Wall clock time and date at job start Tue Mar 31 2020 10:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32019 * 120.51123 * 2 1 4 4 C 1.32458 * 120.92557 * 179.97438 * 3 2 1 5 5 O 1.35296 * 119.01065 * 179.97438 * 4 3 2 6 6 N 1.32483 * 121.97066 * 0.25474 * 4 3 2 7 7 C 1.31994 * 120.92371 * 359.47915 * 6 4 3 8 8 C 1.40100 * 120.50839 * 179.97438 * 2 1 3 9 9 C 1.47525 * 120.89098 * 359.97438 * 8 2 1 10 10 O 1.21619 * 119.99920 * 51.52104 * 9 8 2 11 11 N 1.34774 * 120.00204 * 231.51582 * 9 8 2 12 12 C 1.36914 * 119.99854 * 5.15597 * 11 9 8 13 13 H 1.07996 * 119.99945 * 319.69372 * 12 11 9 14 14 C 1.39019 * 119.99656 * 139.69465 * 12 11 9 15 15 N 1.31382 * 119.99785 * 159.12153 * 14 12 11 16 16 Si 1.86799 * 120.00233 * 339.11576 * 14 12 11 17 17 H 1.48500 * 109.47231 * 95.02274 * 16 14 12 18 18 H 1.48499 * 109.47515 * 215.02282 * 16 14 12 19 19 H 1.48506 * 109.47219 * 335.02198 * 16 14 12 20 20 C 1.46501 * 120.00127 * 185.15894 * 11 9 8 21 21 C 1.50688 * 109.47432 * 89.99850 * 20 11 9 22 22 C 1.38237 * 120.00480 * 269.72551 * 21 20 11 23 23 C 1.38227 * 120.00411 * 179.76210 * 22 21 20 24 24 C 1.38235 * 120.00033 * 0.49353 * 23 22 21 25 25 C 1.38237 * 120.00036 * 359.78229 * 24 23 22 26 26 C 1.38239 * 119.99906 * 359.96119 * 25 24 23 27 27 H 1.08998 * 109.47273 * 89.21255 * 1 2 3 28 28 H 1.09002 * 109.46986 * 209.20551 * 1 2 3 29 29 H 1.08996 * 109.47307 * 329.20387 * 1 2 3 30 30 H 0.96705 * 114.00075 * 90.00125 * 5 4 3 31 31 H 1.07995 * 120.51073 * 180.25343 * 7 6 4 32 32 H 0.97002 * 119.99763 * 179.97438 * 15 14 12 33 33 H 1.09008 * 109.46998 * 210.00444 * 20 11 9 34 34 H 1.09002 * 109.46636 * 329.99813 * 20 11 9 35 35 H 1.08005 * 119.99540 * 0.02562 * 22 21 20 36 36 H 1.08002 * 120.00192 * 180.25423 * 23 22 21 37 37 H 1.08004 * 120.00608 * 179.76677 * 24 23 22 38 38 H 1.07996 * 120.00104 * 179.97438 * 25 24 23 39 39 H 1.07996 * 120.00176 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1773 1.1374 0.0000 4 6 3.5018 1.1470 0.0005 5 8 4.1494 2.3349 0.0000 6 7 4.2114 0.0282 -0.0040 7 6 3.6185 -1.1511 0.0011 8 6 2.2182 -1.2070 0.0005 9 6 1.5120 -2.5023 0.0017 10 8 0.6452 -2.7230 -0.8224 11 7 1.8275 -3.4410 0.9158 12 6 2.7269 -3.1556 1.9079 13 1 3.6107 -2.5763 1.6851 14 6 2.5023 -3.6115 3.2018 15 7 3.5038 -3.7107 4.0464 16 14 0.7767 -4.0827 3.7399 17 1 0.5879 -5.5460 3.5715 18 1 0.5868 -3.7202 5.1673 19 1 -0.2167 -3.3566 2.9084 20 6 1.2081 -4.7669 0.8480 21 6 2.0556 -5.6742 -0.0059 22 6 1.8249 -5.7574 -1.3664 23 6 2.6056 -6.5860 -2.1504 24 6 3.6104 -7.3392 -1.5726 25 6 3.8375 -7.2604 -0.2113 26 6 3.0602 -6.4277 0.5721 27 1 -0.3634 0.0141 -1.0275 28 1 -0.3633 -0.8970 0.5015 29 1 -0.3634 0.8827 0.5261 30 1 4.3373 2.6808 0.8832 31 1 4.2035 -2.0589 0.0016 32 1 3.3471 -4.0285 4.9494 33 1 1.1288 -5.1828 1.8525 34 1 0.2133 -4.6812 0.4107 35 1 1.0374 -5.1718 -1.8173 36 1 2.4280 -6.6479 -3.2140 37 1 4.2180 -7.9895 -2.1845 38 1 4.6222 -7.8491 0.2403 39 1 3.2373 -6.3664 1.6356 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194172965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:34 Heat of formation + Delta-G solvation = -0.923124 kcal Electronic energy + Delta-G solvation = -26067.700346 eV Core-core repulsion = 22361.823210 eV Total energy + Delta-G solvation = -3705.877136 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.43863 -40.88409 -39.65291 -38.35270 -36.97429 -35.50769 -34.16751 -33.33279 -32.16069 -31.70727 -29.82331 -27.58993 -27.01444 -25.42122 -24.09981 -23.35811 -22.47471 -21.34964 -20.07621 -19.61931 -19.07266 -18.11127 -17.55493 -17.34823 -17.21491 -16.33455 -16.00308 -15.87712 -15.79123 -15.39205 -15.11189 -14.57604 -14.51118 -14.33981 -14.18452 -13.91326 -13.77606 -13.54939 -13.39008 -13.25717 -13.07688 -12.93184 -12.75602 -12.42023 -12.05103 -11.98639 -11.70025 -11.64855 -11.19634 -10.71265 -10.38256 -10.34237 -9.76300 -9.74341 -9.62554 -8.54558 -6.19331 -0.53376 -0.10650 0.45278 0.57397 1.16081 1.30312 1.39125 1.68686 1.94719 2.13746 2.39358 2.63033 2.86634 3.02081 3.07647 3.34145 3.79468 3.90264 3.92364 3.99998 4.12909 4.22340 4.32524 4.36031 4.44738 4.54309 4.63475 4.73969 4.75065 4.81457 4.92232 5.14646 5.19584 5.23197 5.34228 5.63343 5.65906 5.66234 5.81384 6.00018 6.13973 6.18594 6.47371 6.80540 6.87483 7.26732 7.60914 8.57326 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.011973 B = 0.005709 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.110639 B = 4903.249721 C = 5698.301502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.227 3.773 3 N -0.537 5.537 4 C 0.495 3.505 5 O -0.459 6.459 6 N -0.546 5.546 7 C 0.216 3.784 8 C -0.218 4.218 9 C 0.536 3.464 10 O -0.587 6.587 11 N -0.450 5.450 12 C -0.350 4.350 13 H 0.092 0.908 14 C 0.045 3.955 15 N -0.883 5.883 16 Si 0.907 3.093 17 H -0.257 1.257 18 H -0.285 1.285 19 H -0.261 1.261 20 C 0.136 3.864 21 C -0.106 4.106 22 C -0.114 4.114 23 C -0.128 4.128 24 C -0.118 4.118 25 C -0.128 4.128 26 C -0.108 4.108 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.432 0.568 31 H 0.177 0.823 32 H 0.281 0.719 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.140 0.860 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 -1.311 -5.764 6.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 N -0.263 5.263 4 C 0.191 3.809 5 O -0.266 6.266 6 N -0.272 5.272 7 C 0.050 3.950 8 C -0.226 4.226 9 C 0.324 3.676 10 O -0.472 6.472 11 N -0.169 5.169 12 C -0.478 4.478 13 H 0.109 0.891 14 C -0.161 4.161 15 N -0.518 5.518 16 Si 0.732 3.268 17 H -0.182 1.182 18 H -0.212 1.212 19 H -0.185 1.185 20 C 0.014 3.986 21 C -0.107 4.107 22 C -0.133 4.133 23 C -0.146 4.146 24 C -0.136 4.136 25 C -0.146 4.146 26 C -0.127 4.127 27 H 0.121 0.879 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.295 0.705 31 H 0.194 0.806 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.162 0.838 37 H 0.169 0.831 38 H 0.158 0.842 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.883 -0.528 -6.524 6.811 hybrid contribution -0.616 -0.735 1.451 1.739 sum -2.499 -1.263 -5.074 5.795 Atomic orbital electron populations 1.20825 0.85326 1.04215 1.04946 1.21944 0.98552 0.85273 0.86148 1.67825 1.09184 1.30668 1.18642 1.20530 0.84328 0.85988 0.90024 1.84590 1.75812 1.29953 1.36248 1.67966 1.42135 0.98788 1.18263 1.23290 0.91028 0.95003 0.85648 1.21495 0.96425 0.96399 1.08247 1.17831 0.83073 0.83029 0.83659 1.90644 1.33901 1.80765 1.41937 1.43631 1.39428 1.08168 1.25635 1.19040 1.02985 1.38265 0.87472 0.89093 1.25748 0.99353 0.95366 0.95674 1.69791 1.31970 1.42653 1.07405 0.86423 0.82679 0.79649 0.78010 1.18238 1.21205 1.18524 1.20659 0.96166 0.82877 0.98861 1.20118 0.98260 0.97481 0.94883 1.21217 1.00325 0.98790 0.92930 1.21401 0.95911 0.96650 1.00607 1.21470 0.97853 0.99446 0.94784 1.21383 0.99627 0.99001 0.94580 1.21138 0.95224 0.96303 1.00045 0.87885 0.90921 0.88010 0.70475 0.80642 0.90933 0.91299 0.89827 0.86452 0.83802 0.83073 0.84221 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.94 9.38 71.24 0.67 -2.27 16 2 C 0.23 8.36 6.86 42.98 0.30 8.66 16 3 N -0.54 -19.18 10.38 -300.44 -3.12 -22.30 16 4 C 0.50 17.44 8.70 180.48 1.57 19.01 16 5 O -0.46 -12.88 13.63 -85.82 -1.17 -14.05 16 6 N -0.55 -20.79 10.45 -312.35 -3.26 -24.06 16 7 C 0.22 8.55 9.09 85.13 0.77 9.32 16 8 C -0.22 -8.83 5.07 -19.91 -0.10 -8.93 16 9 C 0.54 23.04 6.24 86.69 0.54 23.58 16 10 O -0.59 -25.89 15.33 -4.09 -0.06 -25.96 16 11 N -0.45 -19.84 2.10 -643.22 -1.35 -21.19 16 12 C -0.35 -16.84 8.87 84.09 0.75 -16.10 16 13 H 0.09 4.64 5.11 -2.91 -0.01 4.62 16 14 C 0.04 2.20 5.31 84.95 0.45 2.65 16 15 N -0.88 -45.73 13.96 21.68 0.30 -45.42 16 16 Si 0.91 38.74 25.09 68.60 1.72 40.46 16 17 H -0.26 -10.32 6.69 99.48 0.67 -9.66 16 18 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 C 0.14 5.57 4.37 85.63 0.37 5.94 16 21 C -0.11 -3.99 5.46 -19.87 -0.11 -4.10 16 22 C -0.11 -3.85 9.70 22.27 0.22 -3.63 16 23 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16 24 C -0.12 -2.97 10.05 22.27 0.22 -2.75 16 25 C -0.13 -3.71 10.05 22.27 0.22 -3.48 16 26 C -0.11 -3.89 9.70 22.27 0.22 -3.67 16 27 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.07 2.43 6.87 -2.39 -0.02 2.41 16 29 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.43 7.35 9.06 -74.05 -0.67 6.68 16 31 H 0.18 6.90 7.08 -2.91 -0.02 6.88 16 32 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 33 H 0.07 2.87 3.46 -2.38 -0.01 2.87 16 34 H 0.08 3.32 7.30 -2.39 -0.02 3.31 16 35 H 0.12 4.07 7.86 -2.91 -0.02 4.05 16 36 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 38 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 39 H 0.11 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -60.63 334.27 -0.23 -60.86 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.40 Total: 30.70 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 6.31 Total: 20.96 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -7.43 Total: -112.97 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -1.23 Total: -40.01 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 1.72 Total: 40.46 kcal Total: -60.63 -0.23 -60.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194172965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.934 kcal (2) G-P(sol) polarization free energy of solvation -60.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds