Wall clock time and date at job start Tue Mar 31 2020 10:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30611 * 119.97820 * 2 1 4 4 C 1.34181 * 120.62207 * 180.02562 * 3 2 1 5 5 C 1.47459 * 119.73653 * 180.02562 * 4 3 2 6 6 O 1.21638 * 119.99909 * 174.18277 * 5 4 3 7 7 N 1.34777 * 120.00084 * 354.18578 * 5 4 3 8 8 C 1.36879 * 119.99802 * 4.30009 * 7 5 4 9 9 H 1.08001 * 120.00952 * 310.66937 * 8 7 5 10 10 C 1.39026 * 119.99802 * 130.66882 * 8 7 5 11 11 N 1.31383 * 119.99860 * 3.94196 * 10 8 7 12 12 Si 1.86803 * 120.00204 * 183.93816 * 10 8 7 13 13 H 1.48502 * 109.47009 * 90.00244 * 12 10 8 14 14 H 1.48503 * 109.46887 * 210.00127 * 12 10 8 15 15 H 1.48498 * 109.46962 * 329.99669 * 12 10 8 16 16 C 1.46503 * 119.99793 * 184.30743 * 7 5 4 17 17 C 1.50696 * 109.47310 * 94.84320 * 16 7 5 18 18 C 1.38234 * 120.00230 * 274.56311 * 17 16 7 19 19 C 1.38237 * 119.99909 * 179.76507 * 18 17 16 20 20 C 1.38230 * 120.00199 * 0.48700 * 19 18 17 21 21 C 1.38237 * 119.99924 * 359.78173 * 20 19 18 22 22 C 1.38229 * 119.99844 * 359.96672 * 21 20 19 23 23 C 1.38153 * 120.52659 * 359.97438 * 4 3 2 24 24 N 1.34858 * 119.94059 * 0.02562 * 23 4 3 25 25 H 0.97000 * 120.30676 * 179.97438 * 24 23 4 26 26 C 1.34958 * 119.38663 * 0.02562 * 24 23 4 27 27 O 1.21871 * 120.25771 * 180.02562 * 26 24 23 28 28 H 1.09000 * 109.46934 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46613 * 120.00094 * 1 2 3 30 30 H 1.08997 * 109.47148 * 240.00065 * 1 2 3 31 31 H 0.96996 * 119.99954 * 180.02562 * 11 10 8 32 32 H 1.09002 * 109.46786 * 214.84346 * 16 7 5 33 33 H 1.08995 * 109.47104 * 334.84452 * 16 7 5 34 34 H 1.08003 * 119.99644 * 359.97438 * 18 17 16 35 35 H 1.08003 * 119.99908 * 180.24977 * 19 18 17 36 36 H 1.08004 * 119.99954 * 179.77113 * 20 19 18 37 37 H 1.07995 * 119.99810 * 179.97438 * 21 20 19 38 38 H 1.08004 * 120.00103 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.03390 * 179.72254 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1597 1.1314 0.0000 4 6 3.5014 1.1464 -0.0005 5 6 4.2184 2.4350 0.0001 6 8 5.4299 2.4568 0.1064 7 7 3.5313 3.5886 -0.1171 8 6 2.1630 3.5700 -0.1481 9 1 1.6469 2.8938 -0.8135 10 6 1.4375 4.4217 0.6772 11 7 2.0634 5.2980 1.4298 12 14 -0.4274 4.3202 0.7159 13 1 -0.8489 3.3528 1.7607 14 1 -0.9896 5.6594 1.0254 15 1 -0.9261 3.8680 -0.6077 16 6 4.2490 4.8622 -0.2115 17 6 4.4240 5.2340 -1.6614 18 6 5.4973 4.7379 -2.3775 19 6 5.6551 5.0750 -3.7088 20 6 4.7453 5.9163 -4.3213 21 6 3.6750 6.4169 -3.6037 22 6 3.5144 6.0756 -2.2739 23 6 4.2165 -0.0356 -0.0005 24 7 3.5649 -1.2164 -0.0005 25 1 4.0617 -2.0495 -0.0009 26 6 2.2154 -1.2281 -0.0011 27 8 1.6105 -2.2861 -0.0006 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3632 -0.5139 -0.8900 30 1 -0.3633 -0.5138 0.8900 31 1 1.5572 5.8919 2.0058 32 1 3.6781 5.6395 0.2965 33 1 5.2273 4.7637 0.2589 34 1 6.2107 4.0841 -1.8977 35 1 6.4914 4.6842 -4.2694 36 1 4.8706 6.1827 -5.3604 37 1 2.9644 7.0746 -4.0821 38 1 2.6784 6.4670 -1.7131 39 1 5.2962 -0.0142 -0.0055 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196515429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:30 Heat of formation + Delta-G solvation = -0.527902 kcal Electronic energy + Delta-G solvation = -26047.530218 eV Core-core repulsion = 22341.670220 eV Total energy + Delta-G solvation = -3705.859998 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.75018 -40.69018 -39.58685 -38.33980 -36.90783 -36.34286 -33.57214 -32.82875 -31.81318 -31.63652 -29.11758 -27.62994 -26.58990 -25.61631 -24.40343 -23.28009 -22.20235 -21.31454 -20.07644 -19.49461 -18.63941 -17.88626 -17.38600 -17.16084 -16.73688 -16.40639 -16.15123 -15.89559 -15.63335 -15.39133 -15.26153 -14.82789 -14.18711 -14.14896 -14.07928 -13.92111 -13.50860 -13.30234 -13.20099 -13.09253 -12.91029 -12.80767 -12.43330 -12.27452 -12.19224 -11.99364 -11.78171 -11.67177 -10.97910 -10.77697 -10.03754 -9.69272 -9.50805 -9.34439 -9.01957 -8.08342 -5.93486 -0.44508 0.30319 0.56767 0.63181 1.49233 1.51770 1.56162 1.61297 2.01298 2.40446 2.77318 2.83502 3.05604 3.15529 3.36875 3.38936 3.93840 4.05939 4.14720 4.20354 4.28900 4.32763 4.42687 4.60269 4.73471 4.78399 4.80066 4.91839 5.01495 5.22989 5.23510 5.28294 5.29973 5.37607 5.44677 5.69604 5.71392 5.79808 5.99967 6.17170 6.27250 6.56658 6.64710 6.85831 7.28222 7.59255 8.02961 8.89795 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.011754 B = 0.005910 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.577499 B = 4736.731483 C = 6044.215195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.020 3.980 3 N -0.345 5.345 4 C -0.064 4.064 5 C 0.526 3.474 6 O -0.623 6.623 7 N -0.423 5.423 8 C -0.291 4.291 9 H 0.105 0.895 10 C 0.004 3.996 11 N -0.909 5.909 12 Si 0.964 3.036 13 H -0.275 1.275 14 H -0.289 1.289 15 H -0.256 1.256 16 C 0.137 3.863 17 C -0.096 4.096 18 C -0.125 4.125 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.127 4.127 22 C -0.111 4.111 23 C 0.172 3.828 24 N -0.564 5.564 25 H 0.440 0.560 26 C 0.482 3.518 27 O -0.558 6.558 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.266 0.734 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.108 0.892 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.107 0.893 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.162 -4.883 -7.423 9.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.149 4.149 3 N -0.061 5.061 4 C -0.188 4.188 5 C 0.315 3.685 6 O -0.511 6.511 7 N -0.137 5.137 8 C -0.420 4.420 9 H 0.122 0.878 10 C -0.196 4.196 11 N -0.549 5.549 12 Si 0.790 3.210 13 H -0.201 1.201 14 H -0.215 1.215 15 H -0.180 1.180 16 C 0.015 3.985 17 C -0.097 4.097 18 C -0.143 4.143 19 C -0.146 4.146 20 C -0.143 4.143 21 C -0.145 4.145 22 C -0.130 4.130 23 C 0.036 3.964 24 N -0.198 5.198 25 H 0.283 0.717 26 C 0.279 3.721 27 O -0.437 6.437 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.126 0.874 35 H 0.160 0.840 36 H 0.169 0.831 37 H 0.160 0.840 38 H 0.125 0.875 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 1.966 -4.418 -7.228 8.696 hybrid contribution -0.111 -0.813 0.690 1.072 sum 1.855 -5.230 -6.538 8.575 Atomic orbital electron populations 1.20481 0.85669 1.03541 1.03945 1.23677 0.99737 0.86507 1.04977 1.68746 1.08072 1.27847 1.01461 1.20483 0.89544 0.93825 1.14940 1.17960 0.85994 0.84204 0.80334 1.90594 1.14204 1.87721 1.58607 1.43379 1.06633 1.03392 1.60342 1.19844 0.79713 1.21352 1.21056 0.87781 1.26117 1.03272 0.95596 0.94588 1.69724 1.37083 1.21272 1.26787 0.85347 0.79206 0.77073 0.79418 1.20064 1.21528 1.18004 1.20590 0.96315 0.89557 0.92066 1.20418 0.95318 0.97080 0.96878 1.21212 0.97839 0.99832 0.95463 1.21373 1.00378 0.98790 0.94012 1.21424 0.94467 0.97581 1.00842 1.21398 0.98939 1.00651 0.93533 1.21125 0.98099 0.97903 0.95843 1.23304 1.01198 0.83336 0.88597 1.43337 1.08515 1.10223 1.57706 0.71673 1.18475 0.82200 0.91986 0.79489 1.90905 1.66878 1.33145 1.52766 0.90826 0.89086 0.89587 0.92426 0.87308 0.93534 0.87367 0.83979 0.83078 0.84007 0.87483 0.77023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.36 9.76 71.24 0.69 -1.66 16 2 C 0.02 0.69 6.86 43.62 0.30 0.99 16 3 N -0.34 -13.91 6.37 -171.73 -1.09 -15.00 16 4 C -0.06 -2.52 6.62 41.20 0.27 -2.25 16 5 C 0.53 24.64 7.59 86.67 0.66 25.30 16 6 O -0.62 -29.86 15.69 -4.15 -0.07 -29.92 16 7 N -0.42 -20.96 2.48 -643.29 -1.60 -22.56 16 8 C -0.29 -14.48 7.33 84.09 0.62 -13.87 16 9 H 0.10 5.19 6.07 -2.91 -0.02 5.17 16 10 C 0.00 0.22 5.40 84.95 0.46 0.68 16 11 N -0.91 -47.93 10.95 21.68 0.24 -47.69 16 12 Si 0.96 40.34 29.56 68.60 2.03 42.37 16 13 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 14 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 16 C 0.14 6.63 5.28 85.63 0.45 7.09 16 17 C -0.10 -4.04 5.43 -19.87 -0.11 -4.15 16 18 C -0.12 -4.73 9.72 22.27 0.22 -4.51 16 19 C -0.13 -3.85 10.05 22.27 0.22 -3.62 16 20 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 21 C -0.13 -3.90 10.05 22.27 0.22 -3.68 16 22 C -0.11 -4.29 9.68 22.27 0.22 -4.07 16 23 C 0.17 4.81 10.78 84.21 0.91 5.72 16 24 N -0.56 -13.58 5.28 -316.80 -1.67 -15.25 16 25 H 0.44 6.91 8.92 -92.71 -0.83 6.09 16 26 C 0.48 15.09 7.72 85.09 0.66 15.75 16 27 O -0.56 -19.21 17.41 -4.90 -0.09 -19.30 16 28 H 0.07 2.32 8.11 -2.39 -0.02 2.30 16 29 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 32 H 0.11 5.69 5.32 -2.39 -0.01 5.67 16 33 H 0.05 2.33 7.20 -2.39 -0.02 2.31 16 34 H 0.11 4.29 7.96 -2.91 -0.02 4.27 16 35 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 37 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 38 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 39 H 0.21 4.68 7.59 -2.91 -0.02 4.66 16 Total: -1.00 -66.47 339.37 4.04 -62.42 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.28 Total: 30.41 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 6.01 Total: 14.52 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -4.13 Total: -100.50 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -0.15 Total: -49.22 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -66.47 4.04 -62.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196515429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.896 kcal (2) G-P(sol) polarization free energy of solvation -66.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds