Wall clock time and date at job start Tue Mar 31 2020 10:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30611 * 119.97820 * 2 1 4 4 C 1.34181 * 120.62207 * 180.02562 * 3 2 1 5 5 C 1.47459 * 119.73653 * 180.02562 * 4 3 2 6 6 O 1.21638 * 119.99909 * 174.18277 * 5 4 3 7 7 N 1.34777 * 120.00084 * 354.18578 * 5 4 3 8 8 C 1.36879 * 119.99802 * 4.30009 * 7 5 4 9 9 H 1.08001 * 120.00952 * 310.66937 * 8 7 5 10 10 C 1.39026 * 119.99802 * 130.66882 * 8 7 5 11 11 N 1.31383 * 119.99860 * 3.94196 * 10 8 7 12 12 Si 1.86803 * 120.00204 * 183.93816 * 10 8 7 13 13 H 1.48502 * 109.47009 * 90.00244 * 12 10 8 14 14 H 1.48503 * 109.46887 * 210.00127 * 12 10 8 15 15 H 1.48498 * 109.46962 * 329.99669 * 12 10 8 16 16 C 1.46503 * 119.99793 * 184.30743 * 7 5 4 17 17 C 1.50696 * 109.47310 * 94.84320 * 16 7 5 18 18 C 1.38234 * 120.00230 * 274.56311 * 17 16 7 19 19 C 1.38237 * 119.99909 * 179.76507 * 18 17 16 20 20 C 1.38230 * 120.00199 * 0.48700 * 19 18 17 21 21 C 1.38237 * 119.99924 * 359.78173 * 20 19 18 22 22 C 1.38229 * 119.99844 * 359.96672 * 21 20 19 23 23 C 1.38153 * 120.52659 * 359.97438 * 4 3 2 24 24 N 1.34858 * 119.94059 * 0.02562 * 23 4 3 25 25 H 0.97000 * 120.30676 * 179.97438 * 24 23 4 26 26 C 1.34958 * 119.38663 * 0.02562 * 24 23 4 27 27 O 1.21871 * 120.25771 * 180.02562 * 26 24 23 28 28 H 1.09000 * 109.46934 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46613 * 120.00094 * 1 2 3 30 30 H 1.08997 * 109.47148 * 240.00065 * 1 2 3 31 31 H 0.96996 * 119.99954 * 180.02562 * 11 10 8 32 32 H 1.09002 * 109.46786 * 214.84346 * 16 7 5 33 33 H 1.08995 * 109.47104 * 334.84452 * 16 7 5 34 34 H 1.08003 * 119.99644 * 359.97438 * 18 17 16 35 35 H 1.08003 * 119.99908 * 180.24977 * 19 18 17 36 36 H 1.08004 * 119.99954 * 179.77113 * 20 19 18 37 37 H 1.07995 * 119.99810 * 179.97438 * 21 20 19 38 38 H 1.08004 * 120.00103 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.03390 * 179.72254 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1597 1.1314 0.0000 4 6 3.5014 1.1464 -0.0005 5 6 4.2184 2.4350 0.0001 6 8 5.4299 2.4568 0.1064 7 7 3.5313 3.5886 -0.1171 8 6 2.1630 3.5700 -0.1481 9 1 1.6469 2.8938 -0.8135 10 6 1.4375 4.4217 0.6772 11 7 2.0634 5.2980 1.4298 12 14 -0.4274 4.3202 0.7159 13 1 -0.8489 3.3528 1.7607 14 1 -0.9896 5.6594 1.0254 15 1 -0.9261 3.8680 -0.6077 16 6 4.2490 4.8622 -0.2115 17 6 4.4240 5.2340 -1.6614 18 6 5.4973 4.7379 -2.3775 19 6 5.6551 5.0750 -3.7088 20 6 4.7453 5.9163 -4.3213 21 6 3.6750 6.4169 -3.6037 22 6 3.5144 6.0756 -2.2739 23 6 4.2165 -0.0356 -0.0005 24 7 3.5649 -1.2164 -0.0005 25 1 4.0617 -2.0495 -0.0009 26 6 2.2154 -1.2281 -0.0011 27 8 1.6105 -2.2861 -0.0006 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3632 -0.5139 -0.8900 30 1 -0.3633 -0.5138 0.8900 31 1 1.5572 5.8919 2.0058 32 1 3.6781 5.6395 0.2965 33 1 5.2273 4.7637 0.2589 34 1 6.2107 4.0841 -1.8977 35 1 6.4914 4.6842 -4.2694 36 1 4.8706 6.1827 -5.3604 37 1 2.9644 7.0746 -4.0821 38 1 2.6784 6.4670 -1.7131 39 1 5.2962 -0.0142 -0.0055 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196515429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:30 Heat of formation + Delta-G solvation = 16.808715 kcal Electronic energy + Delta-G solvation = -26046.778445 eV Core-core repulsion = 22341.670220 eV Total energy + Delta-G solvation = -3705.108226 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38116 -39.09524 -38.12564 -36.87246 -35.38237 -34.77128 -31.85270 -31.34566 -30.35262 -30.26615 -27.78588 -25.99332 -24.89625 -24.22263 -22.96139 -21.90714 -20.77320 -19.68438 -18.53313 -18.11496 -17.11774 -16.40550 -15.96274 -15.80083 -15.12259 -14.69382 -14.57696 -14.35556 -14.17557 -13.97172 -13.78455 -13.27022 -12.93876 -12.80728 -12.58738 -12.46026 -12.04258 -11.91098 -11.81693 -11.42665 -11.29341 -11.13696 -10.86630 -10.85137 -10.71337 -10.34976 -10.29695 -10.12775 -9.21727 -9.11270 -8.47448 -8.32632 -8.07339 -7.82927 -7.36220 -6.26824 -4.06819 0.85936 1.74993 1.94719 2.00473 2.81184 3.17955 3.25970 3.27972 3.54443 4.08730 4.28794 4.40899 4.48887 4.55149 4.77326 5.09434 5.26646 5.42623 5.43780 5.48489 5.58661 5.73154 5.88387 5.95001 6.01990 6.12187 6.18727 6.31428 6.44726 6.45480 6.57143 6.62049 6.66529 6.78955 7.03636 7.07633 7.22524 7.47841 7.61377 7.70779 7.88350 7.94245 8.21926 8.51883 9.10270 9.35976 9.81743 10.71915 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.011754 B = 0.005910 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.577499 B = 4736.731483 C = 6044.215195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.032 3.968 3 N -0.317 5.317 4 C -0.018 4.018 5 C 0.533 3.467 6 O -0.606 6.606 7 N -0.406 5.406 8 C -0.295 4.295 9 H 0.108 0.892 10 C 0.044 3.956 11 N -0.878 5.878 12 Si 0.915 3.085 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.267 1.267 16 C 0.131 3.869 17 C -0.074 4.074 18 C -0.110 4.110 19 C -0.133 4.133 20 C -0.135 4.135 21 C -0.132 4.132 22 C -0.092 4.092 23 C 0.122 3.878 24 N -0.587 5.587 25 H 0.417 0.583 26 C 0.478 3.522 27 O -0.545 6.545 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.269 0.731 32 H 0.131 0.869 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.997 -3.471 -5.237 6.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.136 4.136 3 N -0.033 5.033 4 C -0.142 4.142 5 C 0.321 3.679 6 O -0.494 6.494 7 N -0.121 5.121 8 C -0.424 4.424 9 H 0.126 0.874 10 C -0.160 4.160 11 N -0.517 5.517 12 Si 0.742 3.258 13 H -0.200 1.200 14 H -0.213 1.213 15 H -0.191 1.191 16 C 0.008 3.992 17 C -0.075 4.075 18 C -0.128 4.128 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.150 4.150 22 C -0.111 4.111 23 C -0.012 4.012 24 N -0.219 5.219 25 H 0.255 0.745 26 C 0.274 3.726 27 O -0.424 6.424 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.085 0.915 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.142 0.858 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.792 -2.967 -5.031 6.109 hybrid contribution -0.184 -1.153 0.061 1.169 sum 1.608 -4.120 -4.970 6.653 Atomic orbital electron populations 1.20409 0.86842 1.03737 1.02638 1.23402 0.98768 0.86623 1.04854 1.68963 1.07578 1.26340 1.00468 1.20811 0.89118 0.93776 1.10522 1.17513 0.85898 0.83253 0.81273 1.90633 1.13635 1.87135 1.57952 1.43200 1.06508 1.02822 1.59537 1.19821 0.79427 1.21800 1.21349 0.87442 1.25501 1.00015 0.95765 0.94685 1.69584 1.36061 1.20343 1.25698 0.86114 0.83139 0.77450 0.79130 1.20031 1.21316 1.19133 1.20828 0.98048 0.90074 0.90225 1.20589 0.93631 0.95274 0.98001 1.21253 0.98309 0.99242 0.94023 1.21022 0.99435 0.99426 0.95237 1.20962 0.95946 0.99297 0.99149 1.21067 0.98107 1.00943 0.94864 1.21160 0.98426 0.97201 0.94324 1.23130 1.00383 0.84363 0.93319 1.43498 1.09234 1.09649 1.59563 0.74456 1.18642 0.81360 0.92704 0.79870 1.90903 1.66305 1.32866 1.52279 0.89890 0.90715 0.90677 0.92080 0.85198 0.91549 0.86054 0.87117 0.87208 0.86939 0.85842 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 9.76 36.01 0.35 -0.87 16 2 C 0.03 0.58 6.86 -81.76 -0.56 0.02 16 3 N -0.32 -6.40 6.37 -5.63 -0.04 -6.44 16 4 C -0.02 -0.36 6.62 -83.12 -0.55 -0.91 16 5 C 0.53 12.17 7.59 -12.50 -0.09 12.08 16 6 O -0.61 -14.22 15.69 5.24 0.08 -14.14 16 7 N -0.41 -9.65 2.48 -117.31 -0.29 -9.94 16 8 C -0.29 -7.10 7.33 -15.01 -0.11 -7.21 16 9 H 0.11 2.61 6.07 -52.49 -0.32 2.29 16 10 C 0.04 1.07 5.40 -17.45 -0.09 0.97 16 11 N -0.88 -22.04 10.95 55.50 0.61 -21.43 16 12 Si 0.91 19.27 29.56 -169.99 -5.02 14.24 16 13 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 14 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 16 C 0.13 2.96 5.28 -5.19 -0.03 2.93 16 17 C -0.07 -1.50 5.43 -104.62 -0.57 -2.07 16 18 C -0.11 -2.06 9.72 -39.58 -0.38 -2.45 16 19 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 20 C -0.14 -2.08 10.05 -39.58 -0.40 -2.48 16 21 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 22 C -0.09 -1.75 9.68 -39.58 -0.38 -2.14 16 23 C 0.12 1.85 10.78 -16.25 -0.18 1.68 16 24 N -0.59 -7.95 5.28 -14.17 -0.07 -8.03 16 25 H 0.42 4.10 8.92 -40.82 -0.36 3.73 16 26 C 0.48 8.01 7.72 -14.83 -0.11 7.90 16 27 O -0.55 -10.07 17.41 5.04 0.09 -9.98 16 28 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.13 3.14 5.32 -51.93 -0.28 2.86 16 33 H 0.07 1.54 7.20 -51.93 -0.37 1.16 16 34 H 0.12 2.33 7.96 -52.48 -0.42 1.91 16 35 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 36 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 39 H 0.18 2.30 7.59 -52.49 -0.40 1.90 16 LS Contribution 339.37 15.07 5.11 5.11 Total: -1.00 -29.42 339.37 -7.68 -37.10 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -4.24 Total: 11.16 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -3.91 Total: 2.35 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.21 Total: -45.84 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: 0.17 Total: -24.13 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.42 -7.68 -37.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196515429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.907 kcal (2) G-P(sol) polarization free energy of solvation -29.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds