544 7 N -0.644 5.644 8 C 0.150 3.850 9 C -0.244 4.244 10 C -0.082 4.082 11 C -0.246 4.246 12 C 0.094 3.906 13 C -0.496 4.496 14 H 0.078 0.922 15 C 0.036 3.964 16 N -0.821 5.821 17 Si 0.985 3.015 18 H -0.261 1.261 19 H -0.264 1.264 20 H -0.263 1.263 21 C -0.199 4.199 22 C 0.495 3.505 23 O -0.538 6.538 24 N -0.560 5.560 25 H 0.441 0.559 26 C 0.208 3.792 27 C -0.134 4.134 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.418 0.582 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.289 0.711 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.180 -23.232 0.282 26.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.182 4.182 3 N -0.063 5.063 4 C -0.226 4.226 5 C 0.358 3.642 6 O -0.420 6.420 7 N -0.289 5.289 8 C 0.057 3.943 9 C -0.265 4.265 10 C -0.101 4.101 11 C -0.266 4.266 12 C 0.091 3.909 13 C -0.525 4.525 14 H 0.096 0.904 15 C -0.179 4.179 16 N -0.446 5.446 17 Si 0.805 3.195 18 H -0.184 1.184 19 H -0.189 1.189 20 H -0.188 1.188 21 C -0.221 4.221 22 C 0.289 3.711 23 O -0.415 6.415 24 N -0.195 5.195 25 H 0.285 0.715 26 C 0.088 3.912 27 C -0.190 4.190 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.255 0.745 32 H 0.114 0.886 33 H 0.139 0.861 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.132 0.868 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.314 -22.499 0.331 25.185 hybrid contribution 0.427 -0.163 -0.339 0.569 sum -10.887 -22.662 -0.008 25.142 Atomic orbital electron populations 1.20753 0.83745 1.05254 1.04512 1.21058 0.99916 0.85154 1.12038 1.67423 1.07380 1.32341 0.99124 1.22929 0.89601 0.92363 1.17704 1.17661 0.86438 0.83239 0.76835 1.90833 1.14310 1.87128 1.49683 1.43145 1.11009 1.03479 1.71217 1.17713 0.94583 0.84628 0.97403 1.20455 1.00146 0.97992 1.07900 1.20712 0.98465 0.92207 0.98674 1.21231 1.02139 0.97890 1.05352 1.17774 0.91023 0.92649 0.89482 1.19813 0.94564 1.03599 1.34522 0.90364 1.26760 0.96134 0.98393 0.96603 1.69865 1.03847 1.35880 1.35042 0.85128 0.78740 0.77828 0.77790 1.18440 1.18878 1.18809 1.21004 1.04396 0.91571 1.05090 1.18881 0.87764 0.84955 0.79489 1.91020 1.13518 1.86092 1.50899 1.43656 1.07381 1.11330 1.57148 0.71524 1.22596 0.82482 1.01053 0.85054 1.21670 1.01339 0.88653 1.07377 0.89278 0.91390 0.86494 0.74458 0.88625 0.86134 0.87595 0.89985 0.86766 0.85231 0.85177 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 9.25 71.24 0.66 -0.03 16 2 C -0.05 -0.83 6.70 42.03 0.28 -0.55 16 3 N -0.34 -9.72 9.58 -169.25 -1.62 -11.34 16 4 C -0.07 -2.37 6.96 43.71 0.30 -2.07 16 5 C 0.57 26.47 7.53 86.67 0.65 27.13 16 6 O -0.54 -29.66 13.25 15.52 0.21 -29.45 16 7 N -0.64 -29.83 5.32 -306.55 -1.63 -31.46 16 8 C 0.15 8.02 6.24 38.13 0.24 8.25 16 9 C -0.24 -13.14 8.66 22.59 0.20 -12.94 16 10 C -0.08 -4.19 10.02 22.20 0.22 -3.97 16 11 C -0.25 -13.22 9.79 22.76 0.22 -13.00 16 12 C 0.09 5.39 5.57 -21.31 -0.12 5.27 16 13 C -0.50 -27.60 9.06 23.46 0.21 -27.39 16 14 H 0.08 4.20 7.90 -2.91 -0.02 4.18 16 15 C 0.04 1.85 5.16 85.25 0.44 2.29 16 16 N -0.82 -42.84 10.94 21.82 0.24 -42.60 16 17 Si 0.98 38.63 29.59 68.60 2.03 40.66 16 18 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 21 C -0.20 -11.20 8.60 22.85 0.20 -11.01 16 22 C 0.49 15.91 7.93 86.39 0.69 16.59 16 23 O -0.54 -22.59 16.40 14.76 0.24 -22.35 16 24 N -0.56 -9.13 5.29 -301.74 -1.60 -10.73 16 25 H 0.44 3.90 8.81 -92.71 -0.82 3.08 16 26 C 0.21 2.09 6.78 41.61 0.28 2.37 16 27 C -0.13 0.43 9.18 71.24 0.65 1.08 16 28 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.12 -0.05 6.53 -2.39 -0.02 -0.06 16 31 H 0.42 17.32 8.19 -92.71 -0.76 16.56 16 32 H 0.10 5.21 6.47 -2.91 -0.02 5.20 16 33 H 0.12 5.32 8.06 -2.91 -0.02 5.29 16 34 H 0.11 5.25 8.06 -2.91 -0.02 5.23 16 35 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 36 H 0.11 6.50 6.17 -2.91 -0.02 6.48 16 37 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H 0.13 -0.85 6.54 -2.39 -0.02 -0.86 16 39 H 0.11 -0.70 8.14 -2.39 -0.02 -0.72 16 Total: -1.00 -88.03 336.70 2.56 -85.48 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -0.44 Total: 29.76 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.13 Total: -7.96 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -4.61 Total: -96.13 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: 0.45 Total: -51.80 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -88.03 2.56 -85.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193967197.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.812 kcal (2) G-P(sol) polarization free energy of solvation -88.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds