Wall clock time and date at job start Tue Mar 31 2020 10:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46961 * 111.00225 * 293.79408 * 10 9 7 12 12 C 1.53043 * 109.36613 * 176.81617 * 11 10 9 13 13 N 1.46957 * 109.36458 * 58.40176 * 12 11 10 14 14 C 1.46902 * 110.99807 * 176.80904 * 13 12 11 15 15 C 1.50700 * 109.47526 * 293.80311 * 14 13 12 16 16 C 1.38505 * 120.44327 * 89.99909 * 15 14 13 17 17 F 1.35099 * 119.63845 * 359.97438 * 16 15 14 18 18 N 1.32049 * 120.71455 * 180.02562 * 16 15 14 19 19 C 1.31957 * 121.72302 * 0.02562 * 18 16 15 20 20 C 1.38047 * 120.81190 * 0.02562 * 19 18 16 21 21 C 1.38656 * 120.43862 * 269.72378 * 15 14 13 22 22 Cl 1.73601 * 120.78723 * 359.97438 * 21 15 14 23 23 C 1.46947 * 110.88220 * 300.67806 * 13 12 11 24 24 C 1.46964 * 110.99832 * 170.00196 * 10 9 7 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09000 * 109.48905 * 296.78868 * 11 10 9 29 29 H 1.09006 * 109.48522 * 56.84713 * 11 10 9 30 30 H 1.09006 * 109.48883 * 298.43392 * 12 11 10 31 31 H 1.09004 * 109.48849 * 178.36912 * 12 11 10 32 32 H 1.09002 * 109.47270 * 53.80234 * 14 13 12 33 33 H 1.09002 * 109.47092 * 173.80239 * 14 13 12 34 34 H 1.07997 * 119.59229 * 180.02562 * 19 18 16 35 35 H 1.08000 * 120.39261 * 179.97438 * 20 19 18 36 36 H 1.08995 * 109.49351 * 299.35633 * 23 13 12 37 37 H 1.08997 * 109.49010 * 179.28744 * 23 13 12 38 38 H 1.09004 * 109.48449 * 303.15139 * 24 10 9 39 39 H 1.09004 * 109.48782 * 63.21327 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 2.9686 -3.6508 -1.2657 12 6 4.0040 -4.7758 -1.1990 13 7 3.3192 -6.0551 -0.9665 14 6 4.2738 -7.1717 -0.9714 15 6 4.8579 -7.3272 -2.3519 16 6 6.0113 -6.6473 -2.7065 17 9 6.6142 -5.8397 -1.8068 18 7 6.5275 -6.7792 -3.9148 19 6 5.9718 -7.5556 -4.8257 20 6 4.8204 -8.2632 -4.5445 21 6 4.2509 -8.1572 -3.2821 22 17 2.8082 -9.0357 -2.8814 23 6 2.5562 -6.0202 0.2889 24 6 1.5207 -4.8951 0.2222 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.2895 -3.8304 -2.0992 29 1 3.4766 -2.6970 -1.4092 30 1 4.6996 -4.5820 -0.3824 31 1 4.5516 -4.8223 -2.1403 32 1 5.0736 -6.9691 -0.2592 33 1 3.7597 -8.0904 -0.6889 34 1 6.4235 -7.6384 -5.8032 35 1 4.3711 -8.8963 -5.2953 36 1 3.2352 -5.8404 1.1223 37 1 2.0482 -6.9738 0.4324 38 1 0.9731 -4.8486 1.1635 39 1 0.8251 -5.0889 -0.5944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232615077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:24 Heat of formation + Delta-G solvation = 6.743772 kcal Electronic energy + Delta-G solvation = -23982.467911 eV Core-core repulsion = 20286.863176 eV Total energy + Delta-G solvation = -3695.604735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.32002 -40.58367 -38.71170 -37.07878 -35.48747 -33.08299 -32.30356 -31.56710 -30.42098 -28.40504 -26.27589 -24.35088 -24.02617 -23.11965 -22.12936 -21.28130 -19.21031 -18.48346 -17.89455 -16.76198 -16.34340 -16.18238 -15.55708 -15.22214 -14.80653 -14.52605 -14.42491 -14.18808 -13.95686 -13.85034 -13.72227 -13.24370 -13.22025 -12.69388 -12.38151 -12.13355 -11.94090 -11.67191 -11.33101 -11.17322 -10.87512 -10.75463 -10.65585 -10.42311 -10.31052 -10.10316 -9.84319 -9.70061 -9.36112 -9.17132 -8.41974 -8.22120 -7.22118 -6.00923 -4.02292 0.43568 0.51858 1.54890 3.04985 3.20954 3.35236 3.38906 3.42230 4.00750 4.09752 4.23799 4.35826 4.44095 4.79553 4.91725 4.95832 5.13458 5.23279 5.32220 5.34806 5.41435 5.53482 5.56788 5.74245 5.80820 5.90900 6.02881 6.08195 6.18061 6.42554 6.58456 6.69186 7.09658 7.12249 7.19910 7.34409 7.38071 7.81449 8.10213 8.21679 8.56724 9.04958 9.61889 11.09936 Molecular weight = 313.11amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.003556 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.847908 B = 7873.117378 C = 8636.054318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.070 3.930 12 C 0.057 3.943 13 N -0.529 5.529 14 C 0.092 3.908 15 C -0.140 4.140 16 C 0.329 3.671 17 F -0.100 7.100 18 N -0.510 5.510 19 C 0.146 3.854 20 C -0.178 4.178 21 C 0.048 3.952 22 Cl -0.028 7.028 23 C 0.063 3.937 24 C 0.057 3.943 25 H 0.262 0.738 26 H 0.030 0.970 27 H -0.009 1.009 28 H 0.028 0.972 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.177 0.823 35 H 0.154 0.846 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.305 -21.114 -7.767 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.059 4.059 12 C -0.071 4.071 13 N -0.254 5.254 14 C -0.036 4.036 15 C -0.145 4.145 16 C 0.175 3.825 17 F -0.079 7.079 18 N -0.224 5.224 19 C -0.011 4.011 20 C -0.199 4.199 21 C 0.012 3.988 22 Cl 0.001 6.999 23 C -0.064 4.064 24 C -0.072 4.072 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.009 0.991 28 H 0.046 0.954 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.194 0.806 35 H 0.172 0.828 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.771 -20.558 -7.857 24.080 hybrid contribution -0.358 0.623 0.295 0.777 sum 9.413 -19.935 -7.562 23.306 Atomic orbital electron populations 1.69952 1.06062 1.26856 1.50983 1.24981 0.94849 0.99272 0.95432 0.86570 0.79450 0.82780 0.78671 1.20272 1.21357 1.20160 1.21122 0.93422 0.89977 1.50137 0.91985 1.19692 0.90016 0.87263 0.96106 1.62291 1.28127 1.02722 1.33151 1.21959 0.95314 0.97301 0.91302 1.22330 0.96273 0.88536 0.99968 1.62234 1.24828 1.02700 1.35674 1.20939 0.95459 0.97009 0.90190 1.20425 0.95735 0.99044 0.99304 1.17819 0.89095 0.89806 0.85792 1.91677 1.82710 1.69748 1.63760 1.67080 1.34276 1.19998 1.01037 1.22532 0.91339 0.89636 0.97573 1.22151 0.98214 1.03381 0.96156 1.20953 0.89664 0.94378 0.93757 1.98417 1.34578 1.73114 1.93756 1.22167 0.96045 0.98842 0.89394 1.22059 0.94658 0.89889 1.00583 0.92888 0.95194 0.99079 0.95412 0.89518 0.93725 0.92051 0.92834 0.88785 0.80614 0.82808 0.93976 0.90976 0.90850 0.95076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.42 8.47 -34.44 -0.29 -14.71 16 8 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 9 C 0.19 5.14 4.72 -4.98 -0.02 5.11 16 10 N -0.54 -11.82 4.70 -235.90 -1.11 -12.93 16 11 C 0.07 1.42 5.43 -3.77 -0.02 1.40 16 12 C 0.06 0.95 4.59 -3.77 -0.02 0.93 16 13 N -0.53 -7.81 4.70 -235.92 -1.11 -8.92 16 14 C 0.09 1.11 4.62 -4.97 -0.02 1.09 16 15 C -0.14 -1.64 4.91 -104.37 -0.51 -2.16 16 16 C 0.33 4.19 7.05 -17.36 -0.12 4.07 16 17 F -0.10 -1.39 15.11 2.25 0.03 -1.36 16 18 N -0.51 -6.06 10.37 -13.61 -0.14 -6.20 16 19 C 0.15 1.21 11.18 -17.57 -0.20 1.01 16 20 C -0.18 -1.39 9.93 -39.41 -0.39 -1.79 16 21 C 0.05 0.48 6.36 -39.18 -0.25 0.23 16 22 Cl -0.03 -0.27 27.49 -51.86 -1.43 -1.69 16 23 C 0.06 0.93 5.61 -3.77 -0.02 0.91 16 24 C 0.06 1.04 5.61 -3.76 -0.02 1.02 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 27 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.90 6.79 -51.93 -0.35 1.55 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.00 5.64 -51.93 -0.29 0.70 16 32 H 0.05 0.64 7.64 -51.93 -0.40 0.25 16 33 H 0.09 0.99 6.89 -51.93 -0.36 0.63 16 34 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 38 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -31.41 333.82 -10.11 -41.52 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -5.12 Total: -4.73 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.99 Total: -1.37 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -1.62 Total: -54.27 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.03 Total: -1.36 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.43 Total: -1.69 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.41 -10.11 -41.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232615077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.267 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds